data_4N8P # _model_server_result.job_id cTAAQF7lsAObXrMk3FPKmQ _model_server_result.datetime_utc '2024-11-26 03:03:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4n8p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 4N8P # _exptl.entry_id 4N8P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4N8P _cell.length_a 37.272 _cell.length_b 107.991 _cell.length_c 109.723 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4N8P _symmetry.cell_setting ? _symmetry.Int_Tables_number 24 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_655 -x+1,-y+1/2,z -1 0 0 0 -1 0 0 0 1 37.272 53.9955 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 29 A CYS 59 1_555 A SG CYS 101 A CYS 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf2 A SG CYS 56 A CYS 86 1_555 A SG CYS 75 A CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 250 n n C1 O1 NAG sing 251 n n C1 O5 NAG sing 252 n n C1 H1 NAG sing 253 n n C2 C3 NAG sing 254 n n C2 N2 NAG sing 255 n n C2 H2 NAG sing 256 n n C3 C4 NAG sing 257 n n C3 O3 NAG sing 258 n n C3 H3 NAG sing 259 n n C4 C5 NAG sing 260 n n C4 O4 NAG sing 261 n n C4 H4 NAG sing 262 n n C5 C6 NAG sing 263 n n C5 O5 NAG sing 264 n n C5 H5 NAG sing 265 n n C6 O6 NAG sing 266 n n C6 H61 NAG sing 267 n n C6 H62 NAG sing 268 n n C7 C8 NAG sing 269 n n C7 N2 NAG sing 270 n n C7 O7 NAG doub 271 n n C8 H81 NAG sing 272 n n C8 H82 NAG sing 273 n n C8 H83 NAG sing 274 n n N2 HN2 NAG sing 275 n n O1 HO1 NAG sing 276 n n O3 HO3 NAG sing 277 n n O4 HO4 NAG sing 278 n n O6 HO6 NAG sing 279 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4N8P _atom_sites.fract_transf_matrix[1][1] 0.02683 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00926 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009114 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 201 201 GOL GOL . C 3 NAG A 1 202 202 NAG NAG . D 3 NAG A 1 203 203 NAG NAG . E 4 HOH A 1 301 301 HOH HOH . E 4 HOH A 2 302 302 HOH HOH . E 4 HOH A 3 303 303 HOH HOH . E 4 HOH A 4 304 304 HOH HOH . E 4 HOH A 5 305 305 HOH HOH . E 4 HOH A 6 306 306 HOH HOH . E 4 HOH A 7 307 307 HOH HOH . E 4 HOH A 8 308 308 HOH HOH . E 4 HOH A 9 309 309 HOH HOH . E 4 HOH A 10 310 310 HOH HOH . E 4 HOH A 11 311 311 HOH HOH . E 4 HOH A 12 312 312 HOH HOH . E 4 HOH A 13 313 313 HOH HOH . E 4 HOH A 14 314 314 HOH HOH . E 4 HOH A 15 315 315 HOH HOH . E 4 HOH A 16 316 316 HOH HOH . E 4 HOH A 17 317 317 HOH HOH . E 4 HOH A 18 318 318 HOH HOH . E 4 HOH A 19 319 319 HOH HOH . E 4 HOH A 20 320 320 HOH HOH . E 4 HOH A 21 321 321 HOH HOH . E 4 HOH A 22 322 322 HOH HOH . E 4 HOH A 23 323 323 HOH HOH . E 4 HOH A 24 324 324 HOH HOH . E 4 HOH A 25 325 325 HOH HOH . E 4 HOH A 26 326 326 HOH HOH . E 4 HOH A 27 327 327 HOH HOH . E 4 HOH A 28 328 328 HOH HOH . E 4 HOH A 29 329 329 HOH HOH . E 4 HOH A 30 330 330 HOH HOH . E 4 HOH A 31 331 331 HOH HOH . E 4 HOH A 32 332 332 HOH HOH . E 4 HOH A 33 333 333 HOH HOH . E 4 HOH A 34 334 334 HOH HOH . E 4 HOH A 35 335 335 HOH HOH . E 4 HOH A 36 336 336 HOH HOH . E 4 HOH A 37 337 337 HOH HOH . E 4 HOH A 38 338 338 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . D 3 22.778 43.396 18.13 1 118.72 ? C1 NAG 203 A 1 HETATM 2 C C2 NAG . . . D 3 23.199 42.974 19.524 1 124.65 ? C2 NAG 203 A 1 HETATM 3 C C3 NAG . . . D 3 22.591 43.913 20.56 1 128.78 ? C3 NAG 203 A 1 HETATM 4 C C4 NAG . . . D 3 22.955 45.357 20.239 1 124.53 ? C4 NAG 203 A 1 HETATM 5 C C5 NAG . . . D 3 22.547 45.689 18.805 1 118.14 ? C5 NAG 203 A 1 HETATM 6 C C6 NAG . . . D 3 22.992 47.065 18.368 1 112.39 ? C6 NAG 203 A 1 HETATM 7 C C7 NAG . . . D 3 23.551 40.549 19.407 1 123.74 ? C7 NAG 203 A 1 HETATM 8 C C8 NAG . . . D 3 23.009 39.197 19.768 1 122.19 ? C8 NAG 203 A 1 HETATM 9 N N2 NAG . . . D 3 22.816 41.598 19.789 1 124.34 ? N2 NAG 203 A 1 HETATM 10 O O3 NAG . . . D 3 23.072 43.56 21.852 1 133.45 ? O3 NAG 203 A 1 HETATM 11 O O4 NAG . . . D 3 22.316 46.244 21.151 1 122.24 ? O4 NAG 203 A 1 HETATM 12 O O5 NAG . . . D 3 23.154 44.754 17.901 1 116.74 ? O5 NAG 203 A 1 HETATM 13 O O6 NAG . . . D 3 24.387 47.256 18.571 1 107.36 ? O6 NAG 203 A 1 HETATM 14 O O7 NAG . . . D 3 24.608 40.684 18.795 1 123.08 ? O7 NAG 203 A 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #