data_4N87 # _model_server_result.job_id 8TtWmpCuPRD2xfBGCns0bQ _model_server_result.datetime_utc '2024-11-18 18:39:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4n87 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 4N87 # _exptl.entry_id 4N87 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 324.37 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-[(3R)-8,8-dimethyl-3,4-dihydro-2H,8H-pyrano[2,3-f]chromen-3-yl]benzene-1,3-diol _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4N87 _cell.length_a 43.026 _cell.length_b 84.948 _cell.length_c 64.451 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4N87 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_455 -x-1,-y,z -1 0 0 0 -1 0 0 0 1 -43.026 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C20 H20 O4' _chem_comp.formula_weight 324.37 _chem_comp.id GBJ _chem_comp.mon_nstd_flag . _chem_comp.name 4-[(3R)-8,8-dimethyl-3,4-dihydro-2H,8H-pyrano[2,3-f]chromen-3-yl]benzene-1,3-diol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms glabridin # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C20 C2 GBJ sing 83 n n C1 C2 GBJ sing 84 n n C2 C3 GBJ sing 85 n n C2 O4 GBJ sing 86 n n C3 C4 GBJ doub 87 n n O4 C6 GBJ sing 88 n n C6 C7 GBJ sing 89 n y C6 C5 GBJ doub 90 n y C4 C5 GBJ sing 91 n n C7 C8 GBJ doub 92 n y C5 C10 GBJ sing 93 n y C8 C9 GBJ sing 94 n y C10 C9 GBJ doub 95 n y C10 O1 GBJ sing 96 n n C9 C13 GBJ sing 97 n n O1 C11 GBJ sing 98 n n C11 C12 GBJ sing 99 n n C13 C12 GBJ sing 100 n n C12 C14 GBJ sing 101 n n C14 C15 GBJ sing 102 n y C14 C19 GBJ doub 103 n y O2 C19 GBJ sing 104 n n C15 C16 GBJ doub 105 n y C19 C18 GBJ sing 106 n y C16 C17 GBJ sing 107 n y C18 C17 GBJ doub 108 n y C17 O3 GBJ sing 109 n n C1 H1 GBJ sing 110 n n C1 H2 GBJ sing 111 n n C1 H3 GBJ sing 112 n n C3 H4 GBJ sing 113 n n C4 H6 GBJ sing 114 n n C7 H8 GBJ sing 115 n n C8 H9 GBJ sing 116 n n C11 H10 GBJ sing 117 n n C11 H11 GBJ sing 118 n n C12 H12 GBJ sing 119 n n C13 H13 GBJ sing 120 n n C13 H14 GBJ sing 121 n n C15 H15 GBJ sing 122 n n C16 H16 GBJ sing 123 n n C18 H17 GBJ sing 124 n n O2 H18 GBJ sing 125 n n O3 H19 GBJ sing 126 n n C20 H20 GBJ sing 127 n n C20 H21 GBJ sing 128 n n C20 H22 GBJ sing 129 n n # _atom_sites.entry_id 4N87 _atom_sites.fract_transf_matrix[1][1] 0.023242 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011772 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015516 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GBJ A 1 201 999 GBJ GLA . D 2 GBJ B 1 201 999 GBJ GLA . E 3 HOH A 1 301 1 HOH HOH . E 3 HOH A 2 302 3 HOH HOH . E 3 HOH A 3 303 6 HOH HOH . E 3 HOH A 4 304 9 HOH HOH . E 3 HOH A 5 305 10 HOH HOH . E 3 HOH A 6 306 11 HOH HOH . E 3 HOH A 7 307 12 HOH HOH . E 3 HOH A 8 308 13 HOH HOH . E 3 HOH A 9 309 16 HOH HOH . E 3 HOH A 10 310 17 HOH HOH . E 3 HOH A 11 311 21 HOH HOH . E 3 HOH A 12 312 22 HOH HOH . E 3 HOH A 13 313 23 HOH HOH . E 3 HOH A 14 314 24 HOH HOH . E 3 HOH A 15 315 26 HOH HOH . E 3 HOH A 16 316 27 HOH HOH . E 3 HOH A 17 317 28 HOH HOH . E 3 HOH A 18 318 31 HOH HOH . E 3 HOH A 19 319 32 HOH HOH . E 3 HOH A 20 320 37 HOH HOH . E 3 HOH A 21 321 38 HOH HOH . E 3 HOH A 22 322 40 HOH HOH . E 3 HOH A 23 323 46 HOH HOH . E 3 HOH A 24 324 47 HOH HOH . E 3 HOH A 25 325 48 HOH HOH . E 3 HOH A 26 326 49 HOH HOH . E 3 HOH A 27 327 50 HOH HOH . E 3 HOH A 28 328 51 HOH HOH . E 3 HOH A 29 329 52 HOH HOH . E 3 HOH A 30 330 53 HOH HOH . E 3 HOH A 31 331 55 HOH HOH . E 3 HOH A 32 332 60 HOH HOH . E 3 HOH A 33 333 61 HOH HOH . E 3 HOH A 34 334 63 HOH HOH . E 3 HOH A 35 335 64 HOH HOH . E 3 HOH A 36 336 65 HOH HOH . E 3 HOH A 37 337 66 HOH HOH . E 3 HOH A 38 338 67 HOH HOH . E 3 HOH A 39 339 69 HOH HOH . E 3 HOH A 40 340 71 HOH HOH . E 3 HOH A 41 341 72 HOH HOH . E 3 HOH A 42 342 75 HOH HOH . E 3 HOH A 43 343 77 HOH HOH . E 3 HOH A 44 344 78 HOH HOH . E 3 HOH A 45 345 79 HOH HOH . E 3 HOH A 46 346 81 HOH HOH . E 3 HOH A 47 347 83 HOH HOH . E 3 HOH A 48 348 84 HOH HOH . E 3 HOH A 49 349 85 HOH HOH . E 3 HOH A 50 350 86 HOH HOH . E 3 HOH A 51 351 87 HOH HOH . E 3 HOH A 52 352 88 HOH HOH . E 3 HOH A 53 353 89 HOH HOH . E 3 HOH A 54 354 90 HOH HOH . E 3 HOH A 55 355 91 HOH HOH . E 3 HOH A 56 356 94 HOH HOH . E 3 HOH A 57 357 96 HOH HOH . E 3 HOH A 58 358 100 HOH HOH . E 3 HOH A 59 359 102 HOH HOH . E 3 HOH A 60 360 103 HOH HOH . E 3 HOH A 61 361 106 HOH HOH . E 3 HOH A 62 362 110 HOH HOH . E 3 HOH A 63 363 112 HOH HOH . E 3 HOH A 64 364 115 HOH HOH . E 3 HOH A 65 365 116 HOH HOH . E 3 HOH A 66 366 117 HOH HOH . F 3 HOH B 1 301 2 HOH HOH . F 3 HOH B 2 302 4 HOH HOH . F 3 HOH B 3 303 5 HOH HOH . F 3 HOH B 4 304 7 HOH HOH . F 3 HOH B 5 305 8 HOH HOH . F 3 HOH B 6 306 14 HOH HOH . F 3 HOH B 7 307 15 HOH HOH . F 3 HOH B 8 308 18 HOH HOH . F 3 HOH B 9 309 19 HOH HOH . F 3 HOH B 10 310 20 HOH HOH . F 3 HOH B 11 311 25 HOH HOH . F 3 HOH B 12 312 29 HOH HOH . F 3 HOH B 13 313 30 HOH HOH . F 3 HOH B 14 314 33 HOH HOH . F 3 HOH B 15 315 34 HOH HOH . F 3 HOH B 16 316 35 HOH HOH . F 3 HOH B 17 317 36 HOH HOH . F 3 HOH B 18 318 39 HOH HOH . F 3 HOH B 19 319 41 HOH HOH . F 3 HOH B 20 320 42 HOH HOH . F 3 HOH B 21 321 43 HOH HOH . F 3 HOH B 22 322 44 HOH HOH . F 3 HOH B 23 323 45 HOH HOH . F 3 HOH B 24 324 54 HOH HOH . F 3 HOH B 25 325 56 HOH HOH . F 3 HOH B 26 326 57 HOH HOH . F 3 HOH B 27 327 58 HOH HOH . F 3 HOH B 28 328 59 HOH HOH . F 3 HOH B 29 329 62 HOH HOH . F 3 HOH B 30 330 68 HOH HOH . F 3 HOH B 31 331 70 HOH HOH . F 3 HOH B 32 332 73 HOH HOH . F 3 HOH B 33 333 74 HOH HOH . F 3 HOH B 34 334 76 HOH HOH . F 3 HOH B 35 335 80 HOH HOH . F 3 HOH B 36 336 82 HOH HOH . F 3 HOH B 37 337 92 HOH HOH . F 3 HOH B 38 338 93 HOH HOH . F 3 HOH B 39 339 95 HOH HOH . F 3 HOH B 40 340 97 HOH HOH . F 3 HOH B 41 341 98 HOH HOH . F 3 HOH B 42 342 99 HOH HOH . F 3 HOH B 43 343 101 HOH HOH . F 3 HOH B 44 344 104 HOH HOH . F 3 HOH B 45 345 105 HOH HOH . F 3 HOH B 46 346 108 HOH HOH . F 3 HOH B 47 347 109 HOH HOH . F 3 HOH B 48 348 113 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GBJ . . . C 2 -20.292 -1.056 -10.765 0.5 12.76 ? C1 GBJ 201 A 1 HETATM 2 C C2 GBJ . . . C 2 -21.387 -0.069 -10.503 0.5 10.56 ? C2 GBJ 201 A 1 HETATM 3 C C3 GBJ . . . C 2 -20.879 1.183 -9.882 0.5 8.95 ? C3 GBJ 201 A 1 HETATM 4 C C4 GBJ . . . C 2 -20.587 1.127 -8.408 0.5 9.68 ? C4 GBJ 201 A 1 HETATM 5 C C5 GBJ . . . C 2 -21.463 0.106 -7.68 0.5 8.24 ? C5 GBJ 201 A 1 HETATM 6 C C6 GBJ . . . C 2 -22.323 -0.725 -8.419 0.5 10.09 ? C6 GBJ 201 A 1 HETATM 7 C C7 GBJ . . . C 2 -23.156 -1.69 -7.734 0.5 8.82 ? C7 GBJ 201 A 1 HETATM 8 C C8 GBJ . . . C 2 -23.101 -1.806 -6.33 0.5 10 ? C8 GBJ 201 A 1 HETATM 9 C C9 GBJ . . . C 2 -22.22 -0.949 -5.575 0.5 10.01 ? C9 GBJ 201 A 1 HETATM 10 C C10 GBJ . . . C 2 -21.405 -0.003 -6.236 0.5 8.22 ? C10 GBJ 201 A 1 HETATM 11 O O1 GBJ . . . C 2 -20.535 0.835 -5.518 0.5 10.17 ? O1 GBJ 201 A 1 HETATM 12 C C11 GBJ . . . C 2 -20.904 1.017 -4.215 0.5 9.97 ? C11 GBJ 201 A 1 HETATM 13 C C12 GBJ . . . C 2 -21.031 -0.289 -3.515 0.5 12.22 ? C12 GBJ 201 A 1 HETATM 14 C C13 GBJ . . . C 2 -22.169 -1.084 -4.063 0.5 9.97 ? C13 GBJ 201 A 1 HETATM 15 C C14 GBJ . . . C 2 -21.267 -0.116 -2.036 0.5 16.76 ? C14 GBJ 201 A 1 HETATM 16 C C15 GBJ . . . C 2 -22.498 0.314 -1.555 0.5 15.6 ? C15 GBJ 201 A 1 HETATM 17 C C16 GBJ . . . C 2 -22.68 0.455 -0.188 0.5 21.56 ? C16 GBJ 201 A 1 HETATM 18 C C17 GBJ . . . C 2 -21.651 0.166 0.694 0.5 23.27 ? C17 GBJ 201 A 1 HETATM 19 C C18 GBJ . . . C 2 -20.426 -0.268 0.213 0.5 22.03 ? C18 GBJ 201 A 1 HETATM 20 C C19 GBJ . . . C 2 -20.235 -0.411 -1.153 0.5 16.37 ? C19 GBJ 201 A 1 HETATM 21 O O2 GBJ . . . C 2 -19.02 -0.844 -1.637 0.5 21.14 ? O2 GBJ 201 A 1 HETATM 22 O O3 GBJ . . . C 2 -21.852 0.314 2.05 0.5 29.21 ? O3 GBJ 201 A 1 HETATM 23 O O4 GBJ . . . C 2 -22.409 -0.644 -9.815 0.5 10.56 ? O4 GBJ 201 A 1 HETATM 24 C C20 GBJ . . . C 2 -21.954 0.282 -11.842 0.5 10.09 ? C20 GBJ 201 A 1 # _model_server_stats.io_time_ms 44 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 24 #