data_4N82 # _model_server_result.job_id shcskApjDfPMVfpQ_qtlrg _model_server_result.datetime_utc '2024-10-28 02:40:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4n82 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":201}' # _entry.id 4N82 # _exptl.entry_id 4N82 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.13 _cell.angle_gamma 90 _cell.entry_id 4N82 _cell.length_a 104.726 _cell.length_b 56.612 _cell.length_c 73.387 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4N82 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 4N82 _atom_sites.fract_transf_matrix[1][1] 0.009549 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002761 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017664 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014184 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FMN B 1 201 1 FMN FMN . D 3 SO4 B 1 202 2 SO4 SO4 . E 2 FMN A 1 201 1 FMN FMN . F 3 SO4 A 1 202 1 SO4 SO4 . G 4 HOH B 1 301 2 HOH HOH . G 4 HOH B 2 302 3 HOH HOH . G 4 HOH B 3 303 4 HOH HOH . G 4 HOH B 4 304 7 HOH HOH . G 4 HOH B 5 305 8 HOH HOH . G 4 HOH B 6 306 13 HOH HOH . G 4 HOH B 7 307 14 HOH HOH . G 4 HOH B 8 308 16 HOH HOH . G 4 HOH B 9 309 19 HOH HOH . G 4 HOH B 10 310 21 HOH HOH . G 4 HOH B 11 311 22 HOH HOH . G 4 HOH B 12 312 23 HOH HOH . G 4 HOH B 13 313 27 HOH HOH . G 4 HOH B 14 314 28 HOH HOH . G 4 HOH B 15 315 29 HOH HOH . G 4 HOH B 16 316 32 HOH HOH . G 4 HOH B 17 317 33 HOH HOH . G 4 HOH B 18 318 34 HOH HOH . G 4 HOH B 19 319 36 HOH HOH . G 4 HOH B 20 320 37 HOH HOH . G 4 HOH B 21 321 38 HOH HOH . G 4 HOH B 22 322 44 HOH HOH . G 4 HOH B 23 323 49 HOH HOH . G 4 HOH B 24 324 51 HOH HOH . G 4 HOH B 25 325 54 HOH HOH . G 4 HOH B 26 326 55 HOH HOH . G 4 HOH B 27 327 57 HOH HOH . G 4 HOH B 28 328 59 HOH HOH . G 4 HOH B 29 329 60 HOH HOH . G 4 HOH B 30 330 61 HOH HOH . G 4 HOH B 31 331 64 HOH HOH . G 4 HOH B 32 332 66 HOH HOH . G 4 HOH B 33 333 68 HOH HOH . G 4 HOH B 34 334 71 HOH HOH . G 4 HOH B 35 335 75 HOH HOH . G 4 HOH B 36 336 82 HOH HOH . G 4 HOH B 37 337 83 HOH HOH . G 4 HOH B 38 338 86 HOH HOH . G 4 HOH B 39 339 87 HOH HOH . G 4 HOH B 40 340 88 HOH HOH . G 4 HOH B 41 341 91 HOH HOH . G 4 HOH B 42 342 92 HOH HOH . G 4 HOH B 43 343 94 HOH HOH . G 4 HOH B 44 344 95 HOH HOH . G 4 HOH B 45 345 97 HOH HOH . G 4 HOH B 46 346 98 HOH HOH . G 4 HOH B 47 347 99 HOH HOH . G 4 HOH B 48 348 100 HOH HOH . G 4 HOH B 49 349 102 HOH HOH . G 4 HOH B 50 350 103 HOH HOH . G 4 HOH B 51 351 104 HOH HOH . G 4 HOH B 52 352 105 HOH HOH . G 4 HOH B 53 353 108 HOH HOH . G 4 HOH B 54 354 109 HOH HOH . G 4 HOH B 55 355 111 HOH HOH . G 4 HOH B 56 356 113 HOH HOH . G 4 HOH B 57 357 116 HOH HOH . G 4 HOH B 58 358 117 HOH HOH . G 4 HOH B 59 359 118 HOH HOH . G 4 HOH B 60 360 121 HOH HOH . G 4 HOH B 61 361 123 HOH HOH . G 4 HOH B 62 362 130 HOH HOH . G 4 HOH B 63 363 131 HOH HOH . G 4 HOH B 64 364 135 HOH HOH . G 4 HOH B 65 365 137 HOH HOH . G 4 HOH B 66 366 140 HOH HOH . G 4 HOH B 67 367 142 HOH HOH . G 4 HOH B 68 368 144 HOH HOH . G 4 HOH B 69 369 145 HOH HOH . G 4 HOH B 70 370 146 HOH HOH . G 4 HOH B 71 371 147 HOH HOH . G 4 HOH B 72 372 149 HOH HOH . G 4 HOH B 73 373 158 HOH HOH . G 4 HOH B 74 374 159 HOH HOH . G 4 HOH B 75 375 162 HOH HOH . G 4 HOH B 76 376 164 HOH HOH . G 4 HOH B 77 377 167 HOH HOH . G 4 HOH B 78 378 169 HOH HOH . G 4 HOH B 79 379 174 HOH HOH . G 4 HOH B 80 380 177 HOH HOH . G 4 HOH B 81 381 181 HOH HOH . G 4 HOH B 82 382 183 HOH HOH . G 4 HOH B 83 383 186 HOH HOH . G 4 HOH B 84 384 187 HOH HOH . G 4 HOH B 85 385 188 HOH HOH . G 4 HOH B 86 386 189 HOH HOH . G 4 HOH B 87 387 191 HOH HOH . G 4 HOH B 88 388 194 HOH HOH . G 4 HOH B 89 389 196 HOH HOH . G 4 HOH B 90 390 197 HOH HOH . G 4 HOH B 91 391 200 HOH HOH . G 4 HOH B 92 392 205 HOH HOH . G 4 HOH B 93 393 207 HOH HOH . G 4 HOH B 94 394 208 HOH HOH . G 4 HOH B 95 395 209 HOH HOH . G 4 HOH B 96 396 211 HOH HOH . G 4 HOH B 97 397 216 HOH HOH . G 4 HOH B 98 398 219 HOH HOH . G 4 HOH B 99 399 221 HOH HOH . G 4 HOH B 100 400 222 HOH HOH . G 4 HOH B 101 401 225 HOH HOH . G 4 HOH B 102 402 226 HOH HOH . G 4 HOH B 103 403 227 HOH HOH . G 4 HOH B 104 404 228 HOH HOH . G 4 HOH B 105 405 230 HOH HOH . G 4 HOH B 106 406 232 HOH HOH . G 4 HOH B 107 407 233 HOH HOH . H 4 HOH A 1 301 1 HOH HOH . H 4 HOH A 2 302 6 HOH HOH . H 4 HOH A 3 303 9 HOH HOH . H 4 HOH A 4 304 11 HOH HOH . H 4 HOH A 5 305 12 HOH HOH . H 4 HOH A 6 306 15 HOH HOH . H 4 HOH A 7 307 17 HOH HOH . H 4 HOH A 8 308 18 HOH HOH . H 4 HOH A 9 309 20 HOH HOH . H 4 HOH A 10 310 24 HOH HOH . H 4 HOH A 11 311 25 HOH HOH . H 4 HOH A 12 312 26 HOH HOH . H 4 HOH A 13 313 30 HOH HOH . H 4 HOH A 14 314 31 HOH HOH . H 4 HOH A 15 315 35 HOH HOH . H 4 HOH A 16 316 39 HOH HOH . H 4 HOH A 17 317 40 HOH HOH . H 4 HOH A 18 318 41 HOH HOH . H 4 HOH A 19 319 45 HOH HOH . H 4 HOH A 20 320 46 HOH HOH . H 4 HOH A 21 321 47 HOH HOH . H 4 HOH A 22 322 48 HOH HOH . H 4 HOH A 23 323 50 HOH HOH . H 4 HOH A 24 324 52 HOH HOH . H 4 HOH A 25 325 53 HOH HOH . H 4 HOH A 26 326 56 HOH HOH . H 4 HOH A 27 327 58 HOH HOH . H 4 HOH A 28 328 62 HOH HOH . H 4 HOH A 29 329 63 HOH HOH . H 4 HOH A 30 330 67 HOH HOH . H 4 HOH A 31 331 69 HOH HOH . H 4 HOH A 32 332 70 HOH HOH . H 4 HOH A 33 333 72 HOH HOH . H 4 HOH A 34 334 73 HOH HOH . H 4 HOH A 35 335 76 HOH HOH . H 4 HOH A 36 336 77 HOH HOH . H 4 HOH A 37 337 78 HOH HOH . H 4 HOH A 38 338 79 HOH HOH . H 4 HOH A 39 339 80 HOH HOH . H 4 HOH A 40 340 81 HOH HOH . H 4 HOH A 41 341 84 HOH HOH . H 4 HOH A 42 342 85 HOH HOH . H 4 HOH A 43 343 89 HOH HOH . H 4 HOH A 44 344 90 HOH HOH . H 4 HOH A 45 345 93 HOH HOH . H 4 HOH A 46 346 96 HOH HOH . H 4 HOH A 47 347 101 HOH HOH . H 4 HOH A 48 348 106 HOH HOH . H 4 HOH A 49 349 107 HOH HOH . H 4 HOH A 50 350 110 HOH HOH . H 4 HOH A 51 351 112 HOH HOH . H 4 HOH A 52 352 115 HOH HOH . H 4 HOH A 53 353 119 HOH HOH . H 4 HOH A 54 354 120 HOH HOH . H 4 HOH A 55 355 122 HOH HOH . H 4 HOH A 56 356 124 HOH HOH . H 4 HOH A 57 357 125 HOH HOH . H 4 HOH A 58 358 126 HOH HOH . H 4 HOH A 59 359 127 HOH HOH . H 4 HOH A 60 360 128 HOH HOH . H 4 HOH A 61 361 129 HOH HOH . H 4 HOH A 62 362 132 HOH HOH . H 4 HOH A 63 363 133 HOH HOH . H 4 HOH A 64 364 136 HOH HOH . H 4 HOH A 65 365 138 HOH HOH . H 4 HOH A 66 366 139 HOH HOH . H 4 HOH A 67 367 143 HOH HOH . H 4 HOH A 68 368 148 HOH HOH . H 4 HOH A 69 369 150 HOH HOH . H 4 HOH A 70 370 151 HOH HOH . H 4 HOH A 71 371 152 HOH HOH . H 4 HOH A 72 372 154 HOH HOH . H 4 HOH A 73 373 155 HOH HOH . H 4 HOH A 74 374 157 HOH HOH . H 4 HOH A 75 375 160 HOH HOH . H 4 HOH A 76 376 161 HOH HOH . H 4 HOH A 77 377 163 HOH HOH . H 4 HOH A 78 378 166 HOH HOH . H 4 HOH A 79 379 172 HOH HOH . H 4 HOH A 80 380 175 HOH HOH . H 4 HOH A 81 381 179 HOH HOH . H 4 HOH A 82 382 184 HOH HOH . H 4 HOH A 83 383 185 HOH HOH . H 4 HOH A 84 384 192 HOH HOH . H 4 HOH A 85 385 195 HOH HOH . H 4 HOH A 86 386 201 HOH HOH . H 4 HOH A 87 387 203 HOH HOH . H 4 HOH A 88 388 204 HOH HOH . H 4 HOH A 89 389 213 HOH HOH . H 4 HOH A 90 390 214 HOH HOH . H 4 HOH A 91 391 215 HOH HOH . H 4 HOH A 92 392 217 HOH HOH . H 4 HOH A 93 393 218 HOH HOH . H 4 HOH A 94 394 224 HOH HOH . H 4 HOH A 95 395 231 HOH HOH . H 4 HOH A 96 396 234 HOH HOH . H 4 HOH A 97 397 235 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . E 2 -20.889 32.601 15.799 1 19.4 ? N1 FMN 201 A 1 HETATM 2 C C2 FMN . . . E 2 -20.389 33.723 15.166 1 19.98 ? C2 FMN 201 A 1 HETATM 3 O O2 FMN . . . E 2 -20.977 34.17 14.183 1 20.17 ? O2 FMN 201 A 1 HETATM 4 N N3 FMN . . . E 2 -19.238 34.341 15.644 1 19.79 ? N3 FMN 201 A 1 HETATM 5 C C4 FMN . . . E 2 -18.575 33.829 16.752 1 20.04 ? C4 FMN 201 A 1 HETATM 6 O O4 FMN . . . E 2 -17.551 34.387 17.172 1 20.31 ? O4 FMN 201 A 1 HETATM 7 C C4A FMN . . . E 2 -19.069 32.691 17.388 1 19.42 ? C4A FMN 201 A 1 HETATM 8 N N5 FMN . . . E 2 -18.423 32.168 18.5 1 19.3 ? N5 FMN 201 A 1 HETATM 9 C C5A FMN . . . E 2 -18.922 31.038 19.127 1 19.31 ? C5A FMN 201 A 1 HETATM 10 C C6 FMN . . . E 2 -18.267 30.51 20.245 1 19.44 ? C6 FMN 201 A 1 HETATM 11 C C7 FMN . . . E 2 -18.774 29.375 20.892 1 19.46 ? C7 FMN 201 A 1 HETATM 12 C C7M FMN . . . E 2 -18.038 28.843 22.093 1 19.33 ? C7M FMN 201 A 1 HETATM 13 C C8 FMN . . . E 2 -19.941 28.767 20.414 1 19.16 ? C8 FMN 201 A 1 HETATM 14 C C8M FMN . . . E 2 -20.544 27.542 21.056 1 18.98 ? C8M FMN 201 A 1 HETATM 15 C C9 FMN . . . E 2 -20.582 29.298 19.297 1 19.24 ? C9 FMN 201 A 1 HETATM 16 C C9A FMN . . . E 2 -20.086 30.431 18.647 1 19.19 ? C9A FMN 201 A 1 HETATM 17 N N10 FMN . . . E 2 -20.734 30.956 17.53 1 19.25 ? N10 FMN 201 A 1 HETATM 18 C C10 FMN . . . E 2 -20.231 32.082 16.906 1 19.33 ? C10 FMN 201 A 1 HETATM 19 C C1' FMN . . . E 2 -21.99 30.34 16.976 1 18.57 ? C1' FMN 201 A 1 HETATM 20 C C2' FMN . . . E 2 -21.713 29.146 16.058 1 17.92 ? C2' FMN 201 A 1 HETATM 21 O O2' FMN . . . E 2 -20.788 29.475 15.038 1 16.87 ? O2' FMN 201 A 1 HETATM 22 C C3' FMN . . . E 2 -23.02 28.65 15.425 1 18.24 ? C3' FMN 201 A 1 HETATM 23 O O3' FMN . . . E 2 -23.833 28.078 16.425 1 18.16 ? O3' FMN 201 A 1 HETATM 24 C C4' FMN . . . E 2 -22.817 27.641 14.296 1 18.32 ? C4' FMN 201 A 1 HETATM 25 O O4' FMN . . . E 2 -24.054 27.394 13.652 1 18.54 ? O4' FMN 201 A 1 HETATM 26 C C5' FMN . . . E 2 -22.229 26.327 14.807 1 18.49 ? C5' FMN 201 A 1 HETATM 27 O O5' FMN . . . E 2 -22.243 25.377 13.77 1 18.4 ? O5' FMN 201 A 1 HETATM 28 P P FMN . . . E 2 -22.009 23.816 14.074 1 19.14 ? P FMN 201 A 1 HETATM 29 O O1P FMN . . . E 2 -23.182 23.299 14.887 1 19.18 ? O1P FMN 201 A 1 HETATM 30 O O2P FMN . . . E 2 -20.719 23.598 14.82 1 19.46 ? O2P FMN 201 A 1 HETATM 31 O O3P FMN . . . E 2 -21.967 23.084 12.764 1 19.3 ? O3P FMN 201 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #