data_4N7D # _model_server_result.job_id 69h80LcNgQvC-pOHszMqrQ _model_server_result.datetime_utc '2024-11-25 02:01:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4n7d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 4N7D # _exptl.entry_id 4N7D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4N7D _cell.length_a 60.166 _cell.length_b 60.166 _cell.length_c 124.927 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4N7D _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E 1 1 A,B,C,D,E 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 10 A CYS 10 1_555 A SG CYS 112 A CYS 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? disulf ? disulf2 A SG CYS 44 A CYS 44 1_555 A SG CYS 175 A CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? covale ? covale1 A C ARG 126 A ARG 126 1_555 A N MSE 127 A MSE 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.303 ? covale ? covale2 A C MSE 127 A MSE 127 1_555 A N THR 128 A THR 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale3 A C GLU 140 A GLU 140 1_555 A N MSE 141 A MSE 141 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.339 ? covale ? covale4 A C GLU 140 A GLU 140 1_555 A N MSE 141 A MSE 141 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.331 ? covale ? covale5 A C MSE 141 A MSE 141 1_555 A N LEU 142 A LEU 142 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale6 A C MSE 141 A MSE 141 1_555 A N LEU 142 A LEU 142 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.342 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 149 n n C1 C2 GOL sing 150 n n C1 H11 GOL sing 151 n n C1 H12 GOL sing 152 n n O1 HO1 GOL sing 153 n n C2 O2 GOL sing 154 n n C2 C3 GOL sing 155 n n C2 H2 GOL sing 156 n n O2 HO2 GOL sing 157 n n C3 O3 GOL sing 158 n n C3 H31 GOL sing 159 n n C3 H32 GOL sing 160 n n O3 HO3 GOL sing 161 n n # _atom_sites.entry_id 4N7D _atom_sites.fract_transf_matrix[1][1] 0.016621 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016621 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008005 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CIT A 1 201 1 CIT CIT . C 3 GOL A 1 202 1 GOL GOL . D 3 GOL A 1 203 1 GOL GOL . E 4 HOH A 1 301 1 HOH HOH . E 4 HOH A 2 302 2 HOH HOH . E 4 HOH A 3 303 3 HOH HOH . E 4 HOH A 4 304 4 HOH HOH . E 4 HOH A 5 305 5 HOH HOH . E 4 HOH A 6 306 6 HOH HOH . E 4 HOH A 7 307 7 HOH HOH . E 4 HOH A 8 308 8 HOH HOH . E 4 HOH A 9 309 9 HOH HOH . E 4 HOH A 10 310 10 HOH HOH . E 4 HOH A 11 311 11 HOH HOH . E 4 HOH A 12 312 12 HOH HOH . E 4 HOH A 13 313 13 HOH HOH . E 4 HOH A 14 314 14 HOH HOH . E 4 HOH A 15 315 15 HOH HOH . E 4 HOH A 16 316 16 HOH HOH . E 4 HOH A 17 317 17 HOH HOH . E 4 HOH A 18 318 18 HOH HOH . E 4 HOH A 19 319 19 HOH HOH . E 4 HOH A 20 320 20 HOH HOH . E 4 HOH A 21 321 21 HOH HOH . E 4 HOH A 22 322 22 HOH HOH . E 4 HOH A 23 323 23 HOH HOH . E 4 HOH A 24 324 24 HOH HOH . E 4 HOH A 25 325 25 HOH HOH . E 4 HOH A 26 326 26 HOH HOH . E 4 HOH A 27 327 28 HOH HOH . E 4 HOH A 28 328 29 HOH HOH . E 4 HOH A 29 329 33 HOH HOH . E 4 HOH A 30 330 34 HOH HOH . E 4 HOH A 31 331 35 HOH HOH . E 4 HOH A 32 332 36 HOH HOH . E 4 HOH A 33 333 37 HOH HOH . E 4 HOH A 34 334 38 HOH HOH . E 4 HOH A 35 335 39 HOH HOH . E 4 HOH A 36 336 40 HOH HOH . E 4 HOH A 37 337 41 HOH HOH . E 4 HOH A 38 338 42 HOH HOH . E 4 HOH A 39 339 43 HOH HOH . E 4 HOH A 40 340 44 HOH HOH . E 4 HOH A 41 341 45 HOH HOH . E 4 HOH A 42 342 46 HOH HOH . E 4 HOH A 43 343 47 HOH HOH . E 4 HOH A 44 344 48 HOH HOH . E 4 HOH A 45 345 49 HOH HOH . E 4 HOH A 46 346 50 HOH HOH . E 4 HOH A 47 347 51 HOH HOH . E 4 HOH A 48 348 52 HOH HOH . E 4 HOH A 49 349 53 HOH HOH . E 4 HOH A 50 350 54 HOH HOH . E 4 HOH A 51 351 55 HOH HOH . E 4 HOH A 52 352 56 HOH HOH . E 4 HOH A 53 353 57 HOH HOH . E 4 HOH A 54 354 58 HOH HOH . E 4 HOH A 55 355 59 HOH HOH . E 4 HOH A 56 356 60 HOH HOH . E 4 HOH A 57 357 61 HOH HOH . E 4 HOH A 58 358 62 HOH HOH . E 4 HOH A 59 359 63 HOH HOH . E 4 HOH A 60 360 65 HOH HOH . E 4 HOH A 61 361 66 HOH HOH . E 4 HOH A 62 362 67 HOH HOH . E 4 HOH A 63 363 69 HOH HOH . E 4 HOH A 64 364 70 HOH HOH . E 4 HOH A 65 365 71 HOH HOH . E 4 HOH A 66 366 72 HOH HOH . E 4 HOH A 67 367 73 HOH HOH . E 4 HOH A 68 368 75 HOH HOH . E 4 HOH A 69 369 76 HOH HOH . E 4 HOH A 70 370 77 HOH HOH . E 4 HOH A 71 371 78 HOH HOH . E 4 HOH A 72 372 80 HOH HOH . E 4 HOH A 73 373 81 HOH HOH . E 4 HOH A 74 374 82 HOH HOH . E 4 HOH A 75 375 83 HOH HOH . E 4 HOH A 76 376 85 HOH HOH . E 4 HOH A 77 377 86 HOH HOH . E 4 HOH A 78 378 87 HOH HOH . E 4 HOH A 79 379 88 HOH HOH . E 4 HOH A 80 380 89 HOH HOH . E 4 HOH A 81 381 90 HOH HOH . E 4 HOH A 82 382 91 HOH HOH . E 4 HOH A 83 383 92 HOH HOH . E 4 HOH A 84 384 93 HOH HOH . E 4 HOH A 85 385 94 HOH HOH . E 4 HOH A 86 386 95 HOH HOH . E 4 HOH A 87 387 96 HOH HOH . E 4 HOH A 88 388 97 HOH HOH . E 4 HOH A 89 389 98 HOH HOH . E 4 HOH A 90 390 99 HOH HOH . E 4 HOH A 91 391 100 HOH HOH . E 4 HOH A 92 392 101 HOH HOH . E 4 HOH A 93 393 102 HOH HOH . E 4 HOH A 94 394 104 HOH HOH . E 4 HOH A 95 395 105 HOH HOH . E 4 HOH A 96 396 106 HOH HOH . E 4 HOH A 97 397 107 HOH HOH . E 4 HOH A 98 398 109 HOH HOH . E 4 HOH A 99 399 110 HOH HOH . E 4 HOH A 100 400 111 HOH HOH . E 4 HOH A 101 401 112 HOH HOH . E 4 HOH A 102 402 113 HOH HOH . E 4 HOH A 103 403 114 HOH HOH . E 4 HOH A 104 404 115 HOH HOH . E 4 HOH A 105 405 116 HOH HOH . E 4 HOH A 106 406 117 HOH HOH . E 4 HOH A 107 407 118 HOH HOH . E 4 HOH A 108 408 119 HOH HOH . E 4 HOH A 109 409 120 HOH HOH . E 4 HOH A 110 410 121 HOH HOH . E 4 HOH A 111 411 122 HOH HOH . E 4 HOH A 112 412 123 HOH HOH . E 4 HOH A 113 413 124 HOH HOH . E 4 HOH A 114 414 125 HOH HOH . E 4 HOH A 115 415 126 HOH HOH . E 4 HOH A 116 416 127 HOH HOH . E 4 HOH A 117 417 129 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 3 4.657 -30.322 2.027 1 66.8 ? C1 GOL 203 A 1 HETATM 2 O O1 GOL . . . D 3 3.913 -31.567 1.824 1 68.07 ? O1 GOL 203 A 1 HETATM 3 C C2 GOL . . . D 3 5.261 -30.084 3.446 1 64.51 ? C2 GOL 203 A 1 HETATM 4 O O2 GOL . . . D 3 4.413 -29.327 4.37 1 57.17 ? O2 GOL 203 A 1 HETATM 5 C C3 GOL . . . D 3 6.578 -29.308 3.323 1 67.17 ? C3 GOL 203 A 1 HETATM 6 O O3 GOL . . . D 3 7.402 -29.492 4.477 1 58.73 ? O3 GOL 203 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #