data_4N7I # _model_server_result.job_id TlzIDRDSPDsI4NlRkjQiXQ _model_server_result.datetime_utc '2024-11-28 00:03:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4n7i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":504}' # _entry.id 4N7I # _exptl.entry_id 4N7I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description BETA-MERCAPTOETHANOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4N7I _cell.length_a 39.032 _cell.length_b 44.957 _cell.length_c 124.813 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4N7I _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H 1 1 A,B,C,D,E,F,G,H 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 62 A CYS 357 1_555 D S2 BME . A BME 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale2 A SG CYS 186 A CYS 481 1_555 E S2 BME . A BME 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc1 F MG MG . A MG 505 1_555 H O HOH . A HOH 696 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? metalc ? metalc2 F MG MG . A MG 505 1_555 H O HOH . A HOH 744 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? metalc ? metalc3 F MG MG . A MG 505 1_555 H O HOH . A HOH 757 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc4 F MG MG . A MG 505 1_555 H O HOH . A HOH 767 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? metalc ? metalc5 F MG MG . A MG 505 1_555 H O HOH . A HOH 785 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc6 F MG MG . A MG 505 1_555 H O HOH . A HOH 794 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id BME _chem_comp.mon_nstd_flag . _chem_comp.name BETA-MERCAPTOETHANOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 BME sing 70 n n C1 O1 BME sing 71 n n C1 H11 BME sing 72 n n C1 H12 BME sing 73 n n C2 S2 BME sing 74 n n C2 H21 BME sing 75 n n C2 H22 BME sing 76 n n O1 HO1 BME sing 77 n n S2 HS2 BME sing 78 n n # _atom_sites.entry_id 4N7I _atom_sites.fract_transf_matrix[1][1] 0.02562 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022243 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008012 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 501 1 GOL GOL . C 2 GOL A 1 502 2 GOL GOL . D 3 BME A 1 503 3 BME BME . E 3 BME A 1 504 4 BME BME . F 4 MG A 1 505 5 MG MG . G 5 CL A 1 506 6 CL CL . H 6 HOH A 1 601 1 HOH HOH . H 6 HOH A 2 602 2 HOH HOH . H 6 HOH A 3 603 3 HOH HOH . H 6 HOH A 4 604 4 HOH HOH . H 6 HOH A 5 605 5 HOH HOH . H 6 HOH A 6 606 6 HOH HOH . H 6 HOH A 7 607 7 HOH HOH . H 6 HOH A 8 608 8 HOH HOH . H 6 HOH A 9 609 9 HOH HOH . H 6 HOH A 10 610 10 HOH HOH . H 6 HOH A 11 611 11 HOH HOH . H 6 HOH A 12 612 12 HOH HOH . H 6 HOH A 13 613 13 HOH HOH . H 6 HOH A 14 614 14 HOH HOH . H 6 HOH A 15 615 15 HOH HOH . H 6 HOH A 16 616 16 HOH HOH . H 6 HOH A 17 617 17 HOH HOH . H 6 HOH A 18 618 18 HOH HOH . H 6 HOH A 19 619 19 HOH HOH . H 6 HOH A 20 620 20 HOH HOH . H 6 HOH A 21 621 21 HOH HOH . H 6 HOH A 22 622 22 HOH HOH . H 6 HOH A 23 623 23 HOH HOH . H 6 HOH A 24 624 24 HOH HOH . H 6 HOH A 25 625 25 HOH HOH . H 6 HOH A 26 626 26 HOH HOH . H 6 HOH A 27 627 27 HOH HOH . H 6 HOH A 28 628 28 HOH HOH . H 6 HOH A 29 629 29 HOH HOH . H 6 HOH A 30 630 30 HOH HOH . H 6 HOH A 31 631 31 HOH HOH . H 6 HOH A 32 632 32 HOH HOH . H 6 HOH A 33 633 33 HOH HOH . H 6 HOH A 34 634 34 HOH HOH . H 6 HOH A 35 635 35 HOH HOH . H 6 HOH A 36 636 36 HOH HOH . H 6 HOH A 37 637 37 HOH HOH . H 6 HOH A 38 638 38 HOH HOH . H 6 HOH A 39 639 39 HOH HOH . H 6 HOH A 40 640 40 HOH HOH . H 6 HOH A 41 641 41 HOH HOH . H 6 HOH A 42 642 42 HOH HOH . H 6 HOH A 43 643 43 HOH HOH . H 6 HOH A 44 644 44 HOH HOH . H 6 HOH A 45 645 45 HOH HOH . H 6 HOH A 46 646 46 HOH HOH . H 6 HOH A 47 647 47 HOH HOH . H 6 HOH A 48 648 48 HOH HOH . H 6 HOH A 49 649 49 HOH HOH . H 6 HOH A 50 650 50 HOH HOH . H 6 HOH A 51 651 51 HOH HOH . H 6 HOH A 52 652 52 HOH HOH . H 6 HOH A 53 653 53 HOH HOH . H 6 HOH A 54 654 54 HOH HOH . H 6 HOH A 55 655 55 HOH HOH . H 6 HOH A 56 656 56 HOH HOH . H 6 HOH A 57 657 57 HOH HOH . H 6 HOH A 58 658 58 HOH HOH . H 6 HOH A 59 659 59 HOH HOH . H 6 HOH A 60 660 60 HOH HOH . H 6 HOH A 61 661 61 HOH HOH . H 6 HOH A 62 662 62 HOH HOH . H 6 HOH A 63 663 63 HOH HOH . H 6 HOH A 64 664 64 HOH HOH . H 6 HOH A 65 665 65 HOH HOH . H 6 HOH A 66 666 66 HOH HOH . H 6 HOH A 67 667 67 HOH HOH . H 6 HOH A 68 668 68 HOH HOH . H 6 HOH A 69 669 69 HOH HOH . H 6 HOH A 70 670 70 HOH HOH . H 6 HOH A 71 671 71 HOH HOH . H 6 HOH A 72 672 72 HOH HOH . H 6 HOH A 73 673 73 HOH HOH . H 6 HOH A 74 674 74 HOH HOH . H 6 HOH A 75 675 75 HOH HOH . H 6 HOH A 76 676 76 HOH HOH . H 6 HOH A 77 677 77 HOH HOH . H 6 HOH A 78 678 79 HOH HOH . H 6 HOH A 79 679 80 HOH HOH . H 6 HOH A 80 680 81 HOH HOH . H 6 HOH A 81 681 82 HOH HOH . H 6 HOH A 82 682 83 HOH HOH . H 6 HOH A 83 683 84 HOH HOH . H 6 HOH A 84 684 85 HOH HOH . H 6 HOH A 85 685 86 HOH HOH . H 6 HOH A 86 686 87 HOH HOH . H 6 HOH A 87 687 88 HOH HOH . H 6 HOH A 88 688 89 HOH HOH . H 6 HOH A 89 689 90 HOH HOH . H 6 HOH A 90 690 91 HOH HOH . H 6 HOH A 91 691 92 HOH HOH . H 6 HOH A 92 692 93 HOH HOH . H 6 HOH A 93 693 94 HOH HOH . H 6 HOH A 94 694 95 HOH HOH . H 6 HOH A 95 695 96 HOH HOH . H 6 HOH A 96 696 97 HOH HOH . H 6 HOH A 97 697 98 HOH HOH . H 6 HOH A 98 698 99 HOH HOH . H 6 HOH A 99 699 100 HOH HOH . H 6 HOH A 100 700 101 HOH HOH . H 6 HOH A 101 701 102 HOH HOH . H 6 HOH A 102 702 103 HOH HOH . H 6 HOH A 103 703 104 HOH HOH . H 6 HOH A 104 704 106 HOH HOH . H 6 HOH A 105 705 107 HOH HOH . H 6 HOH A 106 706 108 HOH HOH . H 6 HOH A 107 707 109 HOH HOH . H 6 HOH A 108 708 110 HOH HOH . H 6 HOH A 109 709 111 HOH HOH . H 6 HOH A 110 710 112 HOH HOH . H 6 HOH A 111 711 113 HOH HOH . H 6 HOH A 112 712 114 HOH HOH . H 6 HOH A 113 713 115 HOH HOH . H 6 HOH A 114 714 116 HOH HOH . H 6 HOH A 115 715 117 HOH HOH . H 6 HOH A 116 716 118 HOH HOH . H 6 HOH A 117 717 119 HOH HOH . H 6 HOH A 118 718 120 HOH HOH . H 6 HOH A 119 719 121 HOH HOH . H 6 HOH A 120 720 122 HOH HOH . H 6 HOH A 121 721 123 HOH HOH . H 6 HOH A 122 722 124 HOH HOH . H 6 HOH A 123 723 125 HOH HOH . H 6 HOH A 124 724 126 HOH HOH . H 6 HOH A 125 725 127 HOH HOH . H 6 HOH A 126 726 128 HOH HOH . H 6 HOH A 127 727 129 HOH HOH . H 6 HOH A 128 728 130 HOH HOH . H 6 HOH A 129 729 131 HOH HOH . H 6 HOH A 130 730 132 HOH HOH . H 6 HOH A 131 731 133 HOH HOH . H 6 HOH A 132 732 134 HOH HOH . H 6 HOH A 133 733 135 HOH HOH . H 6 HOH A 134 734 136 HOH HOH . H 6 HOH A 135 735 137 HOH HOH . H 6 HOH A 136 736 138 HOH HOH . H 6 HOH A 137 737 139 HOH HOH . H 6 HOH A 138 738 140 HOH HOH . H 6 HOH A 139 739 141 HOH HOH . H 6 HOH A 140 740 142 HOH HOH . H 6 HOH A 141 741 143 HOH HOH . H 6 HOH A 142 742 144 HOH HOH . H 6 HOH A 143 743 145 HOH HOH . H 6 HOH A 144 744 146 HOH HOH . H 6 HOH A 145 745 147 HOH HOH . H 6 HOH A 146 746 148 HOH HOH . H 6 HOH A 147 747 149 HOH HOH . H 6 HOH A 148 748 152 HOH HOH . H 6 HOH A 149 749 153 HOH HOH . H 6 HOH A 150 750 154 HOH HOH . H 6 HOH A 151 751 155 HOH HOH . H 6 HOH A 152 752 156 HOH HOH . H 6 HOH A 153 753 157 HOH HOH . H 6 HOH A 154 754 159 HOH HOH . H 6 HOH A 155 755 160 HOH HOH . H 6 HOH A 156 756 161 HOH HOH . H 6 HOH A 157 757 162 HOH HOH . H 6 HOH A 158 758 163 HOH HOH . H 6 HOH A 159 759 164 HOH HOH . H 6 HOH A 160 760 165 HOH HOH . H 6 HOH A 161 761 166 HOH HOH . H 6 HOH A 162 762 167 HOH HOH . H 6 HOH A 163 763 168 HOH HOH . H 6 HOH A 164 764 169 HOH HOH . H 6 HOH A 165 765 172 HOH HOH . H 6 HOH A 166 766 173 HOH HOH . H 6 HOH A 167 767 174 HOH HOH . H 6 HOH A 168 768 175 HOH HOH . H 6 HOH A 169 769 176 HOH HOH . H 6 HOH A 170 770 177 HOH HOH . H 6 HOH A 171 771 178 HOH HOH . H 6 HOH A 172 772 180 HOH HOH . H 6 HOH A 173 773 181 HOH HOH . H 6 HOH A 174 774 182 HOH HOH . H 6 HOH A 175 775 183 HOH HOH . H 6 HOH A 176 776 184 HOH HOH . H 6 HOH A 177 777 185 HOH HOH . H 6 HOH A 178 778 187 HOH HOH . H 6 HOH A 179 779 188 HOH HOH . H 6 HOH A 180 780 189 HOH HOH . H 6 HOH A 181 781 190 HOH HOH . H 6 HOH A 182 782 191 HOH HOH . H 6 HOH A 183 783 192 HOH HOH . H 6 HOH A 184 784 194 HOH HOH . H 6 HOH A 185 785 195 HOH HOH . H 6 HOH A 186 786 196 HOH HOH . H 6 HOH A 187 787 197 HOH HOH . H 6 HOH A 188 788 198 HOH HOH . H 6 HOH A 189 789 199 HOH HOH . H 6 HOH A 190 790 200 HOH HOH . H 6 HOH A 191 791 201 HOH HOH . H 6 HOH A 192 792 202 HOH HOH . H 6 HOH A 193 793 205 HOH HOH . H 6 HOH A 194 794 206 HOH HOH . H 6 HOH A 195 795 207 HOH HOH . H 6 HOH A 196 796 208 HOH HOH . H 6 HOH A 197 797 209 HOH HOH . H 6 HOH A 198 798 210 HOH HOH . H 6 HOH A 199 799 212 HOH HOH . H 6 HOH A 200 800 213 HOH HOH . H 6 HOH A 201 801 214 HOH HOH . H 6 HOH A 202 802 215 HOH HOH . H 6 HOH A 203 803 216 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BME . . . E 3 0.668 -3.965 20.085 1 29.7 ? C1 BME 504 A 1 HETATM 2 C C2 BME . . . E 3 1.051 -2.715 19.302 1 35.85 ? C2 BME 504 A 1 HETATM 3 O O1 BME . . . E 3 1.854 -4.669 20.471 1 26.35 ? O1 BME 504 A 1 HETATM 4 S S2 BME . . . E 3 1.367 -3.158 17.575 1 45.64 ? S2 BME 504 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 374 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 4 #