data_4N4W # _model_server_result.job_id X8Yv5qi470399awD0Z9gbw _model_server_result.datetime_utc '2024-11-21 13:53:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4n4w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":609}' # _entry.id 4N4W # _exptl.entry_id 4N4W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4N4W _cell.length_a 84.64 _cell.length_b 110.88 _cell.length_c 145.21 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4N4W _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_554 -x,y,-z-1/2 -1 0 0 0 1 0 0 0 -1 0 0 -72.605 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 G N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 2 4 3 MAN BMA C1 O1 . O3 HO3 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 784 NAG 2 n B NAG 2 B 2 NAG A 785 NAG 2 n B BMA 3 B 3 BMA A 786 BMA 2 n B MAN 4 B 4 MAN A 787 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 113 A CYS 193 1_555 A SG CYS 133 A CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf2 A SG CYS 137 A CYS 217 1_555 A SG CYS 215 A CYS 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf3 A SG CYS 234 A CYS 314 1_555 A SG CYS 310 A CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf4 A SG CYS 410 A CYS 490 1_555 A SG CYS 427 A CYS 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? covale ? covale1 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.386 ? covale ? covale2 B O4 NAG . B NAG 2 1_555 B C1 BMA . B BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.469 ? covale ? covale3 B O3 BMA . B BMA 3 1_555 B C1 MAN . B MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.471 ? metalc ? metalc1 A ND1 HIS 66 A HIS 63 1_555 D ZN ZN . A ZN 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? metalc ? metalc2 A OD1 ASP 69 A ASP 66 1_555 D ZN ZN . A ZN 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.902 ? metalc ? metalc3 A NE2 HIS 353 A HIS 433 1_555 E ZN ZN . A ZN 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.91 ? metalc ? metalc4 E ZN ZN . A ZN 607 1_555 J O HOH . A HOH 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 315 n n C10 C9 OLC doub 316 n n C10 C11 OLC sing 317 n n C9 C8 OLC sing 318 n n C17 C16 OLC sing 319 z n C11 C12 OLC sing 320 n n C8 C7 OLC sing 321 n n C24 C22 OLC sing 322 n n C24 O25 OLC sing 323 n n C16 C15 OLC sing 324 n n C12 C13 OLC sing 325 n n C7 C6 OLC sing 326 n n C15 C14 OLC sing 327 n n C13 C14 OLC sing 328 n n C6 C5 OLC sing 329 n n C5 C4 OLC sing 330 n n C4 C3 OLC sing 331 n n C3 C2 OLC sing 332 n n C2 C1 OLC sing 333 n n C21 C22 OLC sing 334 n n C21 O20 OLC sing 335 n n C1 O19 OLC doub 336 n n C1 O20 OLC sing 337 n n C22 O23 OLC sing 338 n n C18 H18 OLC sing 339 n n C18 H18A OLC sing 340 n n C18 H18B OLC sing 341 n n C10 H10 OLC sing 342 n n C9 H9 OLC sing 343 n n C17 H17 OLC sing 344 n n C17 H17A OLC sing 345 n n C11 H11 OLC sing 346 n n C11 H11A OLC sing 347 n n C8 H8 OLC sing 348 n n C8 H8A OLC sing 349 n n C24 H24 OLC sing 350 n n C24 H24A OLC sing 351 n n C16 H16 OLC sing 352 n n C16 H16A OLC sing 353 n n C12 H12 OLC sing 354 n n C12 H12A OLC sing 355 n n C7 H7 OLC sing 356 n n C7 H7A OLC sing 357 n n C15 H15 OLC sing 358 n n C15 H15A OLC sing 359 n n C13 H13 OLC sing 360 n n C13 H13A OLC sing 361 n n C6 H6 OLC sing 362 n n C6 H6A OLC sing 363 n n C14 H14 OLC sing 364 n n C14 H14A OLC sing 365 n n C5 H5 OLC sing 366 n n C5 H5A OLC sing 367 n n C4 H4 OLC sing 368 n n C4 H4A OLC sing 369 n n C3 H3 OLC sing 370 n n C3 H3A OLC sing 371 n n C2 H2 OLC sing 372 n n C2 H2A OLC sing 373 n n C21 H21 OLC sing 374 n n C21 H21A OLC sing 375 n n C22 H22 OLC sing 376 n n O25 HO25 OLC sing 377 n n O23 HO23 OLC sing 378 n n # _atom_sites.entry_id 4N4W _atom_sites.fract_transf_matrix[1][1] 0.011815 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009019 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006887 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SNT A 1 605 1 SNT RES . D 4 ZN A 1 606 1 ZN ZN . E 4 ZN A 1 607 2 ZN ZN . F 5 OLC A 1 608 3 OLC OLC . G 5 OLC A 1 609 4 OLC OLC . H 6 PEG A 1 610 5 PEG PEG . I 7 PG4 A 1 611 6 PG4 PG4 . J 8 HOH A 1 701 7 HOH HOH . J 8 HOH A 2 702 8 HOH HOH . J 8 HOH A 3 703 9 HOH HOH . J 8 HOH A 4 704 10 HOH HOH . J 8 HOH A 5 705 11 HOH HOH . J 8 HOH A 6 706 12 HOH HOH . J 8 HOH A 7 707 13 HOH HOH . J 8 HOH A 8 708 14 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C24 OLC . . . G 5 -26.28 -31.996 14.683 1 95.39 ? C24 OLC 609 A 1 HETATM 2 C C7 OLC . . . G 5 -23.058 -33.033 3.31 1 87.74 ? C7 OLC 609 A 1 HETATM 3 C C6 OLC . . . G 5 -23.57 -33.484 4.675 1 89.7 ? C6 OLC 609 A 1 HETATM 4 C C5 OLC . . . G 5 -22.616 -33.136 5.814 1 91.59 ? C5 OLC 609 A 1 HETATM 5 C C4 OLC . . . G 5 -22.999 -33.891 7.088 1 94.38 ? C4 OLC 609 A 1 HETATM 6 C C3 OLC . . . G 5 -22.676 -33.116 8.37 1 96.19 ? C3 OLC 609 A 1 HETATM 7 C C2 OLC . . . G 5 -23.291 -33.79 9.6 1 97.33 ? C2 OLC 609 A 1 HETATM 8 C C21 OLC . . . G 5 -24.649 -32.091 12.773 1 101.62 ? C21 OLC 609 A 1 HETATM 9 C C1 OLC . . . G 5 -23.197 -32.926 10.846 1 99.64 ? C1 OLC 609 A 1 HETATM 10 C C22 OLC . . . G 5 -26.141 -32.06 13.162 1 99.47 ? C22 OLC 609 A 1 HETATM 11 O O19 OLC . . . G 5 -22.127 -32.814 11.435 1 100.07 ? O19 OLC 609 A 1 HETATM 12 O O25 OLC . . . G 5 -26.012 -30.671 15.17 1 93.28 ? O25 OLC 609 A 1 HETATM 13 O O23 OLC . . . G 5 -26.848 -30.952 12.573 1 100.72 ? O23 OLC 609 A 1 HETATM 14 O O20 OLC . . . G 5 -24.387 -32.237 11.363 1 101.33 ? O20 OLC 609 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 14 #