data_4N4W
#
_model_server_result.job_id            XuICCUIvoVparFY1h31yHA 
_model_server_result.datetime_utc      '2024-11-21 13:57:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4n4w 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":608}' 
#
_entry.id    4N4W 
#
_exptl.entry_id    4N4W 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              356.54 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4N4W 
_cell.length_a            84.64 
_cell.length_b            110.88 
_cell.length_c            145.21 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4N4W 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_554 -x,y,-z-1/2 -1 0 0 0 1 0 0 0 -1 0 0 -72.605 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 F N N 
? 5 G N N 
#
_pdbx_entity_branch.entity_id    2 
_pdbx_entity_branch.type         oligosaccharide 
#
loop_
_pdbx_entity_branch_link.link_id
_pdbx_entity_branch_link.details
_pdbx_entity_branch_link.entity_id
_pdbx_entity_branch_link.entity_branch_list_num_1
_pdbx_entity_branch_link.entity_branch_list_num_2
_pdbx_entity_branch_link.comp_id_1
_pdbx_entity_branch_link.comp_id_2
_pdbx_entity_branch_link.atom_id_1
_pdbx_entity_branch_link.leaving_atom_id_1
_pdbx_entity_branch_link.atom_stereo_config_1
_pdbx_entity_branch_link.atom_id_2
_pdbx_entity_branch_link.leaving_atom_id_2
_pdbx_entity_branch_link.atom_stereo_config_2
_pdbx_entity_branch_link.value_order
1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 
2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing 
3 ? 2 4 3 MAN BMA C1 O1 . O3 HO3 . sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
2 n B NAG 1 B 1 NAG A 784 NAG 
2 n B NAG 2 B 2 NAG A 785 NAG 
2 n B BMA 3 B 3 BMA A 786 BMA 
2 n B MAN 4 B 4 MAN A 787 MAN 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 113 A CYS 193 1_555 A SG CYS 133 A CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf2 A SG CYS 137 A CYS 217 1_555 A SG CYS 215 A CYS 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf3 A SG CYS 234 A CYS 314 1_555 A SG CYS 310 A CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
disulf ? disulf4 A SG CYS 410 A CYS 490 1_555 A SG CYS 427 A CYS 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
covale ? covale1 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.386 ? 
covale ? covale2 B O4 NAG . B NAG 2 1_555 B C1 BMA . B BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.469 ? 
covale ? covale3 B O3 BMA . B BMA 3 1_555 B C1 MAN . B MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.471 ? 
metalc ? metalc1 A ND1 HIS 66 A HIS 63 1_555 D ZN ZN . A ZN 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? 
metalc ? metalc2 A OD1 ASP 69 A ASP 66 1_555 D ZN ZN . A ZN 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.902 ? 
metalc ? metalc3 A NE2 HIS 353 A HIS 433 1_555 E ZN ZN . A ZN 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.91 ? 
metalc ? metalc4 E ZN ZN . A ZN 607 1_555 J O HOH . A HOH 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? 
#
_chem_comp.formula           'C21 H40 O4' 
_chem_comp.formula_weight    356.54 
_chem_comp.id                OLC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     1-Oleoyl-R-glycerol 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C18 C17 OLC sing 315 n n 
C10 C9 OLC doub 316 n n 
C10 C11 OLC sing 317 n n 
C9 C8 OLC sing 318 n n 
C17 C16 OLC sing 319 z n 
C11 C12 OLC sing 320 n n 
C8 C7 OLC sing 321 n n 
C24 C22 OLC sing 322 n n 
C24 O25 OLC sing 323 n n 
C16 C15 OLC sing 324 n n 
C12 C13 OLC sing 325 n n 
C7 C6 OLC sing 326 n n 
C15 C14 OLC sing 327 n n 
C13 C14 OLC sing 328 n n 
C6 C5 OLC sing 329 n n 
C5 C4 OLC sing 330 n n 
C4 C3 OLC sing 331 n n 
C3 C2 OLC sing 332 n n 
C2 C1 OLC sing 333 n n 
C21 C22 OLC sing 334 n n 
C21 O20 OLC sing 335 n n 
C1 O19 OLC doub 336 n n 
C1 O20 OLC sing 337 n n 
C22 O23 OLC sing 338 n n 
C18 H18 OLC sing 339 n n 
C18 H18A OLC sing 340 n n 
C18 H18B OLC sing 341 n n 
C10 H10 OLC sing 342 n n 
C9 H9 OLC sing 343 n n 
C17 H17 OLC sing 344 n n 
C17 H17A OLC sing 345 n n 
C11 H11 OLC sing 346 n n 
C11 H11A OLC sing 347 n n 
C8 H8 OLC sing 348 n n 
C8 H8A OLC sing 349 n n 
C24 H24 OLC sing 350 n n 
C24 H24A OLC sing 351 n n 
C16 H16 OLC sing 352 n n 
C16 H16A OLC sing 353 n n 
C12 H12 OLC sing 354 n n 
C12 H12A OLC sing 355 n n 
C7 H7 OLC sing 356 n n 
C7 H7A OLC sing 357 n n 
C15 H15 OLC sing 358 n n 
C15 H15A OLC sing 359 n n 
C13 H13 OLC sing 360 n n 
C13 H13A OLC sing 361 n n 
C6 H6 OLC sing 362 n n 
C6 H6A OLC sing 363 n n 
C14 H14 OLC sing 364 n n 
C14 H14A OLC sing 365 n n 
C5 H5 OLC sing 366 n n 
C5 H5A OLC sing 367 n n 
C4 H4 OLC sing 368 n n 
C4 H4A OLC sing 369 n n 
C3 H3 OLC sing 370 n n 
C3 H3A OLC sing 371 n n 
C2 H2 OLC sing 372 n n 
C2 H2A OLC sing 373 n n 
C21 H21 OLC sing 374 n n 
C21 H21A OLC sing 375 n n 
C22 H22 OLC sing 376 n n 
O25 HO25 OLC sing 377 n n 
O23 HO23 OLC sing 378 n n 
#
_atom_sites.entry_id                     4N4W 
_atom_sites.fract_transf_matrix[1][1]    0.011815 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009019 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006887 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 SNT A 1 605 1 SNT RES . 
D 4 ZN A 1 606 1 ZN ZN . 
E 4 ZN A 1 607 2 ZN ZN . 
F 5 OLC A 1 608 3 OLC OLC . 
G 5 OLC A 1 609 4 OLC OLC . 
H 6 PEG A 1 610 5 PEG PEG . 
I 7 PG4 A 1 611 6 PG4 PG4 . 
J 8 HOH A 1 701 7 HOH HOH . 
J 8 HOH A 2 702 8 HOH HOH . 
J 8 HOH A 3 703 9 HOH HOH . 
J 8 HOH A 4 704 10 HOH HOH . 
J 8 HOH A 5 705 11 HOH HOH . 
J 8 HOH A 6 706 12 HOH HOH . 
J 8 HOH A 7 707 13 HOH HOH . 
J 8 HOH A 8 708 14 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C8 OLC . . . F 5 -2.329 -11.885 -5.818 1 86.67 ? C8 OLC 608 A 1 
HETATM 2 C C24 OLC . . . F 5 0.017 -16.49 -16.904 1 95.62 ? C24 OLC 608 A 1 
HETATM 3 C C7 OLC . . . F 5 -1.813 -12.436 -7.144 1 88.44 ? C7 OLC 608 A 1 
HETATM 4 C C6 OLC . . . F 5 -1.286 -13.863 -7.005 1 90.14 ? C6 OLC 608 A 1 
HETATM 5 C C5 OLC . . . F 5 -1.787 -14.73 -8.15 1 92.9 ? C5 OLC 608 A 1 
HETATM 6 C C4 OLC . . . F 5 -0.658 -15.479 -8.844 1 96.77 ? C4 OLC 608 A 1 
HETATM 7 C C3 OLC . . . F 5 -1.198 -16.406 -9.936 1 99.8 ? C3 OLC 608 A 1 
HETATM 8 C C2 OLC . . . F 5 -0.828 -15.923 -11.341 1 101.33 ? C2 OLC 608 A 1 
HETATM 9 C C21 OLC . . . F 5 0.165 -17.467 -14.569 1 99.81 ? C21 OLC 608 A 1 
HETATM 10 C C1 OLC . . . F 5 0.092 -16.864 -12.104 1 102.78 ? C1 OLC 608 A 1 
HETATM 11 C C22 OLC . . . F 5 0.933 -17.122 -15.847 1 98.81 ? C22 OLC 608 A 1 
HETATM 12 O O19 OLC . . . F 5 0.584 -17.861 -11.583 1 104.08 ? O19 OLC 608 A 1 
HETATM 13 O O25 OLC . . . F 5 -0.432 -17.452 -17.877 1 92.13 ? O25 OLC 608 A 1 
HETATM 14 O O23 OLC . . . F 5 2.062 -16.279 -15.562 1 99.59 ? O23 OLC 608 A 1 
HETATM 15 O O20 OLC . . . F 5 0.423 -16.554 -13.497 1 101.6 ? O20 OLC 608 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           246 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           15 
#