data_4N7D
#
_model_server_result.job_id            NHM-u0K2tPDAkgk6og4D0g 
_model_server_result.datetime_utc      '2024-11-08 12:36:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4n7d 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":203}' 
#
_entry.id    4N7D 
#
_exptl.entry_id    4N7D 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4N7D 
_cell.length_a            60.166 
_cell.length_b            60.166 
_cell.length_c            124.927 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4N7D 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E 1 1 
A,B,C,D,E 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 10 A CYS 10 1_555 A SG CYS 112 A CYS 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? 
disulf ? disulf2 A SG CYS 44 A CYS 44 1_555 A SG CYS 175 A CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? 
covale ? covale1 A C ARG 126 A ARG 126 1_555 A N MSE 127 A MSE 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.303 ? 
covale ? covale2 A C MSE 127 A MSE 127 1_555 A N THR 128 A THR 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale3 A C GLU 140 A GLU 140 1_555 A N MSE 141 A MSE 141 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.339 ? 
covale ? covale4 A C GLU 140 A GLU 140 1_555 A N MSE 141 A MSE 141 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.331 ? 
covale ? covale5 A C MSE 141 A MSE 141 1_555 A N LEU 142 A LEU 142 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale6 A C MSE 141 A MSE 141 1_555 A N LEU 142 A LEU 142 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.342 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 149 n n 
C1 C2 GOL sing 150 n n 
C1 H11 GOL sing 151 n n 
C1 H12 GOL sing 152 n n 
O1 HO1 GOL sing 153 n n 
C2 O2 GOL sing 154 n n 
C2 C3 GOL sing 155 n n 
C2 H2 GOL sing 156 n n 
O2 HO2 GOL sing 157 n n 
C3 O3 GOL sing 158 n n 
C3 H31 GOL sing 159 n n 
C3 H32 GOL sing 160 n n 
O3 HO3 GOL sing 161 n n 
#
_atom_sites.entry_id                     4N7D 
_atom_sites.fract_transf_matrix[1][1]    0.016621 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016621 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008005 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CIT A 1 201 1 CIT CIT . 
C 3 GOL A 1 202 1 GOL GOL . 
D 3 GOL A 1 203 1 GOL GOL . 
E 4 HOH A 1 301 1 HOH HOH . 
E 4 HOH A 2 302 2 HOH HOH . 
E 4 HOH A 3 303 3 HOH HOH . 
E 4 HOH A 4 304 4 HOH HOH . 
E 4 HOH A 5 305 5 HOH HOH . 
E 4 HOH A 6 306 6 HOH HOH . 
E 4 HOH A 7 307 7 HOH HOH . 
E 4 HOH A 8 308 8 HOH HOH . 
E 4 HOH A 9 309 9 HOH HOH . 
E 4 HOH A 10 310 10 HOH HOH . 
E 4 HOH A 11 311 11 HOH HOH . 
E 4 HOH A 12 312 12 HOH HOH . 
E 4 HOH A 13 313 13 HOH HOH . 
E 4 HOH A 14 314 14 HOH HOH . 
E 4 HOH A 15 315 15 HOH HOH . 
E 4 HOH A 16 316 16 HOH HOH . 
E 4 HOH A 17 317 17 HOH HOH . 
E 4 HOH A 18 318 18 HOH HOH . 
E 4 HOH A 19 319 19 HOH HOH . 
E 4 HOH A 20 320 20 HOH HOH . 
E 4 HOH A 21 321 21 HOH HOH . 
E 4 HOH A 22 322 22 HOH HOH . 
E 4 HOH A 23 323 23 HOH HOH . 
E 4 HOH A 24 324 24 HOH HOH . 
E 4 HOH A 25 325 25 HOH HOH . 
E 4 HOH A 26 326 26 HOH HOH . 
E 4 HOH A 27 327 28 HOH HOH . 
E 4 HOH A 28 328 29 HOH HOH . 
E 4 HOH A 29 329 33 HOH HOH . 
E 4 HOH A 30 330 34 HOH HOH . 
E 4 HOH A 31 331 35 HOH HOH . 
E 4 HOH A 32 332 36 HOH HOH . 
E 4 HOH A 33 333 37 HOH HOH . 
E 4 HOH A 34 334 38 HOH HOH . 
E 4 HOH A 35 335 39 HOH HOH . 
E 4 HOH A 36 336 40 HOH HOH . 
E 4 HOH A 37 337 41 HOH HOH . 
E 4 HOH A 38 338 42 HOH HOH . 
E 4 HOH A 39 339 43 HOH HOH . 
E 4 HOH A 40 340 44 HOH HOH . 
E 4 HOH A 41 341 45 HOH HOH . 
E 4 HOH A 42 342 46 HOH HOH . 
E 4 HOH A 43 343 47 HOH HOH . 
E 4 HOH A 44 344 48 HOH HOH . 
E 4 HOH A 45 345 49 HOH HOH . 
E 4 HOH A 46 346 50 HOH HOH . 
E 4 HOH A 47 347 51 HOH HOH . 
E 4 HOH A 48 348 52 HOH HOH . 
E 4 HOH A 49 349 53 HOH HOH . 
E 4 HOH A 50 350 54 HOH HOH . 
E 4 HOH A 51 351 55 HOH HOH . 
E 4 HOH A 52 352 56 HOH HOH . 
E 4 HOH A 53 353 57 HOH HOH . 
E 4 HOH A 54 354 58 HOH HOH . 
E 4 HOH A 55 355 59 HOH HOH . 
E 4 HOH A 56 356 60 HOH HOH . 
E 4 HOH A 57 357 61 HOH HOH . 
E 4 HOH A 58 358 62 HOH HOH . 
E 4 HOH A 59 359 63 HOH HOH . 
E 4 HOH A 60 360 65 HOH HOH . 
E 4 HOH A 61 361 66 HOH HOH . 
E 4 HOH A 62 362 67 HOH HOH . 
E 4 HOH A 63 363 69 HOH HOH . 
E 4 HOH A 64 364 70 HOH HOH . 
E 4 HOH A 65 365 71 HOH HOH . 
E 4 HOH A 66 366 72 HOH HOH . 
E 4 HOH A 67 367 73 HOH HOH . 
E 4 HOH A 68 368 75 HOH HOH . 
E 4 HOH A 69 369 76 HOH HOH . 
E 4 HOH A 70 370 77 HOH HOH . 
E 4 HOH A 71 371 78 HOH HOH . 
E 4 HOH A 72 372 80 HOH HOH . 
E 4 HOH A 73 373 81 HOH HOH . 
E 4 HOH A 74 374 82 HOH HOH . 
E 4 HOH A 75 375 83 HOH HOH . 
E 4 HOH A 76 376 85 HOH HOH . 
E 4 HOH A 77 377 86 HOH HOH . 
E 4 HOH A 78 378 87 HOH HOH . 
E 4 HOH A 79 379 88 HOH HOH . 
E 4 HOH A 80 380 89 HOH HOH . 
E 4 HOH A 81 381 90 HOH HOH . 
E 4 HOH A 82 382 91 HOH HOH . 
E 4 HOH A 83 383 92 HOH HOH . 
E 4 HOH A 84 384 93 HOH HOH . 
E 4 HOH A 85 385 94 HOH HOH . 
E 4 HOH A 86 386 95 HOH HOH . 
E 4 HOH A 87 387 96 HOH HOH . 
E 4 HOH A 88 388 97 HOH HOH . 
E 4 HOH A 89 389 98 HOH HOH . 
E 4 HOH A 90 390 99 HOH HOH . 
E 4 HOH A 91 391 100 HOH HOH . 
E 4 HOH A 92 392 101 HOH HOH . 
E 4 HOH A 93 393 102 HOH HOH . 
E 4 HOH A 94 394 104 HOH HOH . 
E 4 HOH A 95 395 105 HOH HOH . 
E 4 HOH A 96 396 106 HOH HOH . 
E 4 HOH A 97 397 107 HOH HOH . 
E 4 HOH A 98 398 109 HOH HOH . 
E 4 HOH A 99 399 110 HOH HOH . 
E 4 HOH A 100 400 111 HOH HOH . 
E 4 HOH A 101 401 112 HOH HOH . 
E 4 HOH A 102 402 113 HOH HOH . 
E 4 HOH A 103 403 114 HOH HOH . 
E 4 HOH A 104 404 115 HOH HOH . 
E 4 HOH A 105 405 116 HOH HOH . 
E 4 HOH A 106 406 117 HOH HOH . 
E 4 HOH A 107 407 118 HOH HOH . 
E 4 HOH A 108 408 119 HOH HOH . 
E 4 HOH A 109 409 120 HOH HOH . 
E 4 HOH A 110 410 121 HOH HOH . 
E 4 HOH A 111 411 122 HOH HOH . 
E 4 HOH A 112 412 123 HOH HOH . 
E 4 HOH A 113 413 124 HOH HOH . 
E 4 HOH A 114 414 125 HOH HOH . 
E 4 HOH A 115 415 126 HOH HOH . 
E 4 HOH A 116 416 127 HOH HOH . 
E 4 HOH A 117 417 129 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 3 4.657 -30.322 2.027 1 66.8 ? C1 GOL 203 A 1 
HETATM 2 O O1 GOL . . . D 3 3.913 -31.567 1.824 1 68.07 ? O1 GOL 203 A 1 
HETATM 3 C C2 GOL . . . D 3 5.261 -30.084 3.446 1 64.51 ? C2 GOL 203 A 1 
HETATM 4 O O2 GOL . . . D 3 4.413 -29.327 4.37 1 57.17 ? O2 GOL 203 A 1 
HETATM 5 C C3 GOL . . . D 3 6.578 -29.308 3.323 1 67.17 ? C3 GOL 203 A 1 
HETATM 6 O O3 GOL . . . D 3 7.402 -29.492 4.477 1 58.73 ? O3 GOL 203 A 1 
#
_model_server_stats.io_time_ms              25 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           295 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#