data_4N5R
#
_model_server_result.job_id            20LrGQtvfTnlg-OAPPTq8g 
_model_server_result.datetime_utc      '2024-11-17 02:43:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4n5r 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":204}' 
#
_entry.id    4N5R 
#
_exptl.entry_id    4N5R 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              404.459 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '10-((2R)-2-HYDROXYPROPYL)-1,4,7,10-TETRAAZACYCLODODECANE 1,4,7-TRIACETIC ACID' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4N5R 
_cell.length_a            79.1 
_cell.length_b            79.1 
_cell.length_c            39.2 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4N5R 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? 
disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? 
disulf ? disulf4 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
metalc ? metalc1 B GD GD . A GD 201 1_555 E O3 DO3 . A DO3 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? 
metalc ? metalc2 B GD GD . A GD 201 1_555 E O7 DO3 . A DO3 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.684 ? 
metalc ? metalc3 B GD GD . A GD 201 1_555 E O1 DO3 . A DO3 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? 
metalc ? metalc4 B GD GD . A GD 201 1_555 E O5 DO3 . A DO3 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.542 ? 
metalc ? metalc5 B GD GD . A GD 201 1_555 E N2 DO3 . A DO3 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? 
metalc ? metalc6 B GD GD . A GD 201 1_555 E N3 DO3 . A DO3 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.543 ? 
metalc ? metalc7 B GD GD . A GD 201 1_555 E N1 DO3 . A DO3 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.704 ? 
metalc ? metalc8 B GD GD . A GD 201 1_555 E N4 DO3 . A DO3 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.706 ? 
metalc ? metalc9 C GD GD . A GD 202 1_555 D O7 DO3 . A DO3 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? 
metalc ? metalc10 C GD GD . A GD 202 1_555 D O5 DO3 . A DO3 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? 
metalc ? metalc11 C GD GD . A GD 202 1_555 D O1 DO3 . A DO3 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
metalc ? metalc12 C GD GD . A GD 202 1_555 D O3 DO3 . A DO3 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.462 ? 
metalc ? metalc13 C GD GD . A GD 202 1_555 D N4 DO3 . A DO3 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.724 ? 
metalc ? metalc14 C GD GD . A GD 202 1_555 D N2 DO3 . A DO3 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.704 ? 
metalc ? metalc15 C GD GD . A GD 202 1_555 D N3 DO3 . A DO3 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.783 ? 
metalc ? metalc16 C GD GD . A GD 202 1_555 D N1 DO3 . A DO3 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.814 ? 
#
_chem_comp.formula           'C17 H32 N4 O7' 
_chem_comp.formula_weight    404.459 
_chem_comp.id                DO3 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '10-((2R)-2-HYDROXYPROPYL)-1,4,7,10-TETRAAZACYCLODODECANE 1,4,7-TRIACETIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C1 DO3 sing 83 n n 
N1 C8 DO3 sing 84 n n 
N1 C10 DO3 sing 85 n n 
N2 C2 DO3 sing 86 n n 
N2 C3 DO3 sing 87 n n 
N2 C12 DO3 sing 88 n n 
N3 C4 DO3 sing 89 n n 
N3 C5 DO3 sing 90 n n 
N3 C14 DO3 sing 91 n n 
N4 C6 DO3 sing 92 n n 
N4 C7 DO3 sing 93 n n 
N4 C16 DO3 sing 94 n n 
O1 C9 DO3 sing 95 n n 
O1 HO1 DO3 sing 96 n n 
O3 C11 DO3 sing 97 n n 
O3 HO3 DO3 sing 98 n n 
O5 C13 DO3 sing 99 n n 
O5 HO5 DO3 sing 100 n n 
O7 C15 DO3 sing 101 n n 
O7 HO7 DO3 sing 102 n n 
C1 C2 DO3 sing 103 n n 
C1 HC11 DO3 sing 104 n n 
C1 HC12 DO3 sing 105 n n 
C2 HC21 DO3 sing 106 n n 
C2 HC22 DO3 sing 107 n n 
C3 C4 DO3 sing 108 n n 
C3 HC31 DO3 sing 109 n n 
C3 HC32 DO3 sing 110 n n 
C4 HC41 DO3 sing 111 n n 
C4 HC42 DO3 sing 112 n n 
C5 C6 DO3 sing 113 n n 
C5 HC51 DO3 sing 114 n n 
C5 HC52 DO3 sing 115 n n 
C6 HC61 DO3 sing 116 n n 
C6 HC62 DO3 sing 117 n n 
C7 C8 DO3 sing 118 n n 
C7 HC71 DO3 sing 119 n n 
C7 HC72 DO3 sing 120 n n 
C8 HC81 DO3 sing 121 n n 
C8 HC82 DO3 sing 122 n n 
C9 C10 DO3 sing 123 n n 
C9 O2 DO3 doub 124 n n 
C10 H101 DO3 sing 125 n n 
C10 H102 DO3 sing 126 n n 
C11 C12 DO3 sing 127 n n 
C11 O4 DO3 doub 128 n n 
C12 H121 DO3 sing 129 n n 
C12 H122 DO3 sing 130 n n 
C13 C14 DO3 sing 131 n n 
C13 O6 DO3 doub 132 n n 
C14 H141 DO3 sing 133 n n 
C14 H142 DO3 sing 134 n n 
C15 C16 DO3 sing 135 n n 
C15 C17 DO3 sing 136 n n 
C15 HA DO3 sing 137 n n 
C16 H161 DO3 sing 138 n n 
C16 H162 DO3 sing 139 n n 
C17 H171 DO3 sing 140 n n 
C17 H172 DO3 sing 141 n n 
C17 H173 DO3 sing 142 n n 
#
_atom_sites.entry_id                     4N5R 
_atom_sites.fract_transf_matrix[1][1]    0.012642 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012642 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.02551 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GD A 1 201 201 GD GD . 
C 2 GD A 1 202 202 GD GD . 
D 3 DO3 A 1 203 203 DO3 DO3 . 
E 3 DO3 A 1 204 204 DO3 DO3 . 
F 4 HOH A 1 301 301 HOH HOH . 
F 4 HOH A 2 302 302 HOH HOH . 
F 4 HOH A 3 303 303 HOH HOH . 
F 4 HOH A 4 304 304 HOH HOH . 
F 4 HOH A 5 305 305 HOH HOH . 
F 4 HOH A 6 306 306 HOH HOH . 
F 4 HOH A 7 307 307 HOH HOH . 
F 4 HOH A 8 308 308 HOH HOH . 
F 4 HOH A 9 309 309 HOH HOH . 
F 4 HOH A 10 310 310 HOH HOH . 
F 4 HOH A 11 311 311 HOH HOH . 
F 4 HOH A 12 312 312 HOH HOH . 
F 4 HOH A 13 313 313 HOH HOH . 
F 4 HOH A 14 314 314 HOH HOH . 
F 4 HOH A 15 315 315 HOH HOH . 
F 4 HOH A 16 316 316 HOH HOH . 
F 4 HOH A 17 317 318 HOH HOH . 
F 4 HOH A 18 318 320 HOH HOH . 
F 4 HOH A 19 319 322 HOH HOH . 
F 4 HOH A 20 320 323 HOH HOH . 
F 4 HOH A 21 321 324 HOH HOH . 
F 4 HOH A 22 322 325 HOH HOH . 
F 4 HOH A 23 323 326 HOH HOH . 
F 4 HOH A 24 324 327 HOH HOH . 
F 4 HOH A 25 325 328 HOH HOH . 
F 4 HOH A 26 326 330 HOH HOH . 
F 4 HOH A 27 327 331 HOH HOH . 
F 4 HOH A 28 328 332 HOH HOH . 
F 4 HOH A 29 329 334 HOH HOH . 
F 4 HOH A 30 330 335 HOH HOH . 
F 4 HOH A 31 331 337 HOH HOH . 
F 4 HOH A 32 332 338 HOH HOH . 
F 4 HOH A 33 333 339 HOH HOH . 
F 4 HOH A 34 334 340 HOH HOH . 
F 4 HOH A 35 335 341 HOH HOH . 
F 4 HOH A 36 336 342 HOH HOH . 
F 4 HOH A 37 337 345 HOH HOH . 
F 4 HOH A 38 338 346 HOH HOH . 
F 4 HOH A 39 339 347 HOH HOH . 
F 4 HOH A 40 340 348 HOH HOH . 
F 4 HOH A 41 341 349 HOH HOH . 
F 4 HOH A 42 342 350 HOH HOH . 
F 4 HOH A 43 343 351 HOH HOH . 
F 4 HOH A 44 344 354 HOH HOH . 
F 4 HOH A 45 345 355 HOH HOH . 
F 4 HOH A 46 346 357 HOH HOH . 
F 4 HOH A 47 347 364 HOH HOH . 
F 4 HOH A 48 348 365 HOH HOH . 
F 4 HOH A 49 349 368 HOH HOH . 
F 4 HOH A 50 350 369 HOH HOH . 
F 4 HOH A 51 351 370 HOH HOH . 
F 4 HOH A 52 352 1 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 DO3 . . . E 3 36.078 9.884 27.996 0.81 39.79 ? N1 DO3 204 A 1 
HETATM 2 N N2 DO3 . . . E 3 36.543 10.61 25.129 0.81 40.17 ? N2 DO3 204 A 1 
HETATM 3 N N3 DO3 . . . E 3 39.099 9.118 25.267 0.81 43.7 ? N3 DO3 204 A 1 
HETATM 4 N N4 DO3 . . . E 3 38.458 8.521 28.115 0.81 48.48 ? N4 DO3 204 A 1 
HETATM 5 O O1 DO3 . . . E 3 36.841 12.554 27.991 0.81 42.6 ? O1 DO3 204 A 1 
HETATM 6 O O3 DO3 . . . E 3 38.52 12.438 25.233 0.81 35.99 ? O3 DO3 204 A 1 
HETATM 7 O O5 DO3 . . . E 3 40.834 10.821 26.591 0.81 42.11 ? O5 DO3 204 A 1 
HETATM 8 O O7 DO3 . . . E 3 39.241 10.838 29.392 0.81 47.96 ? O7 DO3 204 A 1 
HETATM 9 C C1 DO3 . . . E 3 34.982 10.185 27.042 0.81 41.8 ? C1 DO3 204 A 1 
HETATM 10 C C2 DO3 . . . E 3 35.347 9.876 25.59 0.81 42.03 ? C2 DO3 204 A 1 
HETATM 11 C C3 DO3 . . . E 3 37.101 9.93 23.947 0.81 42.86 ? C3 DO3 204 A 1 
HETATM 12 C C4 DO3 . . . E 3 38.012 8.763 24.325 0.81 43.57 ? C4 DO3 204 A 1 
HETATM 13 C C5 DO3 . . . E 3 39.552 7.861 25.908 0.81 45.25 ? C5 DO3 204 A 1 
HETATM 14 C C6 DO3 . . . E 3 39.613 7.914 27.435 0.81 47.49 ? C6 DO3 204 A 1 
HETATM 15 C C7 DO3 . . . E 3 37.25 7.692 27.967 0.81 46.32 ? C7 DO3 204 A 1 
HETATM 16 C C8 DO3 . . . E 3 36.018 8.466 28.422 0.81 44.1 ? C8 DO3 204 A 1 
HETATM 17 C C9 DO3 . . . E 3 35.965 12.199 28.81 0.81 42.66 ? C9 DO3 204 A 1 
HETATM 18 C C10 DO3 . . . E 3 35.871 10.738 29.178 0.81 41.98 ? C10 DO3 204 A 1 
HETATM 19 C C11 DO3 . . . E 3 37.454 12.874 24.735 0.81 39.32 ? C11 DO3 204 A 1 
HETATM 20 C C12 DO3 . . . E 3 36.217 12 24.763 0.81 38.88 ? C12 DO3 204 A 1 
HETATM 21 C C13 DO3 . . . E 3 41.073 10.691 25.366 0.81 45.54 ? C13 DO3 204 A 1 
HETATM 22 C C14 DO3 . . . E 3 40.211 9.766 24.524 0.81 44.07 ? C14 DO3 204 A 1 
HETATM 23 C C15 DO3 . . . E 3 39.018 9.845 30.248 0.81 47.58 ? C15 DO3 204 A 1 
HETATM 24 C C16 DO3 . . . E 3 38.789 8.547 29.498 0.81 50.22 ? C16 DO3 204 A 1 
HETATM 25 C C17 DO3 . . . E 3 40.189 9.684 31.185 0.81 46.32 ? C17 DO3 204 A 1 
HETATM 26 O O2 DO3 . . . E 3 35.147 12.992 29.323 0.81 44.42 ? O2 DO3 204 A 1 
HETATM 27 O O4 DO3 . . . E 3 37.376 14.001 24.204 0.81 38.6 ? O4 DO3 204 A 1 
HETATM 28 O O6 DO3 . . . E 3 41.996 11.324 24.788 0.81 47.19 ? O6 DO3 204 A 1 
#
_model_server_stats.io_time_ms              64 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           286 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           28 
#