data_4N6H # _model_server_result.job_id hZ6WBCGzwgH6fGfNQaBsUw _model_server_result.datetime_utc '2024-11-22 23:02:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4n6h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1207}' # _entry.id 4N6H # _exptl.entry_id 4N6H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.48 _cell.angle_gamma 90 _cell.entry_id 4N6H _cell.length_a 86.23 _cell.length_b 72.851 _cell.length_c 84.408 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4N6H _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 H N N ? 3 I N N ? 3 M N N ? 3 W N N ? 3 X N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 197 A CYS 121 1_555 A SG CYS 274 A CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc1 A OD1 ASP 171 A ASP 95 1_555 U NA NA . A NA 1220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? metalc ? metalc2 A OD1 ASN 207 A ASN 131 1_555 U NA NA . A NA 1220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? metalc ? metalc3 A OG SER 211 A SER 135 1_555 U NA NA . A NA 1220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc4 U NA NA . A NA 1220 1_555 Y O HOH . A HOH 1307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc5 U NA NA . A NA 1220 1_555 Y O HOH . A HOH 1308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.512 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 354 n n C10 C9 OLC doub 355 n n C10 C11 OLC sing 356 n n C9 C8 OLC sing 357 n n C17 C16 OLC sing 358 z n C11 C12 OLC sing 359 n n C8 C7 OLC sing 360 n n C24 C22 OLC sing 361 n n C24 O25 OLC sing 362 n n C16 C15 OLC sing 363 n n C12 C13 OLC sing 364 n n C7 C6 OLC sing 365 n n C15 C14 OLC sing 366 n n C13 C14 OLC sing 367 n n C6 C5 OLC sing 368 n n C5 C4 OLC sing 369 n n C4 C3 OLC sing 370 n n C3 C2 OLC sing 371 n n C2 C1 OLC sing 372 n n C21 C22 OLC sing 373 n n C21 O20 OLC sing 374 n n C1 O19 OLC doub 375 n n C1 O20 OLC sing 376 n n C22 O23 OLC sing 377 n n C18 H18 OLC sing 378 n n C18 H18A OLC sing 379 n n C18 H18B OLC sing 380 n n C10 H10 OLC sing 381 n n C9 H9 OLC sing 382 n n C17 H17 OLC sing 383 n n C17 H17A OLC sing 384 n n C11 H11 OLC sing 385 n n C11 H11A OLC sing 386 n n C8 H8 OLC sing 387 n n C8 H8A OLC sing 388 n n C24 H24 OLC sing 389 n n C24 H24A OLC sing 390 n n C16 H16 OLC sing 391 n n C16 H16A OLC sing 392 n n C12 H12 OLC sing 393 n n C12 H12A OLC sing 394 n n C7 H7 OLC sing 395 n n C7 H7A OLC sing 396 n n C15 H15 OLC sing 397 n n C15 H15A OLC sing 398 n n C13 H13 OLC sing 399 n n C13 H13A OLC sing 400 n n C6 H6 OLC sing 401 n n C6 H6A OLC sing 402 n n C14 H14 OLC sing 403 n n C14 H14A OLC sing 404 n n C5 H5 OLC sing 405 n n C5 H5A OLC sing 406 n n C4 H4 OLC sing 407 n n C4 H4A OLC sing 408 n n C3 H3 OLC sing 409 n n C3 H3A OLC sing 410 n n C2 H2 OLC sing 411 n n C2 H2A OLC sing 412 n n C21 H21 OLC sing 413 n n C21 H21A OLC sing 414 n n C22 H22 OLC sing 415 n n O25 HO25 OLC sing 416 n n O23 HO23 OLC sing 417 n n # _atom_sites.entry_id 4N6H _atom_sites.fract_transf_matrix[1][1] 0.011597 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003651 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013727 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01242 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 OLA A 1 1201 3 OLA OLA . C 2 OLA A 1 1202 4 OLA OLA . D 2 OLA A 1 1203 6 OLA OLA . E 2 OLA A 1 1204 7 OLA OLA . F 2 OLA A 1 1205 9 OLA OLA . G 2 OLA A 1 1206 12 OLA OLA . H 3 OLC A 1 1207 13 OLC OLC . I 3 OLC A 1 1208 14 OLC OLC . J 2 OLA A 1 1209 15 OLA OLA . K 2 OLA A 1 1210 16 OLA OLA . L 2 OLA A 1 1211 17 OLA OLA . M 3 OLC A 1 1212 19 OLC OLC . N 4 PGE A 1 1213 21 PGE PGE . O 4 PGE A 1 1214 22 PGE PGE . P 2 OLA A 1 1215 1 OLA OLA . Q 2 OLA A 1 1216 2 OLA OLA . R 2 OLA A 1 1217 3 OLA OLA . S 5 TLA A 1 1218 1 TLA TLA . T 6 EJ4 A 1 1219 500 EJ4 EJ4 . U 7 NA A 1 1220 1 NA NA . V 4 PGE A 1 1221 2 PGE PGE . W 3 OLC A 1 1222 1 OLC OLC . X 3 OLC A 1 1223 2 OLC OLC . Y 8 HOH A 1 1301 101 HOH HOH . Y 8 HOH A 2 1302 102 HOH HOH . Y 8 HOH A 3 1303 103 HOH HOH . Y 8 HOH A 4 1304 104 HOH HOH . Y 8 HOH A 5 1305 105 HOH HOH . Y 8 HOH A 6 1306 106 HOH HOH . Y 8 HOH A 7 1307 107 HOH HOH . Y 8 HOH A 8 1308 108 HOH HOH . Y 8 HOH A 9 1309 109 HOH HOH . Y 8 HOH A 10 1310 110 HOH HOH . Y 8 HOH A 11 1311 115 HOH HOH . Y 8 HOH A 12 1312 116 HOH HOH . Y 8 HOH A 13 1313 117 HOH HOH . Y 8 HOH A 14 1314 118 HOH HOH . Y 8 HOH A 15 1315 119 HOH HOH . Y 8 HOH A 16 1316 120 HOH HOH . Y 8 HOH A 17 1317 121 HOH HOH . Y 8 HOH A 18 1318 122 HOH HOH . Y 8 HOH A 19 1319 123 HOH HOH . Y 8 HOH A 20 1320 124 HOH HOH . Y 8 HOH A 21 1321 125 HOH HOH . Y 8 HOH A 22 1322 201 HOH HOH . Y 8 HOH A 23 1323 202 HOH HOH . Y 8 HOH A 24 1324 203 HOH HOH . Y 8 HOH A 25 1325 204 HOH HOH . Y 8 HOH A 26 1326 205 HOH HOH . Y 8 HOH A 27 1327 206 HOH HOH . Y 8 HOH A 28 1328 209 HOH HOH . Y 8 HOH A 29 1329 210 HOH HOH . Y 8 HOH A 30 1330 214 HOH HOH . Y 8 HOH A 31 1331 215 HOH HOH . Y 8 HOH A 32 1332 216 HOH HOH . Y 8 HOH A 33 1333 217 HOH HOH . Y 8 HOH A 34 1334 218 HOH HOH . Y 8 HOH A 35 1335 219 HOH HOH . Y 8 HOH A 36 1336 220 HOH HOH . Y 8 HOH A 37 1337 227 HOH HOH . Y 8 HOH A 38 1338 231 HOH HOH . Y 8 HOH A 39 1339 232 HOH HOH . Y 8 HOH A 40 1340 236 HOH HOH . Y 8 HOH A 41 1341 239 HOH HOH . Y 8 HOH A 42 1342 240 HOH HOH . Y 8 HOH A 43 1343 241 HOH HOH . Y 8 HOH A 44 1344 243 HOH HOH . Y 8 HOH A 45 1345 244 HOH HOH . Y 8 HOH A 46 1346 245 HOH HOH . Y 8 HOH A 47 1347 246 HOH HOH . Y 8 HOH A 48 1348 249 HOH HOH . Y 8 HOH A 49 1349 250 HOH HOH . Y 8 HOH A 50 1350 251 HOH HOH . Y 8 HOH A 51 1351 252 HOH HOH . Y 8 HOH A 52 1352 255 HOH HOH . Y 8 HOH A 53 1353 256 HOH HOH . Y 8 HOH A 54 1354 257 HOH HOH . Y 8 HOH A 55 1355 258 HOH HOH . Y 8 HOH A 56 1356 259 HOH HOH . Y 8 HOH A 57 1357 261 HOH HOH . Y 8 HOH A 58 1358 263 HOH HOH . Y 8 HOH A 59 1359 264 HOH HOH . Y 8 HOH A 60 1360 265 HOH HOH . Y 8 HOH A 61 1361 266 HOH HOH . Y 8 HOH A 62 1362 267 HOH HOH . Y 8 HOH A 63 1363 270 HOH HOH . Y 8 HOH A 64 1364 271 HOH HOH . Y 8 HOH A 65 1365 272 HOH HOH . Y 8 HOH A 66 1366 273 HOH HOH . Y 8 HOH A 67 1367 274 HOH HOH . Y 8 HOH A 68 1368 277 HOH HOH . Y 8 HOH A 69 1369 278 HOH HOH . Y 8 HOH A 70 1370 283 HOH HOH . Y 8 HOH A 71 1371 284 HOH HOH . Y 8 HOH A 72 1372 286 HOH HOH . Y 8 HOH A 73 1373 287 HOH HOH . Y 8 HOH A 74 1374 288 HOH HOH . Y 8 HOH A 75 1375 289 HOH HOH . Y 8 HOH A 76 1376 291 HOH HOH . Y 8 HOH A 77 1377 293 HOH HOH . Y 8 HOH A 78 1378 294 HOH HOH . Y 8 HOH A 79 1379 298 HOH HOH . Y 8 HOH A 80 1380 299 HOH HOH . Y 8 HOH A 81 1381 300 HOH HOH . Y 8 HOH A 82 1382 303 HOH HOH . Y 8 HOH A 83 1383 304 HOH HOH . Y 8 HOH A 84 1384 305 HOH HOH . Y 8 HOH A 85 1385 306 HOH HOH . Y 8 HOH A 86 1386 307 HOH HOH . Y 8 HOH A 87 1387 308 HOH HOH . Y 8 HOH A 88 1388 311 HOH HOH . Y 8 HOH A 89 1389 312 HOH HOH . Y 8 HOH A 90 1390 371 HOH HOH . Y 8 HOH A 91 1391 373 HOH HOH . Y 8 HOH A 92 1392 374 HOH HOH . Y 8 HOH A 93 1393 375 HOH HOH . Y 8 HOH A 94 1394 376 HOH HOH . Y 8 HOH A 95 1395 380 HOH HOH . Y 8 HOH A 96 1396 381 HOH HOH . Y 8 HOH A 97 1397 382 HOH HOH . Y 8 HOH A 98 1398 383 HOH HOH . Y 8 HOH A 99 1399 384 HOH HOH . Y 8 HOH A 100 1400 386 HOH HOH . Y 8 HOH A 101 1401 5 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C24 OLC . . . H 3 -15.077 -58.243 90.53 1 64.81 ? C24 OLC 1207 A 1 HETATM 2 C C6 OLC . . . H 3 -8.729 -57.202 83.661 1 55.46 ? C6 OLC 1207 A 1 HETATM 3 C C5 OLC . . . H 3 -8.988 -58.418 84.55 1 58.28 ? C5 OLC 1207 A 1 HETATM 4 C C4 OLC . . . H 3 -9.851 -58.071 85.756 1 51.62 ? C4 OLC 1207 A 1 HETATM 5 C C3 OLC . . . H 3 -10.569 -59.247 86.42 1 50.65 ? C3 OLC 1207 A 1 HETATM 6 C C2 OLC . . . H 3 -12.023 -58.86 86.65 1 57.26 ? C2 OLC 1207 A 1 HETATM 7 C C21 OLC . . . H 3 -14.781 -60.206 88.965 1 61.11 ? C21 OLC 1207 A 1 HETATM 8 C C1 OLC . . . H 3 -12.785 -59.878 87.454 1 55.6 ? C1 OLC 1207 A 1 HETATM 9 C C22 OLC . . . H 3 -15.774 -59.26 89.638 1 66.24 ? C22 OLC 1207 A 1 HETATM 10 O O19 OLC . . . H 3 -12.219 -60.88 87.821 1 68.9 ? O19 OLC 1207 A 1 HETATM 11 O O25 OLC . . . H 3 -16.076 -57.55 91.276 1 65.88 ? O25 OLC 1207 A 1 HETATM 12 O O23 OLC . . . H 3 -16.548 -58.586 88.639 1 74.38 ? O23 OLC 1207 A 1 HETATM 13 O O20 OLC . . . H 3 -14.189 -59.655 87.792 1 61.98 ? O20 OLC 1207 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 13 #