data_4N6S # _model_server_result.job_id et2FqqOK4oNhGu0sN7Pzrw _model_server_result.datetime_utc '2024-11-04 23:23:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4n6s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":201}' # _entry.id 4N6S # _exptl.entry_id 4N6S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 588.694 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PHYCOCYANOBILIN _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4N6S _cell.length_a 188.07 _cell.length_b 188.07 _cell.length_c 60.38 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4N6S _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dodecameric 12 software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G 1 1,2,3,4,5,6 A,B,C,D,E,F,G 2 1,6 A,B,C,D,E,F,G 3 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 5 'crystal symmetry operation' 5_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 6 'crystal symmetry operation' 6_555 -x,-x+y,-z -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 84 A CYS 84 1_555 C CAC CYC . A CYC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.814 ? covale ? covale2 B C GLY 71 B GLY 71 1_555 B N MEN 72 B MEN 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale3 B C MEN 72 B MEN 72 1_555 B N ALA 73 B ALA 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.521 ? covale ? covale4 B SG CYS 82 B CYS 84 1_555 D CAC CYC . B CYC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.842 ? covale ? covale5 B SG CYS 153 B CYS 155 1_555 E CAC CYC . B CYC 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.822 ? # _chem_comp.formula 'C33 H40 N4 O6' _chem_comp.formula_weight 588.694 _chem_comp.id CYC _chem_comp.mon_nstd_flag . _chem_comp.name PHYCOCYANOBILIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A CYC doub 70 z n CHA C4D CYC sing 71 n n CHA HHA CYC sing 72 n n NA C1A CYC sing 73 n n NA C4A CYC doub 74 n n C1A C2A CYC sing 75 n n C2A C3A CYC doub 76 n n C2A CAA CYC sing 77 n n C3A C4A CYC sing 78 n n C3A CMA CYC sing 79 n n C4A CHB CYC sing 80 n n CMA HMA1 CYC sing 81 n n CMA HMA2 CYC sing 82 n n CMA HMA3 CYC sing 83 n n CAA CBA CYC sing 84 n n CAA HAA1 CYC sing 85 n n CAA HAA2 CYC sing 86 n n CBA CGA CYC sing 87 n n CBA HBA1 CYC sing 88 n n CBA HBA2 CYC sing 89 n n CGA O1A CYC doub 90 n n CGA O2A CYC sing 91 n n O2A H2A CYC sing 92 n n CHB C1B CYC doub 93 z n CHB HHB CYC sing 94 n n NB C1B CYC sing 95 n n NB C4B CYC sing 96 n n NB HB CYC sing 97 n n C1B C2B CYC sing 98 n n C2B C3B CYC doub 99 n n C2B CMB CYC sing 100 n n C3B C4B CYC sing 101 n n C3B CAB CYC sing 102 n n C4B OB CYC doub 103 n n CMB HMB1 CYC sing 104 n n CMB HMB2 CYC sing 105 n n CMB HMB3 CYC sing 106 n n CAB CBB CYC sing 107 n n CAB HAB1 CYC sing 108 n n CAB HAB2 CYC sing 109 n n CBB HBB1 CYC sing 110 n n CBB HBB2 CYC sing 111 n n CBB HBB3 CYC sing 112 n n NC C1C CYC sing 113 n n NC C4C CYC sing 114 n n NC HC CYC sing 115 n n C1C C2C CYC sing 116 n n C1C OC CYC doub 117 n n C2C C3C CYC sing 118 n n C2C CMC CYC sing 119 n n C2C H2C CYC sing 120 n n C3C C4C CYC sing 121 n n C3C CAC CYC sing 122 n n C3C H3C CYC sing 123 n n C4C CHD CYC doub 124 z n CMC HMC1 CYC sing 125 n n CMC HMC2 CYC sing 126 n n CMC HMC3 CYC sing 127 n n CAC CBC CYC sing 128 n n CAC HAC1 CYC sing 129 n n CAC HAC2 CYC sing 130 n n CBC HBC1 CYC sing 131 n n CBC HBC2 CYC sing 132 n n CBC HBC3 CYC sing 133 n n CHD C1D CYC sing 134 n n CHD HHD CYC sing 135 n n ND C1D CYC sing 136 n y ND C4D CYC sing 137 n y ND HD CYC sing 138 n n C1D C2D CYC doub 139 n y C2D C3D CYC sing 140 n y C2D CMD CYC sing 141 n n C3D C4D CYC doub 142 n y C3D CAD CYC sing 143 n n CMD HMD1 CYC sing 144 n n CMD HMD2 CYC sing 145 n n CMD HMD3 CYC sing 146 n n CAD CBD CYC sing 147 n n CAD HAD1 CYC sing 148 n n CAD HAD2 CYC sing 149 n n CBD CGD CYC sing 150 n n CBD HBD1 CYC sing 151 n n CBD HBD2 CYC sing 152 n n CGD O1D CYC doub 153 n n CGD O2D CYC sing 154 n n O2D H2D CYC sing 155 n n # _atom_sites.entry_id 4N6S _atom_sites.fract_transf_matrix[1][1] 0.005317 _atom_sites.fract_transf_matrix[1][2] 0.00307 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00614 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016562 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CYC A 1 201 484 CYC CYC . D 3 CYC B 1 201 584 CYC CYC . E 3 CYC B 1 202 555 CYC CYC . F 4 HOH A 1 301 1 HOH WAT . F 4 HOH A 2 302 2 HOH WAT . F 4 HOH A 3 303 3 HOH WAT . F 4 HOH A 4 304 4 HOH WAT . F 4 HOH A 5 305 7 HOH WAT . F 4 HOH A 6 306 8 HOH WAT . F 4 HOH A 7 307 9 HOH WAT . F 4 HOH A 8 308 11 HOH WAT . F 4 HOH A 9 309 13 HOH WAT . F 4 HOH A 10 310 15 HOH WAT . F 4 HOH A 11 311 19 HOH WAT . F 4 HOH A 12 312 20 HOH WAT . F 4 HOH A 13 313 22 HOH WAT . F 4 HOH A 14 314 23 HOH WAT . F 4 HOH A 15 315 25 HOH WAT . F 4 HOH A 16 316 26 HOH WAT . F 4 HOH A 17 317 27 HOH WAT . F 4 HOH A 18 318 29 HOH WAT . F 4 HOH A 19 319 31 HOH WAT . F 4 HOH A 20 320 32 HOH WAT . F 4 HOH A 21 321 33 HOH WAT . F 4 HOH A 22 322 35 HOH WAT . F 4 HOH A 23 323 36 HOH WAT . F 4 HOH A 24 324 37 HOH WAT . F 4 HOH A 25 325 40 HOH WAT . F 4 HOH A 26 326 42 HOH WAT . F 4 HOH A 27 327 43 HOH WAT . F 4 HOH A 28 328 44 HOH WAT . F 4 HOH A 29 329 45 HOH WAT . F 4 HOH A 30 330 46 HOH WAT . F 4 HOH A 31 331 47 HOH WAT . F 4 HOH A 32 332 49 HOH WAT . F 4 HOH A 33 333 50 HOH WAT . F 4 HOH A 34 334 53 HOH WAT . F 4 HOH A 35 335 54 HOH WAT . F 4 HOH A 36 336 55 HOH WAT . F 4 HOH A 37 337 56 HOH WAT . F 4 HOH A 38 338 57 HOH WAT . F 4 HOH A 39 339 62 HOH WAT . F 4 HOH A 40 340 63 HOH WAT . F 4 HOH A 41 341 67 HOH WAT . F 4 HOH A 42 342 70 HOH WAT . F 4 HOH A 43 343 73 HOH WAT . F 4 HOH A 44 344 74 HOH WAT . F 4 HOH A 45 345 76 HOH WAT . F 4 HOH A 46 346 77 HOH WAT . F 4 HOH A 47 347 81 HOH WAT . F 4 HOH A 48 348 82 HOH WAT . F 4 HOH A 49 349 83 HOH WAT . F 4 HOH A 50 350 84 HOH WAT . F 4 HOH A 51 351 89 HOH WAT . F 4 HOH A 52 352 92 HOH WAT . F 4 HOH A 53 353 93 HOH WAT . F 4 HOH A 54 354 95 HOH WAT . F 4 HOH A 55 355 96 HOH WAT . F 4 HOH A 56 356 98 HOH WAT . F 4 HOH A 57 357 99 HOH WAT . F 4 HOH A 58 358 101 HOH WAT . F 4 HOH A 59 359 105 HOH WAT . F 4 HOH A 60 360 107 HOH WAT . F 4 HOH A 61 361 108 HOH WAT . F 4 HOH A 62 362 109 HOH WAT . G 4 HOH B 1 301 5 HOH WAT . G 4 HOH B 2 302 6 HOH WAT . G 4 HOH B 3 303 10 HOH WAT . G 4 HOH B 4 304 12 HOH WAT . G 4 HOH B 5 305 14 HOH WAT . G 4 HOH B 6 306 16 HOH WAT . G 4 HOH B 7 307 17 HOH WAT . G 4 HOH B 8 308 18 HOH WAT . G 4 HOH B 9 309 21 HOH WAT . G 4 HOH B 10 310 24 HOH WAT . G 4 HOH B 11 311 28 HOH WAT . G 4 HOH B 12 312 30 HOH WAT . G 4 HOH B 13 313 34 HOH WAT . G 4 HOH B 14 314 38 HOH WAT . G 4 HOH B 15 315 39 HOH WAT . G 4 HOH B 16 316 41 HOH WAT . G 4 HOH B 17 317 48 HOH WAT . G 4 HOH B 18 318 51 HOH WAT . G 4 HOH B 19 319 52 HOH WAT . G 4 HOH B 20 320 58 HOH WAT . G 4 HOH B 21 321 59 HOH WAT . G 4 HOH B 22 322 60 HOH WAT . G 4 HOH B 23 323 61 HOH WAT . G 4 HOH B 24 324 64 HOH WAT . G 4 HOH B 25 325 65 HOH WAT . G 4 HOH B 26 326 66 HOH WAT . G 4 HOH B 27 327 68 HOH WAT . G 4 HOH B 28 328 69 HOH WAT . G 4 HOH B 29 329 71 HOH WAT . G 4 HOH B 30 330 72 HOH WAT . G 4 HOH B 31 331 75 HOH WAT . G 4 HOH B 32 332 78 HOH WAT . G 4 HOH B 33 333 79 HOH WAT . G 4 HOH B 34 334 80 HOH WAT . G 4 HOH B 35 335 85 HOH WAT . G 4 HOH B 36 336 86 HOH WAT . G 4 HOH B 37 337 87 HOH WAT . G 4 HOH B 38 338 88 HOH WAT . G 4 HOH B 39 339 90 HOH WAT . G 4 HOH B 40 340 91 HOH WAT . G 4 HOH B 41 341 94 HOH WAT . G 4 HOH B 42 342 97 HOH WAT . G 4 HOH B 43 343 100 HOH WAT . G 4 HOH B 44 344 102 HOH WAT . G 4 HOH B 45 345 103 HOH WAT . G 4 HOH B 46 346 104 HOH WAT . G 4 HOH B 47 347 106 HOH WAT . G 4 HOH B 48 348 110 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA CYC . . . D 3 9.877 17.191 17.096 1 31.37 ? CHA CYC 201 B 1 HETATM 2 N NA CYC . . . D 3 7.486 17.798 17.14 1 34.48 ? NA CYC 201 B 1 HETATM 3 C C1A CYC . . . D 3 8.541 16.955 16.926 1 33.59 ? C1A CYC 201 B 1 HETATM 4 C C2A CYC . . . D 3 8.044 15.661 16.433 1 34.97 ? C2A CYC 201 B 1 HETATM 5 C C3A CYC . . . D 3 6.614 15.851 16.399 1 36.27 ? C3A CYC 201 B 1 HETATM 6 C C4A CYC . . . D 3 6.293 17.201 16.843 1 36.52 ? C4A CYC 201 B 1 HETATM 7 C CMA CYC . . . D 3 5.646 14.783 15.961 1 34.84 ? CMA CYC 201 B 1 HETATM 8 C CAA CYC . . . D 3 8.851 14.446 16.066 1 36.33 ? CAA CYC 201 B 1 HETATM 9 C CBA CYC . . . D 3 9.004 14.18 14.644 1 39.88 ? CBA CYC 201 B 1 HETATM 10 C CGA CYC . . . D 3 10.119 15.056 14.139 1 42.36 ? CGA CYC 201 B 1 HETATM 11 O O1A CYC . . . D 3 9.868 15.617 13.069 1 44.68 ? O1A CYC 201 B 1 HETATM 12 O O2A CYC . . . D 3 11.204 15.187 14.775 1 44.07 ? O2A CYC 201 B 1 HETATM 13 C CHB CYC . . . D 3 4.981 17.9 16.983 1 39.78 ? CHB CYC 201 B 1 HETATM 14 N NB CYC . . . D 3 4.011 17.218 14.93 1 47.81 ? NB CYC 201 B 1 HETATM 15 C C1B CYC . . . D 3 3.931 17.889 16.07 1 44.42 ? C1B CYC 201 B 1 HETATM 16 C C2B CYC . . . D 3 2.648 18.549 16.178 1 46.88 ? C2B CYC 201 B 1 HETATM 17 C C3B CYC . . . D 3 1.901 18.239 15.02 1 48.79 ? C3B CYC 201 B 1 HETATM 18 C C4B CYC . . . D 3 2.85 17.414 14.336 1 49.51 ? C4B CYC 201 B 1 HETATM 19 C CMB CYC . . . D 3 2.209 19.375 17.285 1 46.31 ? CMB CYC 201 B 1 HETATM 20 C CAB CYC . . . D 3 0.5 18.642 14.609 1 49.54 ? CAB CYC 201 B 1 HETATM 21 C CBB CYC . . . D 3 0.412 19.094 13.125 1 52.45 ? CBB CYC 201 B 1 HETATM 22 O OB CYC . . . D 3 2.535 16.88 13.121 1 50.96 ? OB CYC 201 B 1 HETATM 23 N NC CYC . . . D 3 12.683 22.106 20.539 1 22.05 ? NC CYC 201 B 1 HETATM 24 C C1C CYC . . . D 3 13.047 23.074 21.335 1 21.71 ? C1C CYC 201 B 1 HETATM 25 C C2C CYC . . . D 3 12.092 24.263 21.412 1 21.7 ? C2C CYC 201 B 1 HETATM 26 C C3C CYC . . . D 3 11.02 23.832 20.467 1 22.56 ? C3C CYC 201 B 1 HETATM 27 C C4C CYC . . . D 3 11.498 22.468 19.98 1 22.87 ? C4C CYC 201 B 1 HETATM 28 C CMC CYC . . . D 3 11.695 24.614 22.849 1 23.39 ? CMC CYC 201 B 1 HETATM 29 C CAC CYC . . . D 3 10.553 24.867 19.362 1 22.95 ? CAC CYC 201 B 1 HETATM 30 C CBC CYC . . . D 3 9.893 26.08 19.833 1 24.37 ? CBC CYC 201 B 1 HETATM 31 O OC CYC . . . D 3 14.155 23.127 22.06 1 19.85 ? OC CYC 201 B 1 HETATM 32 C CHD CYC . . . D 3 10.844 21.653 19.078 1 22.76 ? CHD CYC 201 B 1 HETATM 33 N ND CYC . . . D 3 10.095 19.517 18.117 1 27.96 ? ND CYC 201 B 1 HETATM 34 C C1D CYC . . . D 3 11.161 20.327 18.503 1 24.9 ? C1D CYC 201 B 1 HETATM 35 C C2D CYC . . . D 3 12.386 19.658 18.238 1 26.37 ? C2D CYC 201 B 1 HETATM 36 C C3D CYC . . . D 3 12.053 18.35 17.662 1 29.12 ? C3D CYC 201 B 1 HETATM 37 C C4D CYC . . . D 3 10.599 18.334 17.614 1 29.21 ? C4D CYC 201 B 1 HETATM 38 C CMD CYC . . . D 3 13.788 20.159 18.487 1 24.38 ? CMD CYC 201 B 1 HETATM 39 C CAD CYC . . . D 3 12.998 17.269 17.211 1 33.16 ? CAD CYC 201 B 1 HETATM 40 C CBD CYC . . . D 3 13.589 16.434 18.208 1 38.44 ? CBD CYC 201 B 1 HETATM 41 C CGD CYC . . . D 3 14.536 15.393 17.604 1 41.29 ? CGD CYC 201 B 1 HETATM 42 O O1D CYC . . . D 3 15.351 14.824 18.277 1 43.33 ? O1D CYC 201 B 1 HETATM 43 O O2D CYC . . . D 3 14.526 15.06 16.325 1 43.07 ? O2D CYC 201 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #