data_4N4W # _model_server_result.job_id z3sv0432-nGh7J7Gq_v5NQ _model_server_result.datetime_utc '2024-11-21 13:53:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4n4w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":605}' # _entry.id 4N4W # _exptl.entry_id 4N4W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 373.494 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (E)-N-(4-benzylpiperazin-1-yl)-1-(3,5-dimethyl-1-phenyl-1H-pyrazol-4-yl)methanimine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4N4W _cell.length_a 84.64 _cell.length_b 110.88 _cell.length_c 145.21 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4N4W _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_554 -x,y,-z-1/2 -1 0 0 0 1 0 0 0 -1 0 0 -72.605 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 2 4 3 MAN BMA C1 O1 . O3 HO3 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 784 NAG 2 n B NAG 2 B 2 NAG A 785 NAG 2 n B BMA 3 B 3 BMA A 786 BMA 2 n B MAN 4 B 4 MAN A 787 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 113 A CYS 193 1_555 A SG CYS 133 A CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf2 A SG CYS 137 A CYS 217 1_555 A SG CYS 215 A CYS 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf3 A SG CYS 234 A CYS 314 1_555 A SG CYS 310 A CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf4 A SG CYS 410 A CYS 490 1_555 A SG CYS 427 A CYS 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? covale ? covale1 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.386 ? covale ? covale2 B O4 NAG . B NAG 2 1_555 B C1 BMA . B BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.469 ? covale ? covale3 B O3 BMA . B BMA 3 1_555 B C1 MAN . B MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.471 ? metalc ? metalc1 A ND1 HIS 66 A HIS 63 1_555 D ZN ZN . A ZN 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? metalc ? metalc2 A OD1 ASP 69 A ASP 66 1_555 D ZN ZN . A ZN 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.902 ? metalc ? metalc3 A NE2 HIS 353 A HIS 433 1_555 E ZN ZN . A ZN 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.91 ? metalc ? metalc4 E ZN ZN . A ZN 607 1_555 J O HOH . A HOH 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? # _chem_comp.formula 'C23 H27 N5' _chem_comp.formula_weight 373.494 _chem_comp.id SNT _chem_comp.mon_nstd_flag . _chem_comp.name (E)-N-(4-benzylpiperazin-1-yl)-1-(3,5-dimethyl-1-phenyl-1H-pyrazol-4-yl)methanimine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms SANT-1 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C1 SNT doub 478 n y C2 C3 SNT sing 479 n y C1 C15 SNT sing 480 n y C3 C4 SNT doub 481 n y C15 C16 SNT doub 482 n y C4 C16 SNT sing 483 n y C4 N1 SNT sing 484 n n N1 N5 SNT sing 485 n y N1 C5 SNT sing 486 n y N5 C17 SNT doub 487 n y C5 C23 SNT sing 488 n n C5 C6 SNT doub 489 n y C17 C18 SNT sing 490 n n C17 C6 SNT sing 491 n y C6 C7 SNT sing 492 n n C7 N2 SNT doub 493 e n N2 N3 SNT sing 494 n n N3 C20 SNT sing 495 n n N3 C8 SNT sing 496 n n C20 C19 SNT sing 497 n n C8 C9 SNT sing 498 n n C19 N4 SNT sing 499 n n C9 N4 SNT sing 500 n n N4 C10 SNT sing 501 n n C10 C11 SNT sing 502 n n C11 C22 SNT doub 503 n y C11 C12 SNT sing 504 n y C22 C21 SNT sing 505 n y C12 C13 SNT doub 506 n y C21 C14 SNT doub 507 n y C13 C14 SNT sing 508 n y C3 H1 SNT sing 509 n n C2 H2 SNT sing 510 n n C1 H3 SNT sing 511 n n C7 H5 SNT sing 512 n n C8 H6 SNT sing 513 n n C8 H7 SNT sing 514 n n C9 H8 SNT sing 515 n n C9 H9 SNT sing 516 n n C10 H10 SNT sing 517 n n C10 H11 SNT sing 518 n n C12 H12 SNT sing 519 n n C13 H13 SNT sing 520 n n C14 H14 SNT sing 521 n n C15 H15 SNT sing 522 n n C16 H16 SNT sing 523 n n C18 H17 SNT sing 524 n n C18 H18 SNT sing 525 n n C18 H19 SNT sing 526 n n C19 H20 SNT sing 527 n n C19 H21 SNT sing 528 n n C20 H22 SNT sing 529 n n C20 H23 SNT sing 530 n n C21 H24 SNT sing 531 n n C22 H25 SNT sing 532 n n C23 H26 SNT sing 533 n n C23 H27 SNT sing 534 n n C23 H28 SNT sing 535 n n # _atom_sites.entry_id 4N4W _atom_sites.fract_transf_matrix[1][1] 0.011815 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009019 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006887 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SNT A 1 605 1 SNT RES . D 4 ZN A 1 606 1 ZN ZN . E 4 ZN A 1 607 2 ZN ZN . F 5 OLC A 1 608 3 OLC OLC . G 5 OLC A 1 609 4 OLC OLC . H 6 PEG A 1 610 5 PEG PEG . I 7 PG4 A 1 611 6 PG4 PG4 . J 8 HOH A 1 701 7 HOH HOH . J 8 HOH A 2 702 8 HOH HOH . J 8 HOH A 3 703 9 HOH HOH . J 8 HOH A 4 704 10 HOH HOH . J 8 HOH A 5 705 11 HOH HOH . J 8 HOH A 6 706 12 HOH HOH . J 8 HOH A 7 707 13 HOH HOH . J 8 HOH A 8 708 14 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 SNT . . . C 3 -11.712 -22.106 -14.587 1 75.79 ? C4 SNT 605 A 1 HETATM 2 C C3 SNT . . . C 3 -12.142 -21.633 -15.84 1 73.54 ? C3 SNT 605 A 1 HETATM 3 C C2 SNT . . . C 3 -11.325 -21.794 -16.961 1 72.63 ? C2 SNT 605 A 1 HETATM 4 C C1 SNT . . . C 3 -10.08 -22.416 -16.825 1 73.39 ? C1 SNT 605 A 1 HETATM 5 N N1 SNT . . . C 3 -12.519 -21.99 -13.522 1 76.62 ? N1 SNT 605 A 1 HETATM 6 N N2 SNT . . . C 3 -14.682 -21.25 -9.674 1 78.62 ? N2 SNT 605 A 1 HETATM 7 N N3 SNT . . . C 3 -15.046 -20.662 -8.523 1 78.25 ? N3 SNT 605 A 1 HETATM 8 N N4 SNT . . . C 3 -15.47 -20.471 -5.728 1 75.99 ? N4 SNT 605 A 1 HETATM 9 N N5 SNT . . . C 3 -13.547 -22.716 -13.374 1 77.07 ? N5 SNT 605 A 1 HETATM 10 C C5 SNT . . . C 3 -12.401 -21.199 -12.439 1 74.27 ? C5 SNT 605 A 1 HETATM 11 C C6 SNT . . . C 3 -13.421 -21.458 -11.606 1 76.8 ? C6 SNT 605 A 1 HETATM 12 C C7 SNT . . . C 3 -13.64 -20.836 -10.423 1 77.82 ? C7 SNT 605 A 1 HETATM 13 C C8 SNT . . . C 3 -13.986 -20.129 -7.625 1 77.81 ? C8 SNT 605 A 1 HETATM 14 C C9 SNT . . . C 3 -14.633 -19.464 -6.428 1 76.07 ? C9 SNT 605 A 1 HETATM 15 C C10 SNT . . . C 3 -15.972 -20.071 -4.395 1 72.4 ? C10 SNT 605 A 1 HETATM 16 C C11 SNT . . . C 3 -14.95 -19.94 -3.461 1 68.66 ? C11 SNT 605 A 1 HETATM 17 C C12 SNT . . . C 3 -14.308 -21.082 -2.978 1 67.01 ? C12 SNT 605 A 1 HETATM 18 C C13 SNT . . . C 3 -13.28 -20.922 -2.043 1 67.5 ? C13 SNT 605 A 1 HETATM 19 C C14 SNT . . . C 3 -12.907 -19.651 -1.582 1 67.22 ? C14 SNT 605 A 1 HETATM 20 C C15 SNT . . . C 3 -9.654 -22.9 -15.58 1 74.68 ? C15 SNT 605 A 1 HETATM 21 C C16 SNT . . . C 3 -10.477 -22.771 -14.461 1 74.94 ? C16 SNT 605 A 1 HETATM 22 C C17 SNT . . . C 3 -14.134 -22.416 -12.225 1 75.96 ? C17 SNT 605 A 1 HETATM 23 C C18 SNT . . . C 3 -15.391 -23.151 -11.784 1 73.53 ? C18 SNT 605 A 1 HETATM 24 C C19 SNT . . . C 3 -16.567 -20.952 -6.586 1 75.31 ? C19 SNT 605 A 1 HETATM 25 C C20 SNT . . . C 3 -15.965 -21.591 -7.82 1 76.3 ? C20 SNT 605 A 1 HETATM 26 C C21 SNT . . . C 3 -13.556 -18.514 -2.07 1 66.34 ? C21 SNT 605 A 1 HETATM 27 C C22 SNT . . . C 3 -14.573 -18.662 -3.012 1 66.93 ? C22 SNT 605 A 1 HETATM 28 C C23 SNT . . . C 3 -11.258 -20.199 -12.194 1 69.79 ? C23 SNT 605 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 249 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 28 #