data_4N5X # _model_server_result.job_id zTRs-Ww35OVqaR2UT1_KlQ _model_server_result.datetime_utc '2024-11-29 17:17:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4n5x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 4N5X # _exptl.entry_id 4N5X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4N5X _cell.length_a 51.21 _cell.length_b 51.21 _cell.length_c 112.153 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4N5X _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 32 A ASP 32 1_555 B CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc2 A OD1 ASN 34 A ASN 34 1_555 B CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.621 ? metalc ? metalc3 A OD1 ASP 36 A ASP 36 1_555 B CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? metalc ? metalc4 A O VAL 38 A VAL 38 1_555 B CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc5 A OE1 GLU 43 A GLU 43 1_555 B CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.563 ? metalc ? metalc6 A OE2 GLU 43 A GLU 43 1_555 B CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.618 ? metalc ? metalc7 A O GLN 57 A GLN 57 1_555 C CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc8 A OE2 GLU 60 A GLU 60 1_555 C CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc9 A OE2 GLU 61 A GLU 61 1_555 C CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? metalc ? metalc10 A OE1 GLU 61 A GLU 61 1_555 C CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.737 ? metalc ? metalc11 A OD1 ASP 68 A ASP 68 1_555 D CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc12 A OD1 ASN 70 A ASN 70 1_555 D CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc13 A OD1 ASP 72 A ASP 72 1_555 D CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc14 A O LYS 74 A LYS 74 1_555 D CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc15 A OE1 GLU 79 A GLU 79 1_555 D CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.465 ? metalc ? metalc16 A OE2 GLU 79 A GLU 79 1_555 D CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.618 ? metalc ? metalc17 A OD1 ASP 99 A ASP 99 1_555 E CA CA . A CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc18 A OD1 ASN 101 A ASN 101 1_555 E CA CA . A CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? metalc ? metalc19 A OD1 ASP 103 A ASP 103 1_555 E CA CA . A CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.513 ? metalc ? metalc20 A O LYS 105 A LYS 105 1_555 E CA CA . A CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc21 A OE2 GLU 110 A GLU 110 1_555 E CA CA . A CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? metalc ? metalc22 A OE1 GLU 110 A GLU 110 1_555 E CA CA . A CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? metalc ? metalc23 A OD1 ASP 135 A ASP 135 1_555 F CA CA . A CA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? metalc ? metalc24 A OD1 ASP 137 A ASP 137 1_555 F CA CA . A CA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? metalc ? metalc25 A OG1 THR 139 A THR 139 1_555 F CA CA . A CA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? metalc ? metalc26 A O THR 141 A THR 141 1_555 F CA CA . A CA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? metalc ? metalc27 A OE1 GLU 146 A GLU 146 1_555 F CA CA . A CA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.494 ? metalc ? metalc28 A OE2 GLU 146 A GLU 146 1_555 F CA CA . A CA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.539 ? metalc ? metalc29 B CA CA . A CA 201 1_555 H O HOH . A HOH 356 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc30 C CA CA . A CA 202 1_555 H O HOH . A HOH 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? metalc ? metalc31 D CA CA . A CA 203 1_555 H O HOH . A HOH 324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? metalc ? metalc32 E CA CA . A CA 204 1_555 H O HOH . A HOH 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc33 F CA CA . A CA 205 1_555 H O HOH . A HOH 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4N5X _atom_sites.fract_transf_matrix[1][1] 0.019527 _atom_sites.fract_transf_matrix[1][2] 0.011274 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022548 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008916 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 201 1 CA CA . C 2 CA A 1 202 2 CA CA . D 2 CA A 1 203 3 CA CA . E 2 CA A 1 204 4 CA CA . F 2 CA A 1 205 5 CA CA . G 3 PEG A 1 206 402 PEG PEG . H 4 HOH A 1 301 1 HOH HOH . H 4 HOH A 2 302 2 HOH HOH . H 4 HOH A 3 303 3 HOH HOH . H 4 HOH A 4 304 4 HOH HOH . H 4 HOH A 5 305 5 HOH HOH . H 4 HOH A 6 306 6 HOH HOH . H 4 HOH A 7 307 7 HOH HOH . H 4 HOH A 8 308 8 HOH HOH . H 4 HOH A 9 309 9 HOH HOH . H 4 HOH A 10 310 10 HOH HOH . H 4 HOH A 11 311 11 HOH HOH . H 4 HOH A 12 312 12 HOH HOH . H 4 HOH A 13 313 13 HOH HOH . H 4 HOH A 14 314 14 HOH HOH . H 4 HOH A 15 315 15 HOH HOH . H 4 HOH A 16 316 16 HOH HOH . H 4 HOH A 17 317 17 HOH HOH . H 4 HOH A 18 318 18 HOH HOH . H 4 HOH A 19 319 19 HOH HOH . H 4 HOH A 20 320 20 HOH HOH . H 4 HOH A 21 321 21 HOH HOH . H 4 HOH A 22 322 22 HOH HOH . H 4 HOH A 23 323 23 HOH HOH . H 4 HOH A 24 324 24 HOH HOH . H 4 HOH A 25 325 25 HOH HOH . H 4 HOH A 26 326 26 HOH HOH . H 4 HOH A 27 327 27 HOH HOH . H 4 HOH A 28 328 28 HOH HOH . H 4 HOH A 29 329 29 HOH HOH . H 4 HOH A 30 330 30 HOH HOH . H 4 HOH A 31 331 31 HOH HOH . H 4 HOH A 32 332 33 HOH HOH . H 4 HOH A 33 333 34 HOH HOH . H 4 HOH A 34 334 35 HOH HOH . H 4 HOH A 35 335 36 HOH HOH . H 4 HOH A 36 336 37 HOH HOH . H 4 HOH A 37 337 38 HOH HOH . H 4 HOH A 38 338 39 HOH HOH . H 4 HOH A 39 339 40 HOH HOH . H 4 HOH A 40 340 41 HOH HOH . H 4 HOH A 41 341 42 HOH HOH . H 4 HOH A 42 342 43 HOH HOH . H 4 HOH A 43 343 44 HOH HOH . H 4 HOH A 44 344 45 HOH HOH . H 4 HOH A 45 345 46 HOH HOH . H 4 HOH A 46 346 47 HOH HOH . H 4 HOH A 47 347 48 HOH HOH . H 4 HOH A 48 348 49 HOH HOH . H 4 HOH A 49 349 50 HOH HOH . H 4 HOH A 50 350 51 HOH HOH . H 4 HOH A 51 351 52 HOH HOH . H 4 HOH A 52 352 53 HOH HOH . H 4 HOH A 53 353 54 HOH HOH . H 4 HOH A 54 354 55 HOH HOH . H 4 HOH A 55 355 57 HOH HOH . H 4 HOH A 56 356 58 HOH HOH . H 4 HOH A 57 357 59 HOH HOH . H 4 HOH A 58 358 60 HOH HOH . H 4 HOH A 59 359 61 HOH HOH . H 4 HOH A 60 360 62 HOH HOH . H 4 HOH A 61 361 63 HOH HOH . H 4 HOH A 62 362 64 HOH HOH . H 4 HOH A 63 363 65 HOH HOH . H 4 HOH A 64 364 66 HOH HOH . H 4 HOH A 65 365 67 HOH HOH . H 4 HOH A 66 366 68 HOH HOH . H 4 HOH A 67 367 69 HOH HOH . H 4 HOH A 68 368 70 HOH HOH . H 4 HOH A 69 369 71 HOH HOH . H 4 HOH A 70 370 72 HOH HOH . H 4 HOH A 71 371 73 HOH HOH . H 4 HOH A 72 372 74 HOH HOH . H 4 HOH A 73 373 75 HOH HOH . H 4 HOH A 74 374 76 HOH HOH . H 4 HOH A 75 375 77 HOH HOH . H 4 HOH A 76 376 78 HOH HOH . H 4 HOH A 77 377 79 HOH HOH . H 4 HOH A 78 378 80 HOH HOH . H 4 HOH A 79 379 82 HOH HOH . H 4 HOH A 80 380 83 HOH HOH . H 4 HOH A 81 381 84 HOH HOH . H 4 HOH A 82 382 85 HOH HOH . H 4 HOH A 83 383 86 HOH HOH . H 4 HOH A 84 384 87 HOH HOH . H 4 HOH A 85 385 88 HOH HOH . H 4 HOH A 86 386 89 HOH HOH . H 4 HOH A 87 387 90 HOH HOH . H 4 HOH A 88 388 91 HOH HOH . H 4 HOH A 89 389 92 HOH HOH . H 4 HOH A 90 390 93 HOH HOH . H 4 HOH A 91 391 94 HOH HOH . H 4 HOH A 92 392 95 HOH HOH . H 4 HOH A 93 393 96 HOH HOH . H 4 HOH A 94 394 97 HOH HOH . H 4 HOH A 95 395 98 HOH HOH . H 4 HOH A 96 396 99 HOH HOH . H 4 HOH A 97 397 100 HOH HOH . H 4 HOH A 98 398 101 HOH HOH . H 4 HOH A 99 399 102 HOH HOH . H 4 HOH A 100 400 103 HOH HOH . H 4 HOH A 101 401 104 HOH HOH . H 4 HOH A 102 402 105 HOH HOH . H 4 HOH A 103 403 106 HOH HOH . H 4 HOH A 104 404 107 HOH HOH . H 4 HOH A 105 405 108 HOH HOH . H 4 HOH A 106 406 109 HOH HOH . H 4 HOH A 107 407 110 HOH HOH . H 4 HOH A 108 408 111 HOH HOH . H 4 HOH A 109 409 112 HOH HOH . H 4 HOH A 110 410 113 HOH HOH . H 4 HOH A 111 411 114 HOH HOH . H 4 HOH A 112 412 115 HOH HOH . H 4 HOH A 113 413 116 HOH HOH . H 4 HOH A 114 414 117 HOH HOH . H 4 HOH A 115 415 118 HOH HOH . H 4 HOH A 116 416 119 HOH HOH . H 4 HOH A 117 417 120 HOH HOH . H 4 HOH A 118 418 121 HOH HOH . H 4 HOH A 119 419 122 HOH HOH . H 4 HOH A 120 420 123 HOH HOH . H 4 HOH A 121 421 124 HOH HOH . H 4 HOH A 122 422 125 HOH HOH . H 4 HOH A 123 423 126 HOH HOH . H 4 HOH A 124 424 127 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 61.473 _atom_site.Cartn_y 19.098 _atom_site.Cartn_z 46.247 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 19.52 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 203 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 382 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #