data_4N4D
#
_model_server_result.job_id            WnW1qyUShoUP2jeiTQS-Jg 
_model_server_result.datetime_utc      '2024-11-23 06:01:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4n4d 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":204}' 
#
_entry.id    4N4D 
#
_exptl.entry_id    4N4D 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              306.395 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            'nonyl beta-D-glucopyranoside' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          94.17 
_cell.angle_gamma         90 
_cell.entry_id            4N4D 
_cell.length_a            63.16 
_cell.length_b            84.26 
_cell.length_c            127.25 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4N4D 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,GA 1 1 
B,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,HA 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
? 3 F N N 
? 3 V N N 
? 3 W N N 
#
_chem_comp.formula           'C15 H30 O6' 
_chem_comp.formula_weight    306.395 
_chem_comp.id                BNG 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              'nonyl beta-D-glucopyranoside' 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     'Beta-NONYLGLUCOSIDE;nonyl beta-D-glucoside;nonyl D-glucoside;nonyl glucoside' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 BNG sing 92 n n 
C1 O1 BNG sing 93 n n 
C1 O5 BNG sing 94 n n 
C1 H1 BNG sing 95 n n 
C2 C3 BNG sing 96 n n 
C2 O2 BNG sing 97 n n 
C2 H2 BNG sing 98 n n 
C3 C4 BNG sing 99 n n 
C3 O3 BNG sing 100 n n 
C3 H3 BNG sing 101 n n 
C4 C5 BNG sing 102 n n 
C4 O4 BNG sing 103 n n 
C4 H4 BNG sing 104 n n 
C5 C6 BNG sing 105 n n 
C5 O5 BNG sing 106 n n 
C5 H5 BNG sing 107 n n 
C6 O6 BNG sing 108 n n 
C6 H61 BNG sing 109 n n 
C6 H62 BNG sing 110 n n 
C1' C2' BNG sing 111 n n 
C1' O1 BNG sing 112 n n 
C1' "H1'1" BNG sing 113 n n 
C1' "H1'2" BNG sing 114 n n 
C2' C3' BNG sing 115 n n 
C2' "H2'1" BNG sing 116 n n 
C2' "H2'2" BNG sing 117 n n 
C3' C4' BNG sing 118 n n 
C3' "H3'1" BNG sing 119 n n 
C3' "H3'2" BNG sing 120 n n 
C4' C5' BNG sing 121 n n 
C4' "H4'1" BNG sing 122 n n 
C4' "H4'2" BNG sing 123 n n 
C5' C6' BNG sing 124 n n 
C5' "H5'1" BNG sing 125 n n 
C5' "H5'2" BNG sing 126 n n 
C6' C7' BNG sing 127 n n 
C6' "H6'1" BNG sing 128 n n 
C6' "H6'2" BNG sing 129 n n 
C7' C8' BNG sing 130 n n 
C7' "H7'1" BNG sing 131 n n 
C7' "H7'2" BNG sing 132 n n 
C8' C9' BNG sing 133 n n 
C8' "H8'1" BNG sing 134 n n 
C8' "H8'2" BNG sing 135 n n 
C9' "H9'1" BNG sing 136 n n 
C9' "H9'2" BNG sing 137 n n 
C9' "H9'3" BNG sing 138 n n 
O2 HO2 BNG sing 139 n n 
O3 HO3 BNG sing 140 n n 
O4 HO4 BNG sing 141 n n 
O6 HO6 BNG sing 142 n n 
#
_pdbx_chem_comp_identifier.comp_id            BNG 
_pdbx_chem_comp_identifier.identifier         b-nonylglucoside 
_pdbx_chem_comp_identifier.type               'IUPAC CARBOHYDRATE SYMBOL' 
_pdbx_chem_comp_identifier.program            PDB-CARE 
_pdbx_chem_comp_identifier.program_version    1 
#
_atom_sites.entry_id                     4N4D 
_atom_sites.fract_transf_matrix[1][1]    0.015833 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001155 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011868 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007879 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 XX8 A 1 201 2 XX8 XX8 . 
D 3 BNG A 1 202 4 BNG BNG . 
E 3 BNG A 1 203 5 BNG BNG . 
F 3 BNG A 1 204 6 BNG BNG . 
G 4 PG0 A 1 205 1 PG0 PG0 . 
H 4 PG0 A 1 206 2 PG0 PG0 . 
I 5 PEG A 1 207 3 PEG PEG . 
J 5 PEG A 1 208 8 PEG PEG . 
K 5 PEG A 1 209 13 PEG PEG . 
L 5 PEG A 1 210 17 PEG PEG . 
M 5 PEG A 1 211 18 PEG PEG . 
N 5 PEG A 1 212 19 PEG PEG . 
O 6 PG4 A 1 213 2 PG4 PG4 . 
P 7 PGE A 1 214 2 PGE PGE . 
Q 7 PGE A 1 215 3 PGE PGE . 
R 7 PGE A 1 216 5 PGE PGE . 
S 7 PGE A 1 217 6 PGE PGE . 
T 8 1PE A 1 218 1 1PE 1PE . 
U 2 XX8 B 1 201 1 XX8 XX8 . 
V 3 BNG B 1 202 2 BNG BNG . 
W 3 BNG B 1 203 3 BNG BNG . 
X 4 PG0 B 1 204 4 PG0 PG0 . 
Y 5 PEG B 1 205 14 PEG PEG . 
Z 5 PEG B 1 206 20 PEG PEG . 
AA 6 PG4 B 1 207 4 PG4 PG4 . 
BA 9 P33 B 1 208 3 P33 P33 . 
CA 7 PGE B 1 209 4 PGE PGE . 
DA 7 PGE B 1 210 7 PGE PGE . 
EA 8 1PE B 1 211 2 1PE 1PE . 
FA 10 CL B 1 212 1 CL CL . 
GA 11 HOH A 1 301 2 HOH HOH . 
GA 11 HOH A 2 302 9 HOH HOH . 
GA 11 HOH A 3 303 10 HOH HOH . 
GA 11 HOH A 4 304 37 HOH HOH . 
GA 11 HOH A 5 305 38 HOH HOH . 
GA 11 HOH A 6 306 40 HOH HOH . 
GA 11 HOH A 7 307 41 HOH HOH . 
GA 11 HOH A 8 308 42 HOH HOH . 
GA 11 HOH A 9 309 44 HOH HOH . 
GA 11 HOH A 10 310 45 HOH HOH . 
GA 11 HOH A 11 311 46 HOH HOH . 
GA 11 HOH A 12 312 47 HOH HOH . 
GA 11 HOH A 13 313 48 HOH HOH . 
GA 11 HOH A 14 314 49 HOH HOH . 
GA 11 HOH A 15 315 50 HOH HOH . 
GA 11 HOH A 16 316 51 HOH HOH . 
GA 11 HOH A 17 317 52 HOH HOH . 
GA 11 HOH A 18 318 67 HOH HOH . 
GA 11 HOH A 19 319 71 HOH HOH . 
GA 11 HOH A 20 320 72 HOH HOH . 
HA 11 HOH B 1 301 1 HOH HOH . 
HA 11 HOH B 2 302 12 HOH HOH . 
HA 11 HOH B 3 303 13 HOH HOH . 
HA 11 HOH B 4 304 14 HOH HOH . 
HA 11 HOH B 5 305 15 HOH HOH . 
HA 11 HOH B 6 306 16 HOH HOH . 
HA 11 HOH B 7 307 18 HOH HOH . 
HA 11 HOH B 8 308 19 HOH HOH . 
HA 11 HOH B 9 309 20 HOH HOH . 
HA 11 HOH B 10 310 21 HOH HOH . 
HA 11 HOH B 11 311 34 HOH HOH . 
HA 11 HOH B 12 312 36 HOH HOH . 
HA 11 HOH B 13 313 54 HOH HOH . 
HA 11 HOH B 14 314 55 HOH HOH . 
HA 11 HOH B 15 315 56 HOH HOH . 
HA 11 HOH B 16 316 58 HOH HOH . 
HA 11 HOH B 17 317 59 HOH HOH . 
HA 11 HOH B 18 318 60 HOH HOH . 
HA 11 HOH B 19 319 61 HOH HOH . 
HA 11 HOH B 20 320 62 HOH HOH . 
HA 11 HOH B 21 321 63 HOH HOH . 
HA 11 HOH B 22 322 64 HOH HOH . 
HA 11 HOH B 23 323 65 HOH HOH . 
HA 11 HOH B 24 324 73 HOH HOH . 
HA 11 HOH B 25 325 74 HOH HOH . 
HA 11 HOH B 26 326 75 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 BNG . . . F 3 29.102 31.109 32.984 1 111.17 ? C1 BNG 204 A 1 
HETATM 2 C C2 BNG . . . F 3 29.992 32.353 33.139 1 103.75 ? C2 BNG 204 A 1 
HETATM 3 C C3 BNG . . . F 3 29.653 33.394 32.086 1 101.59 ? C3 BNG 204 A 1 
HETATM 4 C C4 BNG . . . F 3 29.622 32.716 30.732 1 101.72 ? C4 BNG 204 A 1 
HETATM 5 C C5 BNG . . . F 3 28.649 31.547 30.795 1 101.3 ? C5 BNG 204 A 1 
HETATM 6 C C6 BNG . . . F 3 28.45 30.935 29.428 1 95.41 ? C6 BNG 204 A 1 
HETATM 7 C C1' BNG . . . F 3 28.522 29.309 34.506 1 117.39 ? C1' BNG 204 A 1 
HETATM 8 C C2' BNG . . . F 3 28.862 29.091 35.999 1 118.51 ? C2' BNG 204 A 1 
HETATM 9 C C3' BNG . . . F 3 30.213 28.249 36.191 1 80.44 ? C3' BNG 204 A 1 
HETATM 10 C C4' BNG . . . F 3 30.604 27.589 34.845 1 78.8 ? C4' BNG 204 A 1 
HETATM 11 C C5' BNG . . . F 3 31.514 26.354 35.032 1 74.02 ? C5' BNG 204 A 1 
HETATM 12 C C6' BNG . . . F 3 30.839 25.193 34.266 1 74.79 ? C6' BNG 204 A 1 
HETATM 13 C C7' BNG . . . F 3 31.852 24.203 33.62 1 59.81 ? C7' BNG 204 A 1 
HETATM 14 C C8' BNG . . . F 3 31.241 22.793 33.7 1 50.67 ? C8' BNG 204 A 1 
HETATM 15 C C9' BNG . . . F 3 30.924 22.27 32.323 1 47.31 ? C9' BNG 204 A 1 
HETATM 16 O O1 BNG . . . F 3 29.554 30.098 33.875 1 116.78 ? O1 BNG 204 A 1 
HETATM 17 O O2 BNG . . . F 3 29.894 32.916 34.424 1 93.56 ? O2 BNG 204 A 1 
HETATM 18 O O3 BNG . . . F 3 30.657 34.383 32.099 1 102.24 ? O3 BNG 204 A 1 
HETATM 19 O O4 BNG . . . F 3 29.248 33.613 29.722 1 98.48 ? O4 BNG 204 A 1 
HETATM 20 O O5 BNG . . . F 3 29.14 30.582 31.696 1 104.61 ? O5 BNG 204 A 1 
HETATM 21 O O6 BNG . . . F 3 29.665 30.415 28.901 1 91.41 ? O6 BNG 204 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           243 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           21 
#