data_4N6F # _model_server_result.job_id IGru1wYVMKXC2a1xnTUVLw _model_server_result.datetime_utc '2024-11-05 10:26:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4n6f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":302}' # _entry.id 4N6F # _exptl.entry_id 4N6F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4N6F _cell.length_a 168.94 _cell.length_b 168.94 _cell.length_c 42.367 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4N6F _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 G N N ? 2 H N N ? 2 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 110 A LYS 110 1_555 F C1 F6R . A F6R 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.488 ? covale ? covale2 B NZ LYS 110 B LYS 110 1_555 J C1 F6R . B F6R 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.484 ? metalc ? metalc1 A OD2 ASP 56 A ASP 56 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.58 ? metalc ? metalc2 A OD1 ASP 56 A ASP 56 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.606 ? metalc ? metalc3 A OD1 ASP 58 A ASP 58 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc4 A OD1 ASP 68 A ASP 68 1_555 D CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc5 A O ASP 68 A ASP 68 1_555 D CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.539 ? metalc ? metalc6 A OD1 ASP 71 A ASP 71 1_555 D CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.522 ? metalc ? metalc7 A OE2 GLU 72 A GLU 72 1_555 D CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc8 A O GLY 188 A GLY 188 1_555 E CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.687 ? metalc ? metalc9 C CA CA . A CA 301 1_555 K O HOH . A HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.48 ? metalc ? metalc10 C CA CA . A CA 301 1_555 K O HOH . A HOH 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? metalc ? metalc11 D CA CA . A CA 302 1_555 K O HOH . A HOH 423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc12 D CA CA . A CA 302 1_555 K O HOH . A HOH 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.816 ? metalc ? metalc13 D CA CA . A CA 302 1_555 K O HOH . A HOH 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.674 ? metalc ? metalc14 E CA CA . A CA 303 1_555 K O HOH . A HOH 437 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.568 ? metalc ? metalc15 E CA CA . A CA 303 1_555 K O HOH . A HOH 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.93 ? metalc ? metalc16 E CA CA . A CA 303 1_555 K O HOH . A HOH 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc17 B O GLN 32 B GLN 32 1_555 G CA CA . B CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? metalc ? metalc18 B OD2 ASP 34 B ASP 34 1_555 G CA CA . B CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.54 ? metalc ? metalc19 B OD1 ASP 34 B ASP 34 1_555 I CA CA . B CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc20 B OD2 ASP 34 B ASP 34 1_555 I CA CA . B CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.788 ? metalc ? metalc21 B O ILE 184 B ILE 184 1_555 H CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? metalc ? metalc22 B O ILE 187 B ILE 187 1_555 H CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? metalc ? metalc23 H CA CA . B CA 302 1_555 L O HOH . B HOH 421 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? metalc ? metalc24 H CA CA . B CA 302 1_555 L O HOH . B HOH 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc25 H CA CA . B CA 302 1_555 L O HOH . B HOH 423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? metalc ? metalc26 H CA CA . B CA 302 1_555 L O HOH . B HOH 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.507 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4N6F _atom_sites.fract_transf_matrix[1][1] 0.005919 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005919 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023603 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CA A 1 301 300 CA CA . D 2 CA A 1 302 301 CA CA . E 2 CA A 1 303 302 CA CA . F 3 F6R A 1 304 110 F6R KKG . G 2 CA B 1 301 300 CA CA . H 2 CA B 1 302 301 CA CA . I 2 CA B 1 303 302 CA CA . J 3 F6R B 1 304 110 F6R KKG . K 4 HOH A 1 401 303 HOH HOH . K 4 HOH A 2 402 304 HOH HOH . K 4 HOH A 3 403 305 HOH HOH . K 4 HOH A 4 404 306 HOH HOH . K 4 HOH A 5 405 307 HOH HOH . K 4 HOH A 6 406 308 HOH HOH . K 4 HOH A 7 407 309 HOH HOH . K 4 HOH A 8 408 310 HOH HOH . K 4 HOH A 9 409 311 HOH HOH . K 4 HOH A 10 410 312 HOH HOH . K 4 HOH A 11 411 313 HOH HOH . K 4 HOH A 12 412 314 HOH HOH . K 4 HOH A 13 413 315 HOH HOH . K 4 HOH A 14 414 316 HOH HOH . K 4 HOH A 15 415 317 HOH HOH . K 4 HOH A 16 416 318 HOH HOH . K 4 HOH A 17 417 319 HOH HOH . K 4 HOH A 18 418 320 HOH HOH . K 4 HOH A 19 419 321 HOH HOH . K 4 HOH A 20 420 322 HOH HOH . K 4 HOH A 21 421 323 HOH HOH . K 4 HOH A 22 422 324 HOH HOH . K 4 HOH A 23 423 325 HOH HOH . K 4 HOH A 24 424 326 HOH HOH . K 4 HOH A 25 425 327 HOH HOH . K 4 HOH A 26 426 328 HOH HOH . K 4 HOH A 27 427 329 HOH HOH . K 4 HOH A 28 428 330 HOH HOH . K 4 HOH A 29 429 331 HOH HOH . K 4 HOH A 30 430 332 HOH HOH . K 4 HOH A 31 431 333 HOH HOH . K 4 HOH A 32 432 334 HOH HOH . K 4 HOH A 33 433 335 HOH HOH . K 4 HOH A 34 434 336 HOH HOH . K 4 HOH A 35 435 337 HOH HOH . K 4 HOH A 36 436 338 HOH HOH . K 4 HOH A 37 437 339 HOH HOH . K 4 HOH A 38 438 340 HOH HOH . K 4 HOH A 39 439 341 HOH HOH . K 4 HOH A 40 440 342 HOH HOH . K 4 HOH A 41 441 343 HOH HOH . K 4 HOH A 42 442 344 HOH HOH . K 4 HOH A 43 443 345 HOH HOH . K 4 HOH A 44 444 346 HOH HOH . K 4 HOH A 45 445 347 HOH HOH . K 4 HOH A 46 446 348 HOH HOH . K 4 HOH A 47 447 349 HOH HOH . K 4 HOH A 48 448 350 HOH HOH . K 4 HOH A 49 449 351 HOH HOH . K 4 HOH A 50 450 352 HOH HOH . K 4 HOH A 51 451 353 HOH HOH . K 4 HOH A 52 452 354 HOH HOH . K 4 HOH A 53 453 355 HOH HOH . K 4 HOH A 54 454 356 HOH HOH . K 4 HOH A 55 455 357 HOH HOH . K 4 HOH A 56 456 358 HOH HOH . K 4 HOH A 57 457 359 HOH HOH . K 4 HOH A 58 458 360 HOH HOH . K 4 HOH A 59 459 361 HOH HOH . K 4 HOH A 60 460 362 HOH HOH . K 4 HOH A 61 461 363 HOH HOH . K 4 HOH A 62 462 364 HOH HOH . K 4 HOH A 63 463 365 HOH HOH . K 4 HOH A 64 464 366 HOH HOH . K 4 HOH A 65 465 367 HOH HOH . K 4 HOH A 66 466 368 HOH HOH . K 4 HOH A 67 467 369 HOH HOH . L 4 HOH B 1 401 303 HOH HOH . L 4 HOH B 2 402 304 HOH HOH . L 4 HOH B 3 403 305 HOH HOH . L 4 HOH B 4 404 306 HOH HOH . L 4 HOH B 5 405 307 HOH HOH . L 4 HOH B 6 406 308 HOH HOH . L 4 HOH B 7 407 309 HOH HOH . L 4 HOH B 8 408 310 HOH HOH . L 4 HOH B 9 409 311 HOH HOH . L 4 HOH B 10 410 312 HOH HOH . L 4 HOH B 11 411 313 HOH HOH . L 4 HOH B 12 412 314 HOH HOH . L 4 HOH B 13 413 315 HOH HOH . L 4 HOH B 14 414 316 HOH HOH . L 4 HOH B 15 415 317 HOH HOH . L 4 HOH B 16 416 318 HOH HOH . L 4 HOH B 17 417 319 HOH HOH . L 4 HOH B 18 418 320 HOH HOH . L 4 HOH B 19 419 321 HOH HOH . L 4 HOH B 20 420 322 HOH HOH . L 4 HOH B 21 421 323 HOH HOH . L 4 HOH B 22 422 324 HOH HOH . L 4 HOH B 23 423 325 HOH HOH . L 4 HOH B 24 424 326 HOH HOH . L 4 HOH B 25 425 327 HOH HOH . L 4 HOH B 26 426 328 HOH HOH . L 4 HOH B 27 427 329 HOH HOH . L 4 HOH B 28 428 330 HOH HOH . L 4 HOH B 29 429 331 HOH HOH . L 4 HOH B 30 430 332 HOH HOH . L 4 HOH B 31 431 333 HOH HOH . L 4 HOH B 32 432 334 HOH HOH . L 4 HOH B 33 433 335 HOH HOH . L 4 HOH B 34 434 336 HOH HOH . L 4 HOH B 35 435 337 HOH HOH . L 4 HOH B 36 436 338 HOH HOH . L 4 HOH B 37 437 339 HOH HOH . L 4 HOH B 38 438 340 HOH HOH . L 4 HOH B 39 439 341 HOH HOH . L 4 HOH B 40 440 342 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 2 _atom_site.Cartn_x -74.311 _atom_site.Cartn_y -27.803 _atom_site.Cartn_z -16.944 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 46.78 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 302 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #