data_4N8T # _model_server_result.job_id Mt09Bz67sUhGOoAGnpPYIw _model_server_result.datetime_utc '2024-10-14 04:25:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4n8t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":201}' # _entry.id 4N8T # _exptl.entry_id 4N8T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4N8T _cell.length_a 53.567 _cell.length_b 53.567 _cell.length_c 192.499 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4N8T _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 87 A HIS 87 1_555 C FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.956 ? metalc ? metalc2 C FE HEM . A HEM 201 1_555 H N NO . A NO 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.78 ? metalc ? metalc3 C FE HEM . A HEM 201 1_555 H O NO . A NO 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.776 ? metalc ? metalc4 B NE2 HIS 92 B HIS 92 1_555 I FE HEM . B HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? metalc ? metalc5 I FE HEM . B HEM 201 1_555 J N NO . B NO 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 4N8T _atom_sites.fract_transf_matrix[1][1] 0.018668 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018668 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005195 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 HEM A 1 201 143 HEM HEM . D 4 MBN A 1 202 1 MBN MBN . E 4 MBN A 1 203 2 MBN MBN . F 4 MBN A 1 204 3 MBN MBN . G 5 NO2 A 1 205 4 NO2 NO2 . H 6 NO A 1 206 1 NO NMO . I 3 HEM B 1 201 148 HEM HEM . J 6 NO B 1 202 2 NO NMO . K 7 HOH A 1 301 1 HOH HOH . K 7 HOH A 2 302 2 HOH HOH . K 7 HOH A 3 303 3 HOH HOH . K 7 HOH A 4 304 4 HOH HOH . K 7 HOH A 5 305 6 HOH HOH . K 7 HOH A 6 306 7 HOH HOH . K 7 HOH A 7 307 8 HOH HOH . K 7 HOH A 8 308 9 HOH HOH . K 7 HOH A 9 309 10 HOH HOH . K 7 HOH A 10 310 11 HOH HOH . K 7 HOH A 11 311 17 HOH HOH . K 7 HOH A 12 312 18 HOH HOH . K 7 HOH A 13 313 19 HOH HOH . K 7 HOH A 14 314 20 HOH HOH . K 7 HOH A 15 315 21 HOH HOH . K 7 HOH A 16 316 22 HOH HOH . K 7 HOH A 17 317 24 HOH HOH . K 7 HOH A 18 318 25 HOH HOH . K 7 HOH A 19 319 26 HOH HOH . K 7 HOH A 20 320 27 HOH HOH . K 7 HOH A 21 321 28 HOH HOH . K 7 HOH A 22 322 29 HOH HOH . K 7 HOH A 23 323 30 HOH HOH . K 7 HOH A 24 324 31 HOH HOH . K 7 HOH A 25 325 33 HOH HOH . K 7 HOH A 26 326 38 HOH HOH . K 7 HOH A 27 327 39 HOH HOH . K 7 HOH A 28 328 41 HOH HOH . K 7 HOH A 29 329 43 HOH HOH . K 7 HOH A 30 330 44 HOH HOH . K 7 HOH A 31 331 46 HOH HOH . K 7 HOH A 32 332 48 HOH HOH . K 7 HOH A 33 333 49 HOH HOH . K 7 HOH A 34 334 52 HOH HOH . K 7 HOH A 35 335 53 HOH HOH . K 7 HOH A 36 336 57 HOH HOH . K 7 HOH A 37 337 58 HOH HOH . K 7 HOH A 38 338 59 HOH HOH . K 7 HOH A 39 339 62 HOH HOH . K 7 HOH A 40 340 65 HOH HOH . K 7 HOH A 41 341 69 HOH HOH . K 7 HOH A 42 342 72 HOH HOH . K 7 HOH A 43 343 73 HOH HOH . K 7 HOH A 44 344 75 HOH HOH . K 7 HOH A 45 345 77 HOH HOH . K 7 HOH A 46 346 78 HOH HOH . K 7 HOH A 47 347 82 HOH HOH . K 7 HOH A 48 348 85 HOH HOH . K 7 HOH A 49 349 86 HOH HOH . K 7 HOH A 50 350 87 HOH HOH . K 7 HOH A 51 351 89 HOH HOH . K 7 HOH A 52 352 90 HOH HOH . K 7 HOH A 53 353 91 HOH HOH . K 7 HOH A 54 354 92 HOH HOH . K 7 HOH A 55 355 93 HOH HOH . K 7 HOH A 56 356 94 HOH HOH . K 7 HOH A 57 357 100 HOH HOH . K 7 HOH A 58 358 108 HOH HOH . K 7 HOH A 59 359 109 HOH HOH . K 7 HOH A 60 360 110 HOH HOH . K 7 HOH A 61 361 111 HOH HOH . K 7 HOH A 62 362 112 HOH HOH . K 7 HOH A 63 363 113 HOH HOH . L 7 HOH B 1 301 5 HOH HOH . L 7 HOH B 2 302 12 HOH HOH . L 7 HOH B 3 303 13 HOH HOH . L 7 HOH B 4 304 14 HOH HOH . L 7 HOH B 5 305 15 HOH HOH . L 7 HOH B 6 306 16 HOH HOH . L 7 HOH B 7 307 23 HOH HOH . L 7 HOH B 8 308 32 HOH HOH . L 7 HOH B 9 309 34 HOH HOH . L 7 HOH B 10 310 35 HOH HOH . L 7 HOH B 11 311 36 HOH HOH . L 7 HOH B 12 312 37 HOH HOH . L 7 HOH B 13 313 40 HOH HOH . L 7 HOH B 14 314 42 HOH HOH . L 7 HOH B 15 315 45 HOH HOH . L 7 HOH B 16 316 47 HOH HOH . L 7 HOH B 17 317 50 HOH HOH . L 7 HOH B 18 318 51 HOH HOH . L 7 HOH B 19 319 54 HOH HOH . L 7 HOH B 20 320 55 HOH HOH . L 7 HOH B 21 321 56 HOH HOH . L 7 HOH B 22 322 60 HOH HOH . L 7 HOH B 23 323 61 HOH HOH . L 7 HOH B 24 324 63 HOH HOH . L 7 HOH B 25 325 64 HOH HOH . L 7 HOH B 26 326 66 HOH HOH . L 7 HOH B 27 327 67 HOH HOH . L 7 HOH B 28 328 68 HOH HOH . L 7 HOH B 29 329 70 HOH HOH . L 7 HOH B 30 330 71 HOH HOH . L 7 HOH B 31 331 74 HOH HOH . L 7 HOH B 32 332 76 HOH HOH . L 7 HOH B 33 333 79 HOH HOH . L 7 HOH B 34 334 80 HOH HOH . L 7 HOH B 35 335 81 HOH HOH . L 7 HOH B 36 336 83 HOH HOH . L 7 HOH B 37 337 84 HOH HOH . L 7 HOH B 38 338 88 HOH HOH . L 7 HOH B 39 339 95 HOH HOH . L 7 HOH B 40 340 96 HOH HOH . L 7 HOH B 41 341 97 HOH HOH . L 7 HOH B 42 342 98 HOH HOH . L 7 HOH B 43 343 99 HOH HOH . L 7 HOH B 44 344 101 HOH HOH . L 7 HOH B 45 345 102 HOH HOH . L 7 HOH B 46 346 103 HOH HOH . L 7 HOH B 47 347 104 HOH HOH . L 7 HOH B 48 348 105 HOH HOH . L 7 HOH B 49 349 106 HOH HOH . L 7 HOH B 50 350 107 HOH HOH . L 7 HOH B 51 351 114 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . I 3 -20.166 8.327 -1.539 1 34.08 ? CHA HEM 201 B 1 HETATM 2 C CHB HEM . . . I 3 -19.055 5.376 2.18 1 33.13 ? CHB HEM 201 B 1 HETATM 3 C CHC HEM . . . I 3 -14.321 6.039 1.237 1 35 ? CHC HEM 201 B 1 HETATM 4 C CHD HEM . . . I 3 -15.449 9.144 -2.355 1 35.89 ? CHD HEM 201 B 1 HETATM 5 C C1A HEM . . . I 3 -20.22 7.471 -0.474 1 34.06 ? C1A HEM 201 B 1 HETATM 6 C C2A HEM . . . I 3 -21.452 7.136 0.155 1 34.69 ? C2A HEM 201 B 1 HETATM 7 C C3A HEM . . . I 3 -21.169 6.298 1.245 1 30.07 ? C3A HEM 201 B 1 HETATM 8 C C4A HEM . . . I 3 -19.747 6.155 1.26 1 32.45 ? C4A HEM 201 B 1 HETATM 9 C CMA HEM . . . I 3 -22.042 5.595 2.274 1 34.57 ? CMA HEM 201 B 1 HETATM 10 C CAA HEM . . . I 3 -22.735 7.685 -0.394 1 32.08 ? CAA HEM 201 B 1 HETATM 11 C CBA HEM . . . I 3 -23.291 6.643 -1.368 1 40.29 ? CBA HEM 201 B 1 HETATM 12 C CGA HEM . . . I 3 -24.772 6.883 -1.639 1 47.86 ? CGA HEM 201 B 1 HETATM 13 O O1A HEM . . . I 3 -25.252 8.055 -1.648 1 36.84 ? O1A HEM 201 B 1 HETATM 14 O O2A HEM . . . I 3 -25.524 5.886 -1.834 1 47.84 ? O2A HEM 201 B 1 HETATM 15 C C1B HEM . . . I 3 -17.673 5.274 2.241 1 34.34 ? C1B HEM 201 B 1 HETATM 16 C C2B HEM . . . I 3 -16.967 4.445 3.185 1 35.87 ? C2B HEM 201 B 1 HETATM 17 C C3B HEM . . . I 3 -15.603 4.62 2.937 1 36.4 ? C3B HEM 201 B 1 HETATM 18 C C4B HEM . . . I 3 -15.508 5.572 1.794 1 36.42 ? C4B HEM 201 B 1 HETATM 19 C CMB HEM . . . I 3 -17.551 3.534 4.266 1 30.64 ? CMB HEM 201 B 1 HETATM 20 C CAB HEM . . . I 3 -14.525 3.906 3.653 1 36.12 ? CAB HEM 201 B 1 HETATM 21 C CBB HEM . . . I 3 -13.336 4.373 3.951 1 52.23 ? CBB HEM 201 B 1 HETATM 22 C C1C HEM . . . I 3 -14.188 6.983 0.223 1 37.96 ? C1C HEM 201 B 1 HETATM 23 C C2C HEM . . . I 3 -12.989 7.617 -0.184 1 38.93 ? C2C HEM 201 B 1 HETATM 24 C C3C HEM . . . I 3 -13.314 8.487 -1.237 1 34.26 ? C3C HEM 201 B 1 HETATM 25 C C4C HEM . . . I 3 -14.732 8.404 -1.431 1 38.1 ? C4C HEM 201 B 1 HETATM 26 C CMC HEM . . . I 3 -11.649 7.337 0.455 1 30.13 ? CMC HEM 201 B 1 HETATM 27 C CAC HEM . . . I 3 -12.426 9.41 -1.983 1 37.72 ? CAC HEM 201 B 1 HETATM 28 C CBC HEM . . . I 3 -11.305 9.877 -1.426 1 34.28 ? CBC HEM 201 B 1 HETATM 29 C C1D HEM . . . I 3 -16.845 9.109 -2.365 1 38.31 ? C1D HEM 201 B 1 HETATM 30 C C2D HEM . . . I 3 -17.583 9.949 -3.309 1 37.69 ? C2D HEM 201 B 1 HETATM 31 C C3D HEM . . . I 3 -18.901 9.729 -3.085 1 35.75 ? C3D HEM 201 B 1 HETATM 32 C C4D HEM . . . I 3 -18.945 8.765 -1.997 1 38.9 ? C4D HEM 201 B 1 HETATM 33 C CMD HEM . . . I 3 -16.93 10.858 -4.324 1 36.19 ? CMD HEM 201 B 1 HETATM 34 C CAD HEM . . . I 3 -20.097 10.359 -3.791 1 40.57 ? CAD HEM 201 B 1 HETATM 35 C CBD HEM . . . I 3 -20.463 9.491 -4.994 1 50.32 ? CBD HEM 201 B 1 HETATM 36 C CGD HEM . . . I 3 -21.863 9.722 -5.558 1 58.17 ? CGD HEM 201 B 1 HETATM 37 O O1D HEM . . . I 3 -22.873 9.788 -4.794 1 56.08 ? O1D HEM 201 B 1 HETATM 38 O O2D HEM . . . I 3 -22.005 9.805 -6.812 1 54.64 ? O2D HEM 201 B 1 HETATM 39 N NA HEM . . . I 3 -19.194 6.915 0.268 1 32.64 ? NA HEM 201 B 1 HETATM 40 N NB HEM . . . I 3 -16.788 5.911 1.446 1 36.3 ? NB HEM 201 B 1 HETATM 41 N NC HEM . . . I 3 -15.217 7.526 -0.498 1 40.32 ? NC HEM 201 B 1 HETATM 42 N ND HEM . . . I 3 -17.693 8.427 -1.552 1 37.3 ? ND HEM 201 B 1 HETATM 43 FE FE HEM . . . I 3 -17.249 7.204 -0.141 1 36.71 ? FE HEM 201 B 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #