data_4N54
#
_model_server_result.job_id            emg6Lrkq6-1yQgMOMg526w 
_model_server_result.datetime_utc      '2024-10-28 02:29:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4n54 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":402}' 
#
_entry.id    4N54 
#
_exptl.entry_id    4N54 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              180.156 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (1r,2r,3r,4r,5r,6r)-cyclohexane-1,2,3,4,5,6-hexol 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4N54 
_cell.length_a            85.25 
_cell.length_b            99.83 
_cell.length_c            192.51 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4N54 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 H N N 
? 3 K N N 
#
_chem_comp.formula           'C6 H12 O6' 
_chem_comp.formula_weight    180.156 
_chem_comp.id                2H3 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (1r,2r,3r,4r,5r,6r)-cyclohexane-1,2,3,4,5,6-hexol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     scyllo-inositol 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O4 C4 2H3 sing 1 n n 
O5 C5 2H3 sing 2 n n 
C5 C4 2H3 sing 3 n n 
C5 C6 2H3 sing 4 n n 
C4 C3 2H3 sing 5 n n 
C3 O3 2H3 sing 6 n n 
C3 C2 2H3 sing 7 n n 
O6 C6 2H3 sing 8 n n 
C6 C1 2H3 sing 9 n n 
O2 C2 2H3 sing 10 n n 
C1 C2 2H3 sing 11 n n 
C1 O1 2H3 sing 12 n n 
O3 H1 2H3 sing 13 n n 
C3 H2 2H3 sing 14 n n 
C4 H3 2H3 sing 15 n n 
O4 H4 2H3 sing 16 n n 
C5 H5 2H3 sing 17 n n 
O5 H6 2H3 sing 18 n n 
C6 H7 2H3 sing 19 n n 
O6 H8 2H3 sing 20 n n 
C1 H9 2H3 sing 21 n n 
O1 H10 2H3 sing 22 n n 
C2 H11 2H3 sing 23 n n 
O2 H12 2H3 sing 24 n n 
#
_atom_sites.entry_id                     4N54 
_atom_sites.fract_transf_matrix[1][1]    0.01173 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010017 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005195 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 NAI A 1 401 400 NAI NAI . 
F 3 2H3 A 1 402 500 2H3 LIG . 
G 2 NAI B 1 401 400 NAI NAI . 
H 3 2H3 B 1 402 500 2H3 LIG . 
I 2 NAI C 1 400 400 NAI NAI . 
J 2 NAI D 1 401 400 NAI NAI . 
K 3 2H3 D 1 402 500 2H3 LIG . 
L 4 HOH A 1 501 5 HOH HOH . 
L 4 HOH A 2 502 6 HOH HOH . 
L 4 HOH A 3 503 13 HOH HOH . 
L 4 HOH A 4 504 15 HOH HOH . 
L 4 HOH A 5 505 16 HOH HOH . 
L 4 HOH A 6 506 18 HOH HOH . 
L 4 HOH A 7 507 23 HOH HOH . 
L 4 HOH A 8 508 29 HOH HOH . 
L 4 HOH A 9 509 30 HOH HOH . 
L 4 HOH A 10 510 32 HOH HOH . 
L 4 HOH A 11 511 37 HOH HOH . 
L 4 HOH A 12 512 44 HOH HOH . 
L 4 HOH A 13 513 49 HOH HOH . 
L 4 HOH A 14 514 57 HOH HOH . 
L 4 HOH A 15 515 58 HOH HOH . 
L 4 HOH A 16 516 61 HOH HOH . 
L 4 HOH A 17 517 63 HOH HOH . 
L 4 HOH A 18 518 65 HOH HOH . 
L 4 HOH A 19 519 66 HOH HOH . 
L 4 HOH A 20 520 67 HOH HOH . 
L 4 HOH A 21 521 70 HOH HOH . 
L 4 HOH A 22 522 76 HOH HOH . 
L 4 HOH A 23 523 77 HOH HOH . 
L 4 HOH A 24 524 79 HOH HOH . 
L 4 HOH A 25 525 80 HOH HOH . 
L 4 HOH A 26 526 83 HOH HOH . 
L 4 HOH A 27 527 86 HOH HOH . 
L 4 HOH A 28 528 88 HOH HOH . 
L 4 HOH A 29 529 89 HOH HOH . 
L 4 HOH A 30 530 92 HOH HOH . 
L 4 HOH A 31 531 94 HOH HOH . 
L 4 HOH A 32 532 95 HOH HOH . 
L 4 HOH A 33 533 97 HOH HOH . 
L 4 HOH A 34 534 102 HOH HOH . 
L 4 HOH A 35 535 103 HOH HOH . 
L 4 HOH A 36 536 104 HOH HOH . 
L 4 HOH A 37 537 106 HOH HOH . 
L 4 HOH A 38 538 107 HOH HOH . 
L 4 HOH A 39 539 112 HOH HOH . 
L 4 HOH A 40 540 113 HOH HOH . 
L 4 HOH A 41 541 114 HOH HOH . 
L 4 HOH A 42 542 116 HOH HOH . 
L 4 HOH A 43 543 122 HOH HOH . 
L 4 HOH A 44 544 128 HOH HOH . 
L 4 HOH A 45 545 129 HOH HOH . 
L 4 HOH A 46 546 132 HOH HOH . 
L 4 HOH A 47 547 134 HOH HOH . 
L 4 HOH A 48 548 139 HOH HOH . 
L 4 HOH A 49 549 140 HOH HOH . 
L 4 HOH A 50 550 142 HOH HOH . 
L 4 HOH A 51 551 148 HOH HOH . 
L 4 HOH A 52 552 152 HOH HOH . 
L 4 HOH A 53 553 155 HOH HOH . 
L 4 HOH A 54 554 158 HOH HOH . 
L 4 HOH A 55 555 159 HOH HOH . 
L 4 HOH A 56 556 162 HOH HOH . 
L 4 HOH A 57 557 163 HOH HOH . 
L 4 HOH A 58 558 164 HOH HOH . 
L 4 HOH A 59 559 167 HOH HOH . 
L 4 HOH A 60 560 170 HOH HOH . 
L 4 HOH A 61 561 173 HOH HOH . 
L 4 HOH A 62 562 183 HOH HOH . 
M 4 HOH B 1 501 2 HOH HOH . 
M 4 HOH B 2 502 3 HOH HOH . 
M 4 HOH B 3 503 7 HOH HOH . 
M 4 HOH B 4 504 10 HOH HOH . 
M 4 HOH B 5 505 12 HOH HOH . 
M 4 HOH B 6 506 17 HOH HOH . 
M 4 HOH B 7 507 19 HOH HOH . 
M 4 HOH B 8 508 24 HOH HOH . 
M 4 HOH B 9 509 27 HOH HOH . 
M 4 HOH B 10 510 34 HOH HOH . 
M 4 HOH B 11 511 38 HOH HOH . 
M 4 HOH B 12 512 40 HOH HOH . 
M 4 HOH B 13 513 41 HOH HOH . 
M 4 HOH B 14 514 42 HOH HOH . 
M 4 HOH B 15 515 45 HOH HOH . 
M 4 HOH B 16 516 46 HOH HOH . 
M 4 HOH B 17 517 52 HOH HOH . 
M 4 HOH B 18 518 53 HOH HOH . 
M 4 HOH B 19 519 55 HOH HOH . 
M 4 HOH B 20 520 74 HOH HOH . 
M 4 HOH B 21 521 75 HOH HOH . 
M 4 HOH B 22 522 82 HOH HOH . 
M 4 HOH B 23 523 85 HOH HOH . 
M 4 HOH B 24 524 93 HOH HOH . 
M 4 HOH B 25 525 96 HOH HOH . 
M 4 HOH B 26 526 98 HOH HOH . 
M 4 HOH B 27 527 100 HOH HOH . 
M 4 HOH B 28 528 105 HOH HOH . 
M 4 HOH B 29 529 108 HOH HOH . 
M 4 HOH B 30 530 109 HOH HOH . 
M 4 HOH B 31 531 110 HOH HOH . 
M 4 HOH B 32 532 111 HOH HOH . 
M 4 HOH B 33 533 115 HOH HOH . 
M 4 HOH B 34 534 119 HOH HOH . 
M 4 HOH B 35 535 120 HOH HOH . 
M 4 HOH B 36 536 123 HOH HOH . 
M 4 HOH B 37 537 126 HOH HOH . 
M 4 HOH B 38 538 133 HOH HOH . 
M 4 HOH B 39 539 135 HOH HOH . 
M 4 HOH B 40 540 138 HOH HOH . 
M 4 HOH B 41 541 143 HOH HOH . 
M 4 HOH B 42 542 147 HOH HOH . 
M 4 HOH B 43 543 151 HOH HOH . 
M 4 HOH B 44 544 153 HOH HOH . 
M 4 HOH B 45 545 154 HOH HOH . 
M 4 HOH B 46 546 156 HOH HOH . 
M 4 HOH B 47 547 160 HOH HOH . 
M 4 HOH B 48 548 165 HOH HOH . 
M 4 HOH B 49 549 169 HOH HOH . 
M 4 HOH B 50 550 171 HOH HOH . 
M 4 HOH B 51 551 177 HOH HOH . 
M 4 HOH B 52 552 179 HOH HOH . 
M 4 HOH B 53 553 180 HOH HOH . 
M 4 HOH B 54 554 182 HOH HOH . 
N 4 HOH C 1 501 1 HOH HOH . 
N 4 HOH C 2 502 4 HOH HOH . 
N 4 HOH C 3 503 8 HOH HOH . 
N 4 HOH C 4 504 9 HOH HOH . 
N 4 HOH C 5 505 11 HOH HOH . 
N 4 HOH C 6 506 20 HOH HOH . 
N 4 HOH C 7 507 21 HOH HOH . 
N 4 HOH C 8 508 33 HOH HOH . 
N 4 HOH C 9 509 35 HOH HOH . 
N 4 HOH C 10 510 36 HOH HOH . 
N 4 HOH C 11 511 39 HOH HOH . 
N 4 HOH C 12 512 47 HOH HOH . 
N 4 HOH C 13 513 62 HOH HOH . 
N 4 HOH C 14 514 69 HOH HOH . 
N 4 HOH C 15 515 71 HOH HOH . 
N 4 HOH C 16 516 72 HOH HOH . 
N 4 HOH C 17 517 81 HOH HOH . 
N 4 HOH C 18 518 87 HOH HOH . 
N 4 HOH C 19 519 91 HOH HOH . 
N 4 HOH C 20 520 99 HOH HOH . 
N 4 HOH C 21 521 101 HOH HOH . 
N 4 HOH C 22 522 127 HOH HOH . 
N 4 HOH C 23 523 130 HOH HOH . 
N 4 HOH C 24 524 136 HOH HOH . 
N 4 HOH C 25 525 145 HOH HOH . 
N 4 HOH C 26 526 168 HOH HOH . 
N 4 HOH C 27 527 172 HOH HOH . 
N 4 HOH C 28 528 176 HOH HOH . 
O 4 HOH D 1 501 14 HOH HOH . 
O 4 HOH D 2 502 22 HOH HOH . 
O 4 HOH D 3 503 25 HOH HOH . 
O 4 HOH D 4 504 26 HOH HOH . 
O 4 HOH D 5 505 28 HOH HOH . 
O 4 HOH D 6 506 31 HOH HOH . 
O 4 HOH D 7 507 43 HOH HOH . 
O 4 HOH D 8 508 48 HOH HOH . 
O 4 HOH D 9 509 50 HOH HOH . 
O 4 HOH D 10 510 51 HOH HOH . 
O 4 HOH D 11 511 54 HOH HOH . 
O 4 HOH D 12 512 56 HOH HOH . 
O 4 HOH D 13 513 59 HOH HOH . 
O 4 HOH D 14 514 60 HOH HOH . 
O 4 HOH D 15 515 64 HOH HOH . 
O 4 HOH D 16 516 68 HOH HOH . 
O 4 HOH D 17 517 73 HOH HOH . 
O 4 HOH D 18 518 78 HOH HOH . 
O 4 HOH D 19 519 84 HOH HOH . 
O 4 HOH D 20 520 90 HOH HOH . 
O 4 HOH D 21 521 117 HOH HOH . 
O 4 HOH D 22 522 118 HOH HOH . 
O 4 HOH D 23 523 121 HOH HOH . 
O 4 HOH D 24 524 124 HOH HOH . 
O 4 HOH D 25 525 125 HOH HOH . 
O 4 HOH D 26 526 131 HOH HOH . 
O 4 HOH D 27 527 137 HOH HOH . 
O 4 HOH D 28 528 141 HOH HOH . 
O 4 HOH D 29 529 144 HOH HOH . 
O 4 HOH D 30 530 146 HOH HOH . 
O 4 HOH D 31 531 149 HOH HOH . 
O 4 HOH D 32 532 150 HOH HOH . 
O 4 HOH D 33 533 157 HOH HOH . 
O 4 HOH D 34 534 161 HOH HOH . 
O 4 HOH D 35 535 166 HOH HOH . 
O 4 HOH D 36 536 174 HOH HOH . 
O 4 HOH D 37 537 175 HOH HOH . 
O 4 HOH D 38 538 178 HOH HOH . 
O 4 HOH D 39 539 181 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O3 2H3 . . . H 3 38.827 6.221 30.54 1 36.44 ? O3 2H3 402 B 1 
HETATM 2 C C3 2H3 . . . H 3 39.524 5.079 30.819 1 44.91 ? C3 2H3 402 B 1 
HETATM 3 C C4 2H3 . . . H 3 38.564 3.934 30.89 1 45.8 ? C4 2H3 402 B 1 
HETATM 4 O O4 2H3 . . . H 3 37.722 4.108 31.962 1 37.29 ? O4 2H3 402 B 1 
HETATM 5 C C5 2H3 . . . H 3 39.318 2.664 31.161 1 44.4 ? C5 2H3 402 B 1 
HETATM 6 O O5 2H3 . . . H 3 38.475 1.595 31.244 1 40.28 ? O5 2H3 402 B 1 
HETATM 7 C C6 2H3 . . . H 3 40.288 2.378 30.071 1 42.03 ? C6 2H3 402 B 1 
HETATM 8 O O6 2H3 . . . H 3 40.971 1.25 30.408 1 43.37 ? O6 2H3 402 B 1 
HETATM 9 C C1 2H3 . . . H 3 41.271 3.484 29.897 1 46.87 ? C1 2H3 402 B 1 
HETATM 10 O O1 2H3 . . . H 3 41.956 3.286 28.725 1 42.38 ? O1 2H3 402 B 1 
HETATM 11 C C2 2H3 . . . H 3 40.522 4.916 29.732 1 43.17 ? C2 2H3 402 B 1 
HETATM 12 O O2 2H3 . . . H 3 41.394 5.974 29.752 1 47.33 ? O2 2H3 402 B 1 
#
_model_server_stats.io_time_ms              62 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           314 
_model_server_stats.encode_time_ms          62 
_model_server_stats.element_count           12 
#