data_4N86
#
_model_server_result.job_id            Ucbcrf5oUoc2XsEgmxIUZg 
_model_server_result.datetime_utc      '2024-11-18 18:38:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4n86 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":201}' 
#
_entry.id    4N86 
#
_exptl.entry_id    4N86 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              324.37 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            4-[(3R)-8,8-dimethyl-3,4-dihydro-2H,8H-pyrano[2,3-f]chromen-3-yl]benzene-1,3-diol 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4N86 
_cell.length_a            42.829 
_cell.length_b            84.582 
_cell.length_c            65.265 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4N86 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_455 -x-1,-y,z -1 0 0 0 -1 0 0 0 1 -42.829 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE1 GLU 98 A GLU 66 1_555 D CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? 
metalc ? metalc2 A OD1 ASP 131 A ASP 99 1_555 D CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.613 ? 
metalc ? metalc3 A O ASP 131 A ASP 99 1_555 D CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.728 ? 
#
_chem_comp.formula           'C20 H20 O4' 
_chem_comp.formula_weight    324.37 
_chem_comp.id                GBJ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              4-[(3R)-8,8-dimethyl-3,4-dihydro-2H,8H-pyrano[2,3-f]chromen-3-yl]benzene-1,3-diol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     glabridin 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C20 C2 GBJ sing 83 n n 
C1 C2 GBJ sing 84 n n 
C2 C3 GBJ sing 85 n n 
C2 O4 GBJ sing 86 n n 
C3 C4 GBJ doub 87 n n 
O4 C6 GBJ sing 88 n n 
C6 C7 GBJ sing 89 n y 
C6 C5 GBJ doub 90 n y 
C4 C5 GBJ sing 91 n n 
C7 C8 GBJ doub 92 n y 
C5 C10 GBJ sing 93 n y 
C8 C9 GBJ sing 94 n y 
C10 C9 GBJ doub 95 n y 
C10 O1 GBJ sing 96 n n 
C9 C13 GBJ sing 97 n n 
O1 C11 GBJ sing 98 n n 
C11 C12 GBJ sing 99 n n 
C13 C12 GBJ sing 100 n n 
C12 C14 GBJ sing 101 n n 
C14 C15 GBJ sing 102 n y 
C14 C19 GBJ doub 103 n y 
O2 C19 GBJ sing 104 n n 
C15 C16 GBJ doub 105 n y 
C19 C18 GBJ sing 106 n y 
C16 C17 GBJ sing 107 n y 
C18 C17 GBJ doub 108 n y 
C17 O3 GBJ sing 109 n n 
C1 H1 GBJ sing 110 n n 
C1 H2 GBJ sing 111 n n 
C1 H3 GBJ sing 112 n n 
C3 H4 GBJ sing 113 n n 
C4 H6 GBJ sing 114 n n 
C7 H8 GBJ sing 115 n n 
C8 H9 GBJ sing 116 n n 
C11 H10 GBJ sing 117 n n 
C11 H11 GBJ sing 118 n n 
C12 H12 GBJ sing 119 n n 
C13 H13 GBJ sing 120 n n 
C13 H14 GBJ sing 121 n n 
C15 H15 GBJ sing 122 n n 
C16 H16 GBJ sing 123 n n 
C18 H17 GBJ sing 124 n n 
O2 H18 GBJ sing 125 n n 
O3 H19 GBJ sing 126 n n 
C20 H20 GBJ sing 127 n n 
C20 H21 GBJ sing 128 n n 
C20 H22 GBJ sing 129 n n 
#
_atom_sites.entry_id                     4N86 
_atom_sites.fract_transf_matrix[1][1]    0.023349 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011823 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015322 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GBJ A 1 201 999 GBJ GLA . 
D 3 CA A 1 202 1 CA CA . 
E 2 GBJ B 1 201 999 GBJ GLA . 
F 4 HOH A 1 301 1 HOH HOH . 
F 4 HOH A 2 302 2 HOH HOH . 
F 4 HOH A 3 303 3 HOH HOH . 
F 4 HOH A 4 304 5 HOH HOH . 
F 4 HOH A 5 305 11 HOH HOH . 
F 4 HOH A 6 306 12 HOH HOH . 
F 4 HOH A 7 307 15 HOH HOH . 
F 4 HOH A 8 308 16 HOH HOH . 
F 4 HOH A 9 309 17 HOH HOH . 
F 4 HOH A 10 310 18 HOH HOH . 
F 4 HOH A 11 311 19 HOH HOH . 
F 4 HOH A 12 312 22 HOH HOH . 
F 4 HOH A 13 313 23 HOH HOH . 
F 4 HOH A 14 314 27 HOH HOH . 
F 4 HOH A 15 315 30 HOH HOH . 
F 4 HOH A 16 316 31 HOH HOH . 
F 4 HOH A 17 317 32 HOH HOH . 
F 4 HOH A 18 318 33 HOH HOH . 
F 4 HOH A 19 319 35 HOH HOH . 
F 4 HOH A 20 320 37 HOH HOH . 
F 4 HOH A 21 321 40 HOH HOH . 
F 4 HOH A 22 322 41 HOH HOH . 
F 4 HOH A 23 323 45 HOH HOH . 
F 4 HOH A 24 324 47 HOH HOH . 
F 4 HOH A 25 325 50 HOH HOH . 
F 4 HOH A 26 326 51 HOH HOH . 
F 4 HOH A 27 327 52 HOH HOH . 
F 4 HOH A 28 328 53 HOH HOH . 
F 4 HOH A 29 329 54 HOH HOH . 
F 4 HOH A 30 330 56 HOH HOH . 
F 4 HOH A 31 331 62 HOH HOH . 
F 4 HOH A 32 332 63 HOH HOH . 
F 4 HOH A 33 333 64 HOH HOH . 
F 4 HOH A 34 334 65 HOH HOH . 
F 4 HOH A 35 335 68 HOH HOH . 
F 4 HOH A 36 336 69 HOH HOH . 
F 4 HOH A 37 337 70 HOH HOH . 
F 4 HOH A 38 338 72 HOH HOH . 
F 4 HOH A 39 339 73 HOH HOH . 
F 4 HOH A 40 340 74 HOH HOH . 
F 4 HOH A 41 341 75 HOH HOH . 
F 4 HOH A 42 342 76 HOH HOH . 
G 4 HOH B 1 301 4 HOH HOH . 
G 4 HOH B 2 302 6 HOH HOH . 
G 4 HOH B 3 303 7 HOH HOH . 
G 4 HOH B 4 304 8 HOH HOH . 
G 4 HOH B 5 305 9 HOH HOH . 
G 4 HOH B 6 306 10 HOH HOH . 
G 4 HOH B 7 307 13 HOH HOH . 
G 4 HOH B 8 308 14 HOH HOH . 
G 4 HOH B 9 309 20 HOH HOH . 
G 4 HOH B 10 310 21 HOH HOH . 
G 4 HOH B 11 311 24 HOH HOH . 
G 4 HOH B 12 312 25 HOH HOH . 
G 4 HOH B 13 313 26 HOH HOH . 
G 4 HOH B 14 314 28 HOH HOH . 
G 4 HOH B 15 315 29 HOH HOH . 
G 4 HOH B 16 316 34 HOH HOH . 
G 4 HOH B 17 317 36 HOH HOH . 
G 4 HOH B 18 318 38 HOH HOH . 
G 4 HOH B 19 319 39 HOH HOH . 
G 4 HOH B 20 320 42 HOH HOH . 
G 4 HOH B 21 321 43 HOH HOH . 
G 4 HOH B 22 322 44 HOH HOH . 
G 4 HOH B 23 323 46 HOH HOH . 
G 4 HOH B 24 324 48 HOH HOH . 
G 4 HOH B 25 325 49 HOH HOH . 
G 4 HOH B 26 326 55 HOH HOH . 
G 4 HOH B 27 327 57 HOH HOH . 
G 4 HOH B 28 328 58 HOH HOH . 
G 4 HOH B 29 329 59 HOH HOH . 
G 4 HOH B 30 330 60 HOH HOH . 
G 4 HOH B 31 331 61 HOH HOH . 
G 4 HOH B 32 332 66 HOH HOH . 
G 4 HOH B 33 333 67 HOH HOH . 
G 4 HOH B 34 334 71 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GBJ . . . E 2 -20.431 0.892 -21.458 0.5 34.53 ? C1 GBJ 201 B 1 
HETATM 2 C C2 GBJ . . . E 2 -21.483 -0.106 -21.836 0.5 37.07 ? C2 GBJ 201 B 1 
HETATM 3 C C3 GBJ . . . E 2 -20.877 -1.282 -22.505 0.5 35.23 ? C3 GBJ 201 B 1 
HETATM 4 C C4 GBJ . . . E 2 -20.519 -1.098 -23.948 0.5 34.7 ? C4 GBJ 201 B 1 
HETATM 5 C C5 GBJ . . . E 2 -21.443 -0.115 -24.665 0.5 35.23 ? C5 GBJ 201 B 1 
HETATM 6 C C6 GBJ . . . E 2 -22.382 0.625 -23.926 0.5 34.88 ? C6 GBJ 201 B 1 
HETATM 7 C C7 GBJ . . . E 2 -23.25 1.553 -24.625 0.5 33.23 ? C7 GBJ 201 B 1 
HETATM 8 C C8 GBJ . . . E 2 -23.15 1.713 -26.024 0.5 35.27 ? C8 GBJ 201 B 1 
HETATM 9 C C9 GBJ . . . E 2 -22.184 0.952 -26.775 0.5 38.44 ? C9 GBJ 201 B 1 
HETATM 10 C C10 GBJ . . . E 2 -21.335 0.043 -26.106 0.5 35.86 ? C10 GBJ 201 B 1 
HETATM 11 O O1 GBJ . . . E 2 -20.382 -0.712 -26.813 0.5 38.79 ? O1 GBJ 201 B 1 
HETATM 12 C C11 GBJ . . . E 2 -20.707 -0.912 -28.127 0.5 38.15 ? C11 GBJ 201 B 1 
HETATM 13 C C12 GBJ . . . E 2 -20.918 0.375 -28.836 0.5 39.9 ? C12 GBJ 201 B 1 
HETATM 14 C C13 GBJ . . . E 2 -22.083 1.132 -28.284 0.5 38.17 ? C13 GBJ 201 B 1 
HETATM 15 C C14 GBJ . . . E 2 -21.136 0.174 -30.317 0.5 43.43 ? C14 GBJ 201 B 1 
HETATM 16 C C15 GBJ . . . E 2 -22.257 -0.491 -30.802 0.5 44.43 ? C15 GBJ 201 B 1 
HETATM 17 C C16 GBJ . . . E 2 -22.428 -0.652 -32.17 0.5 46.53 ? C16 GBJ 201 B 1 
HETATM 18 C C17 GBJ . . . E 2 -21.486 -0.149 -33.053 0.5 47.23 ? C17 GBJ 201 B 1 
HETATM 19 C C18 GBJ . . . E 2 -20.368 0.517 -32.573 0.5 46.49 ? C18 GBJ 201 B 1 
HETATM 20 C C19 GBJ . . . E 2 -20.193 0.679 -31.206 0.5 45.08 ? C19 GBJ 201 B 1 
HETATM 21 O O2 GBJ . . . E 2 -19.084 1.342 -30.73 0.5 42.71 ? O2 GBJ 201 B 1 
HETATM 22 O O3 GBJ . . . E 2 -21.666 -0.315 -34.41 0.5 50.88 ? O3 GBJ 201 B 1 
HETATM 23 O O4 GBJ . . . E 2 -22.503 0.48 -22.536 0.5 36.43 ? O4 GBJ 201 B 1 
HETATM 24 C C20 GBJ . . . E 2 -22.061 -0.601 -20.549 0.5 34.92 ? C20 GBJ 201 B 1 
#
_model_server_stats.io_time_ms              28 
_model_server_stats.parse_time_ms           29 
_model_server_stats.create_model_time_ms    31 
_model_server_stats.query_time_ms           1417 
_model_server_stats.encode_time_ms          21 
_model_server_stats.element_count           24 
#