data_4N8U
#
_model_server_result.job_id            qcd5iRg7KAZp9NmhhHwPpQ 
_model_server_result.datetime_utc      '2024-12-12 02:10:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4n8u 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":404}' 
#
_entry.id    4N8U 
#
_exptl.entry_id    4N8U 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              122.143 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4N8U 
_cell.length_a            48.72 
_cell.length_b            79.6 
_cell.length_c            204.05 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4N8U 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             L 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 69 A HIS 101 1_555 F CU CU . A CU 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? 
metalc ? metalc2 A NE2 HIS 121 A HIS 153 1_555 F CU CU . A CU 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.829 ? 
metalc ? metalc3 A NE2 HIS 123 A HIS 155 1_555 P CU CU . C CU 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? 
metalc ? metalc4 A ND1 HIS 196 A HIS 228 1_555 D CU CU . A CU 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.868 ? 
metalc ? metalc5 A NE2 HIS 201 A HIS 233 1_555 E CU CU . A CU 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? 
metalc ? metalc6 A NE2 HIS 252 A HIS 284 1_555 E CU CU . A CU 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? 
metalc ? metalc7 A SG CYS 253 A CYS 285 1_555 D CU CU . A CU 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? 
metalc ? metalc8 A NE2 HIS 254 A HIS 286 1_555 K CU CU . B CU 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? 
metalc ? metalc9 A ND1 HIS 258 A HIS 290 1_555 D CU CU . A CU 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.855 ? 
metalc ? metalc10 E CU CU . A CU 402 1_555 B NE2 HIS 123 B HIS 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? 
metalc ? metalc11 F CU CU . A CU 403 1_555 C NE2 HIS 254 C HIS 286 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? 
metalc ? metalc12 T O HOH . A HOH 517 1_555 K CU CU . B CU 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? 
metalc ? metalc13 B NE2 HIS 69 B HIS 101 1_555 K CU CU . B CU 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.953 ? 
metalc ? metalc14 B NE2 HIS 121 B HIS 153 1_555 K CU CU . B CU 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
metalc ? metalc15 B ND1 HIS 196 B HIS 228 1_555 I CU CU . B CU 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.936 ? 
metalc ? metalc16 B NE2 HIS 201 B HIS 233 1_555 J CU CU . B CU 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? 
metalc ? metalc17 B NE2 HIS 252 B HIS 284 1_555 J CU CU . B CU 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? 
metalc ? metalc18 B SG CYS 253 B CYS 285 1_555 I CU CU . B CU 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? 
metalc ? metalc19 B NE2 HIS 254 B HIS 286 1_555 Q CU CU . C CU 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? 
metalc ? metalc20 B ND1 HIS 258 B HIS 290 1_555 I CU CU . B CU 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? 
metalc ? metalc21 J CU CU . B CU 402 1_555 C NE2 HIS 123 C HIS 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? 
metalc ? metalc22 U O HOH . B HOH 519 1_555 Q CU CU . C CU 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? 
metalc ? metalc23 C NE2 HIS 69 C HIS 101 1_555 Q CU CU . C CU 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.866 ? 
metalc ? metalc24 C NE2 HIS 121 C HIS 153 1_555 Q CU CU . C CU 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? 
metalc ? metalc25 C ND1 HIS 196 C HIS 228 1_555 O CU CU . C CU 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.967 ? 
metalc ? metalc26 C NE2 HIS 201 C HIS 233 1_555 P CU CU . C CU 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.96 ? 
metalc ? metalc27 C NE2 HIS 252 C HIS 284 1_555 P CU CU . C CU 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.575 ? 
metalc ? metalc28 C SG CYS 253 C CYS 285 1_555 O CU CU . C CU 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? 
metalc ? metalc29 C ND1 HIS 258 C HIS 290 1_555 O CU CU . C CU 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? 
#
_chem_comp.formula           'C4 H12 N O3 1' 
_chem_comp.formula_weight    122.143 
_chem_comp.id                TRS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'TRIS BUFFER' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C C1 TRS sing 334 n n 
C C2 TRS sing 335 n n 
C C3 TRS sing 336 n n 
C N TRS sing 337 n n 
C1 O1 TRS sing 338 n n 
C1 H11 TRS sing 339 n n 
C1 H12 TRS sing 340 n n 
C2 O2 TRS sing 341 n n 
C2 H21 TRS sing 342 n n 
C2 H22 TRS sing 343 n n 
C3 O3 TRS sing 344 n n 
C3 H31 TRS sing 345 n n 
C3 H32 TRS sing 346 n n 
N HN1 TRS sing 347 n n 
N HN2 TRS sing 348 n n 
N HN3 TRS sing 349 n n 
O1 HO1 TRS sing 350 n n 
O2 HO2 TRS sing 351 n n 
O3 HO3 TRS sing 352 n n 
#
_atom_sites.entry_id                     4N8U 
_atom_sites.fract_transf_matrix[1][1]    0.020525 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012563 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004901 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 CU A 1 401 301 CU CU . 
E 2 CU A 1 402 302 CU CU . 
F 2 CU A 1 403 303 CU CU . 
G 3 CL A 1 404 1 CL CL . 
H 3 CL A 1 405 4 CL CL . 
I 2 CU B 1 401 301 CU CU . 
J 2 CU B 1 402 302 CU CU . 
K 2 CU B 1 403 303 CU CU . 
L 4 TRS B 1 404 1 TRS TRS . 
M 3 CL B 1 405 2 CL CL . 
N 3 CL B 1 406 3 CL CL . 
O 2 CU C 1 401 301 CU CU . 
P 2 CU C 1 402 302 CU CU . 
Q 2 CU C 1 403 303 CU CU . 
R 3 CL C 1 404 304 CL CL . 
S 3 CL C 1 405 305 CL CL . 
T 5 HOH A 1 501 401 HOH HOH . 
T 5 HOH A 2 502 402 HOH HOH . 
T 5 HOH A 3 503 403 HOH HOH . 
T 5 HOH A 4 504 404 HOH HOH . 
T 5 HOH A 5 505 406 HOH HOH . 
T 5 HOH A 6 506 407 HOH HOH . 
T 5 HOH A 7 507 408 HOH HOH . 
T 5 HOH A 8 508 409 HOH HOH . 
T 5 HOH A 9 509 410 HOH HOH . 
T 5 HOH A 10 510 411 HOH HOH . 
T 5 HOH A 11 511 412 HOH HOH . 
T 5 HOH A 12 512 413 HOH HOH . 
T 5 HOH A 13 513 414 HOH HOH . 
T 5 HOH A 14 514 415 HOH HOH . 
T 5 HOH A 15 515 416 HOH HOH . 
T 5 HOH A 16 516 417 HOH HOH . 
T 5 HOH A 17 517 416 HOH HOH . 
T 5 HOH A 18 518 5 HOH HOH . 
T 5 HOH A 19 519 6 HOH HOH . 
T 5 HOH A 20 520 7 HOH HOH . 
T 5 HOH A 21 521 9 HOH HOH . 
T 5 HOH A 22 522 11 HOH HOH . 
T 5 HOH A 23 523 15 HOH HOH . 
T 5 HOH A 24 524 17 HOH HOH . 
T 5 HOH A 25 525 19 HOH HOH . 
T 5 HOH A 26 526 20 HOH HOH . 
T 5 HOH A 27 527 21 HOH HOH . 
T 5 HOH A 28 528 22 HOH HOH . 
T 5 HOH A 29 529 24 HOH HOH . 
T 5 HOH A 30 530 29 HOH HOH . 
U 5 HOH B 1 501 401 HOH HOH . 
U 5 HOH B 2 502 402 HOH HOH . 
U 5 HOH B 3 503 403 HOH HOH . 
U 5 HOH B 4 504 404 HOH HOH . 
U 5 HOH B 5 505 405 HOH HOH . 
U 5 HOH B 6 506 406 HOH HOH . 
U 5 HOH B 7 507 407 HOH HOH . 
U 5 HOH B 8 508 408 HOH HOH . 
U 5 HOH B 9 509 409 HOH HOH . 
U 5 HOH B 10 510 410 HOH HOH . 
U 5 HOH B 11 511 411 HOH HOH . 
U 5 HOH B 12 512 412 HOH HOH . 
U 5 HOH B 13 513 413 HOH HOH . 
U 5 HOH B 14 514 414 HOH HOH . 
U 5 HOH B 15 515 415 HOH HOH . 
U 5 HOH B 16 516 417 HOH HOH . 
U 5 HOH B 17 517 418 HOH HOH . 
U 5 HOH B 18 518 419 HOH HOH . 
U 5 HOH B 19 519 420 HOH HOH . 
U 5 HOH B 20 520 421 HOH HOH . 
U 5 HOH B 21 521 3 HOH HOH . 
U 5 HOH B 22 522 8 HOH HOH . 
U 5 HOH B 23 523 10 HOH HOH . 
U 5 HOH B 24 524 12 HOH HOH . 
U 5 HOH B 25 525 13 HOH HOH . 
U 5 HOH B 26 526 16 HOH HOH . 
U 5 HOH B 27 527 18 HOH HOH . 
U 5 HOH B 28 528 23 HOH HOH . 
U 5 HOH B 29 529 25 HOH HOH . 
U 5 HOH B 30 530 26 HOH HOH . 
U 5 HOH B 31 531 28 HOH HOH . 
V 5 HOH C 1 501 405 HOH HOH . 
V 5 HOH C 2 502 401 HOH HOH . 
V 5 HOH C 3 503 402 HOH HOH . 
V 5 HOH C 4 504 403 HOH HOH . 
V 5 HOH C 5 505 404 HOH HOH . 
V 5 HOH C 6 506 405 HOH HOH . 
V 5 HOH C 7 507 406 HOH HOH . 
V 5 HOH C 8 508 407 HOH HOH . 
V 5 HOH C 9 509 408 HOH HOH . 
V 5 HOH C 10 510 409 HOH HOH . 
V 5 HOH C 11 511 410 HOH HOH . 
V 5 HOH C 12 512 411 HOH HOH . 
V 5 HOH C 13 513 412 HOH HOH . 
V 5 HOH C 14 514 413 HOH HOH . 
V 5 HOH C 15 515 414 HOH HOH . 
V 5 HOH C 16 516 415 HOH HOH . 
V 5 HOH C 17 517 416 HOH HOH . 
V 5 HOH C 18 518 1 HOH HOH . 
V 5 HOH C 19 519 2 HOH HOH . 
V 5 HOH C 20 520 4 HOH HOH . 
V 5 HOH C 21 521 27 HOH HOH . 
V 5 HOH C 22 522 30 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C TRS . . . L 4 26.78 -16.718 -37.825 1 30.46 ? C TRS 404 B 1 
HETATM 2 C C1 TRS . . . L 4 27.786 -17.858 -37.804 1 38.5 ? C1 TRS 404 B 1 
HETATM 3 C C2 TRS . . . L 4 25.654 -16.947 -38.857 1 38.27 ? C2 TRS 404 B 1 
HETATM 4 C C3 TRS . . . L 4 27.491 -15.456 -38.274 1 31.29 ? C3 TRS 404 B 1 
HETATM 5 N N TRS . . . L 4 26.332 -16.512 -36.452 1 21.47 ? N TRS 404 B 1 
HETATM 6 O O1 TRS . . . L 4 28.101 -18.268 -39.119 1 40.57 ? O1 TRS 404 B 1 
HETATM 7 O O2 TRS . . . L 4 24.446 -17.576 -38.454 1 28.37 ? O2 TRS 404 B 1 
HETATM 8 O O3 TRS . . . L 4 27.372 -15.38 -39.683 1 38.76 ? O3 TRS 404 B 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    69 
_model_server_stats.query_time_ms           506 
_model_server_stats.encode_time_ms          85 
_model_server_stats.element_count           8 
#