data_4N86 # _model_server_result.job_id ayWq8wvKW-2YOJnx8HoKYw _model_server_result.datetime_utc '2024-11-18 18:35:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4n86 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 4N86 # _exptl.entry_id 4N86 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 324.37 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-[(3R)-8,8-dimethyl-3,4-dihydro-2H,8H-pyrano[2,3-f]chromen-3-yl]benzene-1,3-diol _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4N86 _cell.length_a 42.829 _cell.length_b 84.582 _cell.length_c 65.265 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4N86 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_455 -x-1,-y,z -1 0 0 0 -1 0 0 0 1 -42.829 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 98 A GLU 66 1_555 D CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? metalc ? metalc2 A OD1 ASP 131 A ASP 99 1_555 D CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.613 ? metalc ? metalc3 A O ASP 131 A ASP 99 1_555 D CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.728 ? # _chem_comp.formula 'C20 H20 O4' _chem_comp.formula_weight 324.37 _chem_comp.id GBJ _chem_comp.mon_nstd_flag . _chem_comp.name 4-[(3R)-8,8-dimethyl-3,4-dihydro-2H,8H-pyrano[2,3-f]chromen-3-yl]benzene-1,3-diol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms glabridin # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C20 C2 GBJ sing 83 n n C1 C2 GBJ sing 84 n n C2 C3 GBJ sing 85 n n C2 O4 GBJ sing 86 n n C3 C4 GBJ doub 87 n n O4 C6 GBJ sing 88 n n C6 C7 GBJ sing 89 n y C6 C5 GBJ doub 90 n y C4 C5 GBJ sing 91 n n C7 C8 GBJ doub 92 n y C5 C10 GBJ sing 93 n y C8 C9 GBJ sing 94 n y C10 C9 GBJ doub 95 n y C10 O1 GBJ sing 96 n n C9 C13 GBJ sing 97 n n O1 C11 GBJ sing 98 n n C11 C12 GBJ sing 99 n n C13 C12 GBJ sing 100 n n C12 C14 GBJ sing 101 n n C14 C15 GBJ sing 102 n y C14 C19 GBJ doub 103 n y O2 C19 GBJ sing 104 n n C15 C16 GBJ doub 105 n y C19 C18 GBJ sing 106 n y C16 C17 GBJ sing 107 n y C18 C17 GBJ doub 108 n y C17 O3 GBJ sing 109 n n C1 H1 GBJ sing 110 n n C1 H2 GBJ sing 111 n n C1 H3 GBJ sing 112 n n C3 H4 GBJ sing 113 n n C4 H6 GBJ sing 114 n n C7 H8 GBJ sing 115 n n C8 H9 GBJ sing 116 n n C11 H10 GBJ sing 117 n n C11 H11 GBJ sing 118 n n C12 H12 GBJ sing 119 n n C13 H13 GBJ sing 120 n n C13 H14 GBJ sing 121 n n C15 H15 GBJ sing 122 n n C16 H16 GBJ sing 123 n n C18 H17 GBJ sing 124 n n O2 H18 GBJ sing 125 n n O3 H19 GBJ sing 126 n n C20 H20 GBJ sing 127 n n C20 H21 GBJ sing 128 n n C20 H22 GBJ sing 129 n n # _atom_sites.entry_id 4N86 _atom_sites.fract_transf_matrix[1][1] 0.023349 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011823 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015322 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GBJ A 1 201 999 GBJ GLA . D 3 CA A 1 202 1 CA CA . E 2 GBJ B 1 201 999 GBJ GLA . F 4 HOH A 1 301 1 HOH HOH . F 4 HOH A 2 302 2 HOH HOH . F 4 HOH A 3 303 3 HOH HOH . F 4 HOH A 4 304 5 HOH HOH . F 4 HOH A 5 305 11 HOH HOH . F 4 HOH A 6 306 12 HOH HOH . F 4 HOH A 7 307 15 HOH HOH . F 4 HOH A 8 308 16 HOH HOH . F 4 HOH A 9 309 17 HOH HOH . F 4 HOH A 10 310 18 HOH HOH . F 4 HOH A 11 311 19 HOH HOH . F 4 HOH A 12 312 22 HOH HOH . F 4 HOH A 13 313 23 HOH HOH . F 4 HOH A 14 314 27 HOH HOH . F 4 HOH A 15 315 30 HOH HOH . F 4 HOH A 16 316 31 HOH HOH . F 4 HOH A 17 317 32 HOH HOH . F 4 HOH A 18 318 33 HOH HOH . F 4 HOH A 19 319 35 HOH HOH . F 4 HOH A 20 320 37 HOH HOH . F 4 HOH A 21 321 40 HOH HOH . F 4 HOH A 22 322 41 HOH HOH . F 4 HOH A 23 323 45 HOH HOH . F 4 HOH A 24 324 47 HOH HOH . F 4 HOH A 25 325 50 HOH HOH . F 4 HOH A 26 326 51 HOH HOH . F 4 HOH A 27 327 52 HOH HOH . F 4 HOH A 28 328 53 HOH HOH . F 4 HOH A 29 329 54 HOH HOH . F 4 HOH A 30 330 56 HOH HOH . F 4 HOH A 31 331 62 HOH HOH . F 4 HOH A 32 332 63 HOH HOH . F 4 HOH A 33 333 64 HOH HOH . F 4 HOH A 34 334 65 HOH HOH . F 4 HOH A 35 335 68 HOH HOH . F 4 HOH A 36 336 69 HOH HOH . F 4 HOH A 37 337 70 HOH HOH . F 4 HOH A 38 338 72 HOH HOH . F 4 HOH A 39 339 73 HOH HOH . F 4 HOH A 40 340 74 HOH HOH . F 4 HOH A 41 341 75 HOH HOH . F 4 HOH A 42 342 76 HOH HOH . G 4 HOH B 1 301 4 HOH HOH . G 4 HOH B 2 302 6 HOH HOH . G 4 HOH B 3 303 7 HOH HOH . G 4 HOH B 4 304 8 HOH HOH . G 4 HOH B 5 305 9 HOH HOH . G 4 HOH B 6 306 10 HOH HOH . G 4 HOH B 7 307 13 HOH HOH . G 4 HOH B 8 308 14 HOH HOH . G 4 HOH B 9 309 20 HOH HOH . G 4 HOH B 10 310 21 HOH HOH . G 4 HOH B 11 311 24 HOH HOH . G 4 HOH B 12 312 25 HOH HOH . G 4 HOH B 13 313 26 HOH HOH . G 4 HOH B 14 314 28 HOH HOH . G 4 HOH B 15 315 29 HOH HOH . G 4 HOH B 16 316 34 HOH HOH . G 4 HOH B 17 317 36 HOH HOH . G 4 HOH B 18 318 38 HOH HOH . G 4 HOH B 19 319 39 HOH HOH . G 4 HOH B 20 320 42 HOH HOH . G 4 HOH B 21 321 43 HOH HOH . G 4 HOH B 22 322 44 HOH HOH . G 4 HOH B 23 323 46 HOH HOH . G 4 HOH B 24 324 48 HOH HOH . G 4 HOH B 25 325 49 HOH HOH . G 4 HOH B 26 326 55 HOH HOH . G 4 HOH B 27 327 57 HOH HOH . G 4 HOH B 28 328 58 HOH HOH . G 4 HOH B 29 329 59 HOH HOH . G 4 HOH B 30 330 60 HOH HOH . G 4 HOH B 31 331 61 HOH HOH . G 4 HOH B 32 332 66 HOH HOH . G 4 HOH B 33 333 67 HOH HOH . G 4 HOH B 34 334 71 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GBJ . . . C 2 -20.306 -0.716 -11.103 0.5 33.44 ? C1 GBJ 201 A 1 HETATM 2 C C2 GBJ . . . C 2 -21.407 0.097 -10.499 0.5 34.68 ? C2 GBJ 201 A 1 HETATM 3 C C3 GBJ . . . C 2 -20.869 1.29 -9.796 0.5 33.52 ? C3 GBJ 201 A 1 HETATM 4 C C4 GBJ . . . C 2 -20.454 1.109 -8.369 0.5 34.92 ? C4 GBJ 201 A 1 HETATM 5 C C5 GBJ . . . C 2 -21.33 0.094 -7.642 0.5 33.38 ? C5 GBJ 201 A 1 HETATM 6 C C6 GBJ . . . C 2 -22.172 -0.752 -8.385 0.5 35.25 ? C6 GBJ 201 A 1 HETATM 7 C C7 GBJ . . . C 2 -23.004 -1.713 -7.69 0.5 31.75 ? C7 GBJ 201 A 1 HETATM 8 C C8 GBJ . . . C 2 -22.967 -1.803 -6.285 0.5 34.65 ? C8 GBJ 201 A 1 HETATM 9 C C9 GBJ . . . C 2 -22.104 -0.935 -5.53 0.5 37.17 ? C9 GBJ 201 A 1 HETATM 10 C C10 GBJ . . . C 2 -21.286 0.009 -6.19 0.5 35.57 ? C10 GBJ 201 A 1 HETATM 11 O O1 GBJ . . . C 2 -20.434 0.863 -5.462 0.5 37.22 ? O1 GBJ 201 A 1 HETATM 12 C C11 GBJ . . . C 2 -20.83 1.057 -4.165 0.5 38.25 ? C11 GBJ 201 A 1 HETATM 13 C C12 GBJ . . . C 2 -20.959 -0.24 -3.45 0.5 39.99 ? C12 GBJ 201 A 1 HETATM 14 C C13 GBJ . . . C 2 -22.079 -1.05 -4.014 0.5 38.23 ? C13 GBJ 201 A 1 HETATM 15 C C14 GBJ . . . C 2 -21.172 -0.097 -1.957 0.5 41.54 ? C14 GBJ 201 A 1 HETATM 16 C C15 GBJ . . . C 2 -22.32 0.488 -1.432 0.5 42.94 ? C15 GBJ 201 A 1 HETATM 17 C C16 GBJ . . . C 2 -22.479 0.593 -0.057 0.5 44.07 ? C16 GBJ 201 A 1 HETATM 18 C C17 GBJ . . . C 2 -21.501 0.11 0.799 0.5 45.68 ? C17 GBJ 201 A 1 HETATM 19 C C18 GBJ . . . C 2 -20.358 -0.48 0.279 0.5 44.14 ? C18 GBJ 201 A 1 HETATM 20 C C19 GBJ . . . C 2 -20.194 -0.585 -1.095 0.5 43.33 ? C19 GBJ 201 A 1 HETATM 21 O O2 GBJ . . . C 2 -19.056 -1.171 -1.601 0.5 40.5 ? O2 GBJ 201 A 1 HETATM 22 O O3 GBJ . . . C 2 -21.665 0.217 2.164 0.5 50.56 ? O3 GBJ 201 A 1 HETATM 23 O O4 GBJ . . . C 2 -22.255 -0.699 -9.781 0.5 34.5 ? O4 GBJ 201 A 1 HETATM 24 C C20 GBJ . . . C 2 -22.208 0.622 -11.646 0.5 33.59 ? C20 GBJ 201 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 24 #