data_4N70 # _model_server_result.job_id nv66-VD9JFoo2LqZLdwvtA _model_server_result.datetime_utc '2024-10-12 13:17:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4n70 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 4N70 # _exptl.entry_id 4N70 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 457.448 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-{4-[(3R,4R,5S)-3-amino-4-hydroxy-5-methylpiperidin-1-yl]pyridin-3-yl}-6-(2,6-difluorophenyl)-5-fluoropyridine-2-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4N70 _cell.length_a 97.95 _cell.length_b 97.95 _cell.length_c 81.08 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4N70 _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C SER 275 A SER 260 1_555 A N SEP 276 A SEP 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale2 A C SEP 276 A SEP 261 1_555 A N GLU 277 A GLU 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? # _chem_comp.formula 'C23 H22 F3 N5 O2' _chem_comp.formula_weight 457.448 _chem_comp.id 2HX _chem_comp.mon_nstd_flag . _chem_comp.name N-{4-[(3R,4R,5S)-3-amino-4-hydroxy-5-methylpiperidin-1-yl]pyridin-3-yl}-6-(2,6-difluorophenyl)-5-fluoropyridine-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4N70 _atom_sites.fract_transf_matrix[1][1] 0.010209 _atom_sites.fract_transf_matrix[1][2] 0.005894 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011789 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012333 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 2HX A 1 401 1 2HX LI1 . C 3 HOH A 1 501 1 HOH HOH . C 3 HOH A 2 502 2 HOH HOH . C 3 HOH A 3 503 3 HOH HOH . C 3 HOH A 4 504 4 HOH HOH . C 3 HOH A 5 505 5 HOH HOH . C 3 HOH A 6 506 6 HOH HOH . C 3 HOH A 7 507 7 HOH HOH . C 3 HOH A 8 508 8 HOH HOH . C 3 HOH A 9 509 9 HOH HOH . C 3 HOH A 10 510 10 HOH HOH . C 3 HOH A 11 511 11 HOH HOH . C 3 HOH A 12 512 12 HOH HOH . C 3 HOH A 13 513 13 HOH HOH . C 3 HOH A 14 514 14 HOH HOH . C 3 HOH A 15 515 15 HOH HOH . C 3 HOH A 16 516 16 HOH HOH . C 3 HOH A 17 517 17 HOH HOH . C 3 HOH A 18 518 18 HOH HOH . C 3 HOH A 19 519 19 HOH HOH . C 3 HOH A 20 520 20 HOH HOH . C 3 HOH A 21 521 21 HOH HOH . C 3 HOH A 22 522 22 HOH HOH . C 3 HOH A 23 523 23 HOH HOH . C 3 HOH A 24 524 24 HOH HOH . C 3 HOH A 25 525 25 HOH HOH . C 3 HOH A 26 526 26 HOH HOH . C 3 HOH A 27 527 27 HOH HOH . C 3 HOH A 28 528 28 HOH HOH . C 3 HOH A 29 529 29 HOH HOH . C 3 HOH A 30 530 30 HOH HOH . C 3 HOH A 31 531 31 HOH HOH . C 3 HOH A 32 532 32 HOH HOH . C 3 HOH A 33 533 33 HOH HOH . C 3 HOH A 34 534 34 HOH HOH . C 3 HOH A 35 535 35 HOH HOH . C 3 HOH A 36 536 37 HOH HOH . C 3 HOH A 37 537 38 HOH HOH . C 3 HOH A 38 538 39 HOH HOH . C 3 HOH A 39 539 40 HOH HOH . C 3 HOH A 40 540 41 HOH HOH . C 3 HOH A 41 541 42 HOH HOH . C 3 HOH A 42 542 43 HOH HOH . C 3 HOH A 43 543 44 HOH HOH . C 3 HOH A 44 544 45 HOH HOH . C 3 HOH A 45 545 46 HOH HOH . C 3 HOH A 46 546 47 HOH HOH . C 3 HOH A 47 547 48 HOH HOH . C 3 HOH A 48 548 49 HOH HOH . C 3 HOH A 49 549 50 HOH HOH . C 3 HOH A 50 550 51 HOH HOH . C 3 HOH A 51 551 52 HOH HOH . C 3 HOH A 52 552 53 HOH HOH . C 3 HOH A 53 553 54 HOH HOH . C 3 HOH A 54 554 55 HOH HOH . C 3 HOH A 55 555 56 HOH HOH . C 3 HOH A 56 556 57 HOH HOH . C 3 HOH A 57 557 58 HOH HOH . C 3 HOH A 58 558 59 HOH HOH . C 3 HOH A 59 559 61 HOH HOH . C 3 HOH A 60 560 62 HOH HOH . C 3 HOH A 61 561 63 HOH HOH . C 3 HOH A 62 562 64 HOH HOH . C 3 HOH A 63 563 65 HOH HOH . C 3 HOH A 64 564 66 HOH HOH . C 3 HOH A 65 565 67 HOH HOH . C 3 HOH A 66 566 68 HOH HOH . C 3 HOH A 67 567 69 HOH HOH . C 3 HOH A 68 568 70 HOH HOH . C 3 HOH A 69 569 71 HOH HOH . C 3 HOH A 70 570 72 HOH HOH . C 3 HOH A 71 571 73 HOH HOH . C 3 HOH A 72 572 74 HOH HOH . C 3 HOH A 73 573 75 HOH HOH . C 3 HOH A 74 574 76 HOH HOH . C 3 HOH A 75 575 77 HOH HOH . C 3 HOH A 76 576 79 HOH HOH . C 3 HOH A 77 577 80 HOH HOH . C 3 HOH A 78 578 81 HOH HOH . C 3 HOH A 79 579 82 HOH HOH . C 3 HOH A 80 580 83 HOH HOH . C 3 HOH A 81 581 84 HOH HOH . C 3 HOH A 82 582 85 HOH HOH . C 3 HOH A 83 583 86 HOH HOH . C 3 HOH A 84 584 87 HOH HOH . C 3 HOH A 85 585 88 HOH HOH . C 3 HOH A 86 586 89 HOH HOH . C 3 HOH A 87 587 90 HOH HOH . C 3 HOH A 88 588 91 HOH HOH . C 3 HOH A 89 589 92 HOH HOH . C 3 HOH A 90 590 93 HOH HOH . C 3 HOH A 91 591 94 HOH HOH . C 3 HOH A 92 592 95 HOH HOH . C 3 HOH A 93 593 96 HOH HOH . C 3 HOH A 94 594 97 HOH HOH . C 3 HOH A 95 595 99 HOH HOH . C 3 HOH A 96 596 100 HOH HOH . C 3 HOH A 97 597 104 HOH HOH . C 3 HOH A 98 598 105 HOH HOH . C 3 HOH A 99 599 107 HOH HOH . C 3 HOH A 100 600 108 HOH HOH . C 3 HOH A 101 601 109 HOH HOH . C 3 HOH A 102 602 111 HOH HOH . C 3 HOH A 103 603 112 HOH HOH . C 3 HOH A 104 604 114 HOH HOH . C 3 HOH A 105 605 115 HOH HOH . C 3 HOH A 106 606 116 HOH HOH . C 3 HOH A 107 607 117 HOH HOH . C 3 HOH A 108 608 118 HOH HOH . C 3 HOH A 109 609 119 HOH HOH . C 3 HOH A 110 610 120 HOH HOH . C 3 HOH A 111 611 121 HOH HOH . C 3 HOH A 112 612 122 HOH HOH . C 3 HOH A 113 613 123 HOH HOH . C 3 HOH A 114 614 124 HOH HOH . C 3 HOH A 115 615 125 HOH HOH . C 3 HOH A 116 616 126 HOH HOH . C 3 HOH A 117 617 127 HOH HOH . C 3 HOH A 118 618 128 HOH HOH . C 3 HOH A 119 619 129 HOH HOH . C 3 HOH A 120 620 130 HOH HOH . C 3 HOH A 121 621 131 HOH HOH . C 3 HOH A 122 622 132 HOH HOH . C 3 HOH A 123 623 133 HOH HOH . C 3 HOH A 124 624 134 HOH HOH . C 3 HOH A 125 625 135 HOH HOH . C 3 HOH A 126 626 136 HOH HOH . C 3 HOH A 127 627 137 HOH HOH . C 3 HOH A 128 628 138 HOH HOH . C 3 HOH A 129 629 139 HOH HOH . C 3 HOH A 130 630 140 HOH HOH . C 3 HOH A 131 631 141 HOH HOH . C 3 HOH A 132 632 142 HOH HOH . C 3 HOH A 133 633 143 HOH HOH . C 3 HOH A 134 634 144 HOH HOH . C 3 HOH A 135 635 146 HOH HOH . C 3 HOH A 136 636 147 HOH HOH . C 3 HOH A 137 637 148 HOH HOH . C 3 HOH A 138 638 149 HOH HOH . C 3 HOH A 139 639 150 HOH HOH . C 3 HOH A 140 640 151 HOH HOH . C 3 HOH A 141 641 152 HOH HOH . C 3 HOH A 142 642 153 HOH HOH . C 3 HOH A 143 643 154 HOH HOH . C 3 HOH A 144 644 155 HOH HOH . C 3 HOH A 145 645 156 HOH HOH . C 3 HOH A 146 646 157 HOH HOH . C 3 HOH A 147 647 159 HOH HOH . C 3 HOH A 148 648 161 HOH HOH . C 3 HOH A 149 649 162 HOH HOH . C 3 HOH A 150 650 163 HOH HOH . C 3 HOH A 151 651 165 HOH HOH . C 3 HOH A 152 652 166 HOH HOH . C 3 HOH A 153 653 167 HOH HOH . C 3 HOH A 154 654 168 HOH HOH . C 3 HOH A 155 655 170 HOH HOH . C 3 HOH A 156 656 171 HOH HOH . C 3 HOH A 157 657 172 HOH HOH . C 3 HOH A 158 658 173 HOH HOH . C 3 HOH A 159 659 174 HOH HOH . C 3 HOH A 160 660 175 HOH HOH . C 3 HOH A 161 661 176 HOH HOH . C 3 HOH A 162 662 177 HOH HOH . C 3 HOH A 163 663 179 HOH HOH . C 3 HOH A 164 664 180 HOH HOH . C 3 HOH A 165 665 181 HOH HOH . C 3 HOH A 166 666 182 HOH HOH . C 3 HOH A 167 667 183 HOH HOH . C 3 HOH A 168 668 184 HOH HOH . C 3 HOH A 169 669 185 HOH HOH . C 3 HOH A 170 670 186 HOH HOH . C 3 HOH A 171 671 188 HOH HOH . C 3 HOH A 172 672 189 HOH HOH . C 3 HOH A 173 673 190 HOH HOH . C 3 HOH A 174 674 191 HOH HOH . C 3 HOH A 175 675 192 HOH HOH . C 3 HOH A 176 676 195 HOH HOH . C 3 HOH A 177 677 196 HOH HOH . C 3 HOH A 178 678 197 HOH HOH . C 3 HOH A 179 679 198 HOH HOH . C 3 HOH A 180 680 199 HOH HOH . C 3 HOH A 181 681 200 HOH HOH . C 3 HOH A 182 682 201 HOH HOH . C 3 HOH A 183 683 202 HOH HOH . C 3 HOH A 184 684 203 HOH HOH . C 3 HOH A 185 685 204 HOH HOH . C 3 HOH A 186 686 205 HOH HOH . C 3 HOH A 187 687 206 HOH HOH . C 3 HOH A 188 688 207 HOH HOH . C 3 HOH A 189 689 208 HOH HOH . C 3 HOH A 190 690 209 HOH HOH . C 3 HOH A 191 691 210 HOH HOH . C 3 HOH A 192 692 211 HOH HOH . C 3 HOH A 193 693 212 HOH HOH . C 3 HOH A 194 694 213 HOH HOH . C 3 HOH A 195 695 214 HOH HOH . C 3 HOH A 196 696 216 HOH HOH . C 3 HOH A 197 697 217 HOH HOH . C 3 HOH A 198 698 218 HOH HOH . C 3 HOH A 199 699 220 HOH HOH . C 3 HOH A 200 700 221 HOH HOH . C 3 HOH A 201 701 222 HOH HOH . C 3 HOH A 202 702 223 HOH HOH . C 3 HOH A 203 703 224 HOH HOH . C 3 HOH A 204 704 226 HOH HOH . C 3 HOH A 205 705 227 HOH HOH . C 3 HOH A 206 706 228 HOH HOH . C 3 HOH A 207 707 229 HOH HOH . C 3 HOH A 208 708 231 HOH HOH . C 3 HOH A 209 709 232 HOH HOH . C 3 HOH A 210 710 233 HOH HOH . C 3 HOH A 211 711 234 HOH HOH . C 3 HOH A 212 712 236 HOH HOH . C 3 HOH A 213 713 237 HOH HOH . C 3 HOH A 214 714 238 HOH HOH . C 3 HOH A 215 715 239 HOH HOH . C 3 HOH A 216 716 240 HOH HOH . C 3 HOH A 217 717 241 HOH HOH . C 3 HOH A 218 718 242 HOH HOH . C 3 HOH A 219 719 243 HOH HOH . C 3 HOH A 220 720 244 HOH HOH . C 3 HOH A 221 721 246 HOH HOH . C 3 HOH A 222 722 247 HOH HOH . C 3 HOH A 223 723 248 HOH HOH . C 3 HOH A 224 724 249 HOH HOH . C 3 HOH A 225 725 250 HOH HOH . C 3 HOH A 226 726 252 HOH HOH . C 3 HOH A 227 727 253 HOH HOH . C 3 HOH A 228 728 254 HOH HOH . C 3 HOH A 229 729 255 HOH HOH . C 3 HOH A 230 730 256 HOH HOH . C 3 HOH A 231 731 257 HOH HOH . C 3 HOH A 232 732 258 HOH HOH . C 3 HOH A 233 733 259 HOH HOH . C 3 HOH A 234 734 261 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 2HX . . . B 2 -18.928 37.004 -4.871 1 29.77 ? C1 2HX 401 A 1 HETATM 2 C C2 2HX . . . B 2 -18.396 35.779 -4.12 1 24.54 ? C2 2HX 401 A 1 HETATM 3 N N3 2HX . . . B 2 -16.957 35.907 -3.782 1 26.62 ? N3 2HX 401 A 1 HETATM 4 C C4 2HX . . . B 2 -16.024 36.202 -4.874 1 22.67 ? C4 2HX 401 A 1 HETATM 5 C C5 2HX . . . B 2 -16.49 37.492 -5.57 1 19.58 ? C5 2HX 401 A 1 HETATM 6 C C6 2HX . . . B 2 -17.985 37.337 -6.068 1 25.5 ? C6 2HX 401 A 1 HETATM 7 C C7 2HX . . . B 2 -16.504 35.137 -2.719 1 24.42 ? C7 2HX 401 A 1 HETATM 8 C C8 2HX . . . B 2 -15.539 34.149 -2.95 1 21.26 ? C8 2HX 401 A 1 HETATM 9 C C9 2HX . . . B 2 -15.092 33.367 -1.891 1 25.87 ? C9 2HX 401 A 1 HETATM 10 N N10 2HX . . . B 2 -15.581 33.492 -0.648 1 22.85 ? N10 2HX 401 A 1 HETATM 11 C C11 2HX . . . B 2 -16.507 34.452 -0.427 1 27.4 ? C11 2HX 401 A 1 HETATM 12 C C12 2HX . . . B 2 -17.023 35.273 -1.435 1 22.38 ? C12 2HX 401 A 1 HETATM 13 N N13 2HX . . . B 2 -17.984 36.268 -1.213 1 24.17 ? N13 2HX 401 A 1 HETATM 14 C C14 2HX . . . B 2 -20.376 36.732 -5.299 1 29.85 ? C14 2HX 401 A 1 HETATM 15 C C15 2HX . . . B 2 -18.379 36.739 0.019 1 27.03 ? C15 2HX 401 A 1 HETATM 16 C C16 2HX . . . B 2 -19.303 37.903 -0.004 1 28.59 ? C16 2HX 401 A 1 HETATM 17 O O17 2HX . . . B 2 -18.022 36.328 1.106 1 29.96 ? O17 2HX 401 A 1 HETATM 18 C C18 2HX . . . B 2 -19.772 38.496 1.204 1 27.99 ? C18 2HX 401 A 1 HETATM 19 C C19 2HX . . . B 2 -20.596 39.62 1.039 1 27.66 ? C19 2HX 401 A 1 HETATM 20 C C20 2HX . . . B 2 -20.9 40.094 -0.268 1 27.73 ? C20 2HX 401 A 1 HETATM 21 C C21 2HX . . . B 2 -20.398 39.438 -1.392 1 24.81 ? C21 2HX 401 A 1 HETATM 22 N N22 2HX . . . B 2 -19.595 38.334 -1.267 1 24.14 ? N22 2HX 401 A 1 HETATM 23 C C23 2HX . . . B 2 -20.737 39.874 -2.757 1 29.98 ? C23 2HX 401 A 1 HETATM 24 F F24 2HX . . . B 2 -21.704 41.173 -0.434 1 29.67 ? F24 2HX 401 A 1 HETATM 25 N N25 2HX . . . B 2 -15.642 37.859 -6.717 1 21.23 ? N25 2HX 401 A 1 HETATM 26 C C26 2HX . . . B 2 -22.108 40.016 -3.192 1 30.45 ? C26 2HX 401 A 1 HETATM 27 C C27 2HX . . . B 2 -22.482 40.449 -4.501 1 30.89 ? C27 2HX 401 A 1 HETATM 28 C C28 2HX . . . B 2 -21.493 40.804 -5.468 1 34.04 ? C28 2HX 401 A 1 HETATM 29 C C29 2HX . . . B 2 -20.239 40.561 -4.941 1 32.41 ? C29 2HX 401 A 1 HETATM 30 C C30 2HX . . . B 2 -19.739 40.217 -3.7 1 31.43 ? C30 2HX 401 A 1 HETATM 31 F F31 2HX . . . B 2 -18.453 40.089 -3.44 1 30.7 ? F31 2HX 401 A 1 HETATM 32 F F32 2HX . . . B 2 -23.065 39.688 -2.289 1 31.85 ? F32 2HX 401 A 1 HETATM 33 O O33 2HX . . . B 2 -18.35 38.591 -6.696 1 25.58 ? O33 2HX 401 A 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 33 #