data_4N5J # _model_server_result.job_id 1keBUdtkJQUCjHeuBRgrdg _model_server_result.datetime_utc '2024-10-17 23:56:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4n5j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":404}' # _entry.id 4N5J # _exptl.entry_id 4N5J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4N5J _cell.length_a 154.513 _cell.length_b 154.513 _cell.length_c 154.513 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4N5J _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA hexameric 6 author_and_software_defined_assembly 1 PISA hexameric 6 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,I 1 1,2,3 C,D,J,K 2 1,4,5 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_544 -z,x-1/2,-y-1/2 0 0 -1 1 0 0 0 -1 0 0 -77.2565 -77.2565 3 'crystal symmetry operation' 11_545 y+1/2,-z-1/2,-x 0 1 0 0 0 -1 -1 0 0 77.2565 -77.2565 0 4 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 5 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n E NAG 1 E 1 NAG A 521 NAG 3 n E NAG 2 E 2 NAG A 522 NAG 3 n E BMA 3 E 3 BMA A 523 BMA # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 4 A CYS 14 1_555 B SG CYS 137 B CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 A SG CYS 42 A CYS 52 1_555 A SG CYS 268 A CYS 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 A SG CYS 54 A CYS 64 1_555 A SG CYS 66 A CYS 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 A SG CYS 87 A CYS 97 1_555 A SG CYS 129 A CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 A SG CYS 272 A CYS 281 1_555 A SG CYS 296 A CYS 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf6 B SG CYS 144 B CYS 144 1_555 B SG CYS 148 B CYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf7 C SG CYS 4 C CYS 14 1_555 D SG CYS 137 D CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf8 C SG CYS 42 C CYS 52 1_555 C SG CYS 268 C CYS 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf9 C SG CYS 54 C CYS 64 1_555 C SG CYS 66 C CYS 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf10 C SG CYS 87 C CYS 97 1_555 C SG CYS 129 C CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? disulf ? disulf11 C SG CYS 272 C CYS 281 1_555 C SG CYS 296 C CYS 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf12 D SG CYS 144 D CYS 144 1_555 D SG CYS 148 D CYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 A ND2 ASN 28 A ASN 38 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale2 A ND2 ASN 231 A ASN 240 1_555 F C1 NAG . A NAG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale3 B ND2 ASN 82 B ASN 82 1_555 G C1 NAG . B NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale4 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale5 E O4 NAG . E NAG 2 1_555 E C1 BMA . E BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms ? # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4N5J _atom_sites.fract_transf_matrix[1][1] 0.006472 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006472 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006472 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 4 NAG A 1 404 531 NAG NAG . G 4 NAG B 1 201 541 NAG NAG . H 5 HOH A 1 501 2 HOH HOH . H 5 HOH A 2 502 3 HOH HOH . H 5 HOH A 3 503 5 HOH HOH . H 5 HOH A 4 504 6 HOH HOH . H 5 HOH A 5 505 8 HOH HOH . H 5 HOH A 6 506 9 HOH HOH . H 5 HOH A 7 507 11 HOH HOH . H 5 HOH A 8 508 17 HOH HOH . H 5 HOH A 9 509 19 HOH HOH . H 5 HOH A 10 510 21 HOH HOH . H 5 HOH A 11 511 27 HOH HOH . H 5 HOH A 12 512 29 HOH HOH . H 5 HOH A 13 513 35 HOH HOH . H 5 HOH A 14 514 36 HOH HOH . H 5 HOH A 15 515 40 HOH HOH . H 5 HOH A 16 516 41 HOH HOH . H 5 HOH A 17 517 45 HOH HOH . H 5 HOH A 18 518 49 HOH HOH . H 5 HOH A 19 519 52 HOH HOH . H 5 HOH A 20 520 55 HOH HOH . H 5 HOH A 21 521 57 HOH HOH . H 5 HOH A 22 522 58 HOH HOH . H 5 HOH A 23 523 62 HOH HOH . H 5 HOH A 24 524 63 HOH HOH . H 5 HOH A 25 525 64 HOH HOH . H 5 HOH A 26 526 66 HOH HOH . H 5 HOH A 27 527 70 HOH HOH . H 5 HOH A 28 528 77 HOH HOH . H 5 HOH A 29 529 79 HOH HOH . H 5 HOH A 30 530 81 HOH HOH . I 5 HOH B 1 301 1 HOH HOH . I 5 HOH B 2 302 4 HOH HOH . I 5 HOH B 3 303 7 HOH HOH . I 5 HOH B 4 304 10 HOH HOH . I 5 HOH B 5 305 12 HOH HOH . I 5 HOH B 6 306 13 HOH HOH . I 5 HOH B 7 307 15 HOH HOH . I 5 HOH B 8 308 16 HOH HOH . I 5 HOH B 9 309 24 HOH HOH . I 5 HOH B 10 310 28 HOH HOH . I 5 HOH B 11 311 30 HOH HOH . I 5 HOH B 12 312 32 HOH HOH . I 5 HOH B 13 313 34 HOH HOH . I 5 HOH B 14 314 37 HOH HOH . I 5 HOH B 15 315 39 HOH HOH . I 5 HOH B 16 316 50 HOH HOH . I 5 HOH B 17 317 54 HOH HOH . I 5 HOH B 18 318 56 HOH HOH . I 5 HOH B 19 319 60 HOH HOH . I 5 HOH B 20 320 61 HOH HOH . I 5 HOH B 21 321 67 HOH HOH . I 5 HOH B 22 322 71 HOH HOH . I 5 HOH B 23 323 73 HOH HOH . I 5 HOH B 24 324 74 HOH HOH . I 5 HOH B 25 325 76 HOH HOH . I 5 HOH B 26 326 80 HOH HOH . J 5 HOH C 1 401 47 HOH HOH . J 5 HOH C 2 402 51 HOH HOH . K 5 HOH D 1 201 78 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . F 4 66.077 -42.858 -23.447 1 144.34 ? C1 NAG 404 A 1 HETATM 2 C C2 NAG . . . F 4 66.412 -44.305 -23.816 1 163.22 ? C2 NAG 404 A 1 HETATM 3 C C3 NAG . . . F 4 67.833 -44.4 -24.372 1 164.08 ? C3 NAG 404 A 1 HETATM 4 C C4 NAG . . . F 4 68.034 -43.395 -25.5 1 160.59 ? C4 NAG 404 A 1 HETATM 5 C C5 NAG . . . F 4 67.631 -41.999 -25.036 1 155.17 ? C5 NAG 404 A 1 HETATM 6 C C6 NAG . . . F 4 67.71 -40.962 -26.131 1 151.2 ? C6 NAG 404 A 1 HETATM 7 C C7 NAG . . . F 4 66.896 -45.097 -21.522 1 170.91 ? C7 NAG 404 A 1 HETATM 8 C C8 NAG . . . F 4 66.561 -46.126 -20.484 1 164.66 ? C8 NAG 404 A 1 HETATM 9 N N2 NAG . . . F 4 66.235 -45.203 -22.682 1 171.38 ? N2 NAG 404 A 1 HETATM 10 O O3 NAG . . . F 4 68.068 -45.72 -24.852 1 161.43 ? O3 NAG 404 A 1 HETATM 11 O O4 NAG . . . F 4 69.397 -43.382 -25.906 1 161.11 ? O4 NAG 404 A 1 HETATM 12 O O5 NAG . . . F 4 66.27 -42.019 -24.582 1 151.14 ? O5 NAG 404 A 1 HETATM 13 O O6 NAG . . . F 4 67.241 -39.697 -25.682 1 150.82 ? O6 NAG 404 A 1 HETATM 14 O O7 NAG . . . F 4 67.727 -44.215 -21.316 1 174.29 ? O7 NAG 404 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 14 #