data_4N9Q # _model_server_result.job_id vWt92TU1Psbvt-gCio_fnw _model_server_result.datetime_utc '2024-11-23 14:09:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4n9q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":301}' # _entry.id 4N9Q # _exptl.entry_id 4N9Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4N9Q _cell.length_a 82.402 _cell.length_b 82.402 _cell.length_c 108.472 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4N9Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 G N N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 4N9Q _atom_sites.fract_transf_matrix[1][1] 0.012136 _atom_sites.fract_transf_matrix[1][2] 0.007007 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014013 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009219 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FMN A 1 301 1213 FMN FMN . D 3 UQ1 A 1 302 1 UQ1 UQ1 . E 4 GOL A 1 303 1 GOL GOL . F 5 SO4 A 1 304 1 SO4 SO4 . G 2 FMN B 1 301 1213 FMN FMN . H 6 HOH A 1 401 1 HOH HOH . H 6 HOH A 2 402 3 HOH HOH . H 6 HOH A 3 403 5 HOH HOH . H 6 HOH A 4 404 6 HOH HOH . H 6 HOH A 5 405 7 HOH HOH . H 6 HOH A 6 406 10 HOH HOH . H 6 HOH A 7 407 11 HOH HOH . H 6 HOH A 8 408 12 HOH HOH . H 6 HOH A 9 409 13 HOH HOH . H 6 HOH A 10 410 14 HOH HOH . H 6 HOH A 11 411 16 HOH HOH . H 6 HOH A 12 412 17 HOH HOH . H 6 HOH A 13 413 19 HOH HOH . H 6 HOH A 14 414 23 HOH HOH . H 6 HOH A 15 415 26 HOH HOH . H 6 HOH A 16 416 27 HOH HOH . H 6 HOH A 17 417 28 HOH HOH . H 6 HOH A 18 418 30 HOH HOH . H 6 HOH A 19 419 31 HOH HOH . H 6 HOH A 20 420 33 HOH HOH . H 6 HOH A 21 421 34 HOH HOH . H 6 HOH A 22 422 36 HOH HOH . H 6 HOH A 23 423 38 HOH HOH . H 6 HOH A 24 424 40 HOH HOH . H 6 HOH A 25 425 41 HOH HOH . H 6 HOH A 26 426 43 HOH HOH . H 6 HOH A 27 427 46 HOH HOH . H 6 HOH A 28 428 47 HOH HOH . H 6 HOH A 29 429 54 HOH HOH . H 6 HOH A 30 430 55 HOH HOH . H 6 HOH A 31 431 56 HOH HOH . H 6 HOH A 32 432 57 HOH HOH . H 6 HOH A 33 433 58 HOH HOH . H 6 HOH A 34 434 60 HOH HOH . H 6 HOH A 35 435 61 HOH HOH . H 6 HOH A 36 436 62 HOH HOH . H 6 HOH A 37 437 64 HOH HOH . H 6 HOH A 38 438 65 HOH HOH . H 6 HOH A 39 439 66 HOH HOH . H 6 HOH A 40 440 67 HOH HOH . H 6 HOH A 41 441 69 HOH HOH . H 6 HOH A 42 442 70 HOH HOH . H 6 HOH A 43 443 71 HOH HOH . H 6 HOH A 44 444 73 HOH HOH . H 6 HOH A 45 445 75 HOH HOH . H 6 HOH A 46 446 77 HOH HOH . H 6 HOH A 47 447 82 HOH HOH . H 6 HOH A 48 448 84 HOH HOH . H 6 HOH A 49 449 85 HOH HOH . H 6 HOH A 50 450 86 HOH HOH . H 6 HOH A 51 451 87 HOH HOH . H 6 HOH A 52 452 89 HOH HOH . H 6 HOH A 53 453 92 HOH HOH . H 6 HOH A 54 454 95 HOH HOH . H 6 HOH A 55 455 96 HOH HOH . H 6 HOH A 56 456 97 HOH HOH . H 6 HOH A 57 457 99 HOH HOH . H 6 HOH A 58 458 100 HOH HOH . H 6 HOH A 59 459 101 HOH HOH . H 6 HOH A 60 460 105 HOH HOH . H 6 HOH A 61 461 106 HOH HOH . H 6 HOH A 62 462 110 HOH HOH . H 6 HOH A 63 463 111 HOH HOH . H 6 HOH A 64 464 112 HOH HOH . H 6 HOH A 65 465 117 HOH HOH . H 6 HOH A 66 466 118 HOH HOH . H 6 HOH A 67 467 120 HOH HOH . H 6 HOH A 68 468 122 HOH HOH . H 6 HOH A 69 469 128 HOH HOH . H 6 HOH A 70 470 130 HOH HOH . H 6 HOH A 71 471 137 HOH HOH . H 6 HOH A 72 472 140 HOH HOH . H 6 HOH A 73 473 143 HOH HOH . H 6 HOH A 74 474 144 HOH HOH . H 6 HOH A 75 475 146 HOH HOH . H 6 HOH A 76 476 147 HOH HOH . H 6 HOH A 77 477 148 HOH HOH . H 6 HOH A 78 478 154 HOH HOH . H 6 HOH A 79 479 156 HOH HOH . H 6 HOH A 80 480 157 HOH HOH . H 6 HOH A 81 481 162 HOH HOH . H 6 HOH A 82 482 164 HOH HOH . H 6 HOH A 83 483 169 HOH HOH . H 6 HOH A 84 484 171 HOH HOH . H 6 HOH A 85 485 174 HOH HOH . I 6 HOH B 1 401 2 HOH HOH . I 6 HOH B 2 402 4 HOH HOH . I 6 HOH B 3 403 8 HOH HOH . I 6 HOH B 4 404 9 HOH HOH . I 6 HOH B 5 405 15 HOH HOH . I 6 HOH B 6 406 18 HOH HOH . I 6 HOH B 7 407 20 HOH HOH . I 6 HOH B 8 408 21 HOH HOH . I 6 HOH B 9 409 22 HOH HOH . I 6 HOH B 10 410 24 HOH HOH . I 6 HOH B 11 411 25 HOH HOH . I 6 HOH B 12 412 29 HOH HOH . I 6 HOH B 13 413 32 HOH HOH . I 6 HOH B 14 414 35 HOH HOH . I 6 HOH B 15 415 37 HOH HOH . I 6 HOH B 16 416 39 HOH HOH . I 6 HOH B 17 417 42 HOH HOH . I 6 HOH B 18 418 44 HOH HOH . I 6 HOH B 19 419 45 HOH HOH . I 6 HOH B 20 420 48 HOH HOH . I 6 HOH B 21 421 49 HOH HOH . I 6 HOH B 22 422 50 HOH HOH . I 6 HOH B 23 423 51 HOH HOH . I 6 HOH B 24 424 52 HOH HOH . I 6 HOH B 25 425 53 HOH HOH . I 6 HOH B 26 426 59 HOH HOH . I 6 HOH B 27 427 63 HOH HOH . I 6 HOH B 28 428 68 HOH HOH . I 6 HOH B 29 429 72 HOH HOH . I 6 HOH B 30 430 74 HOH HOH . I 6 HOH B 31 431 76 HOH HOH . I 6 HOH B 32 432 78 HOH HOH . I 6 HOH B 33 433 79 HOH HOH . I 6 HOH B 34 434 80 HOH HOH . I 6 HOH B 35 435 81 HOH HOH . I 6 HOH B 36 436 83 HOH HOH . I 6 HOH B 37 437 88 HOH HOH . I 6 HOH B 38 438 90 HOH HOH . I 6 HOH B 39 439 91 HOH HOH . I 6 HOH B 40 440 93 HOH HOH . I 6 HOH B 41 441 94 HOH HOH . I 6 HOH B 42 442 98 HOH HOH . I 6 HOH B 43 443 102 HOH HOH . I 6 HOH B 44 444 103 HOH HOH . I 6 HOH B 45 445 104 HOH HOH . I 6 HOH B 46 446 107 HOH HOH . I 6 HOH B 47 447 108 HOH HOH . I 6 HOH B 48 448 109 HOH HOH . I 6 HOH B 49 449 113 HOH HOH . I 6 HOH B 50 450 114 HOH HOH . I 6 HOH B 51 451 115 HOH HOH . I 6 HOH B 52 452 116 HOH HOH . I 6 HOH B 53 453 119 HOH HOH . I 6 HOH B 54 454 121 HOH HOH . I 6 HOH B 55 455 127 HOH HOH . I 6 HOH B 56 456 133 HOH HOH . I 6 HOH B 57 457 135 HOH HOH . I 6 HOH B 58 458 138 HOH HOH . I 6 HOH B 59 459 141 HOH HOH . I 6 HOH B 60 460 145 HOH HOH . I 6 HOH B 61 461 150 HOH HOH . I 6 HOH B 62 462 151 HOH HOH . I 6 HOH B 63 463 152 HOH HOH . I 6 HOH B 64 464 153 HOH HOH . I 6 HOH B 65 465 158 HOH HOH . I 6 HOH B 66 466 159 HOH HOH . I 6 HOH B 67 467 160 HOH HOH . I 6 HOH B 68 468 161 HOH HOH . I 6 HOH B 69 469 165 HOH HOH . I 6 HOH B 70 470 167 HOH HOH . I 6 HOH B 71 471 170 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . G 2 34.434 -11.49 22.49 1 40.15 ? N1 FMN 301 B 1 HETATM 2 C C2 FMN . . . G 2 35.27 -11.144 21.449 1 43.92 ? C2 FMN 301 B 1 HETATM 3 O O2 FMN . . . G 2 36.091 -10.24 21.6 1 58.62 ? O2 FMN 301 B 1 HETATM 4 N N3 FMN . . . G 2 35.19 -11.809 20.244 1 47 ? N3 FMN 301 B 1 HETATM 5 C C4 FMN . . . G 2 34.267 -12.821 20.081 1 38.76 ? C4 FMN 301 B 1 HETATM 6 O O4 FMN . . . G 2 34.193 -13.414 19.005 1 40.55 ? O4 FMN 301 B 1 HETATM 7 C C4A FMN . . . G 2 33.425 -13.169 21.132 1 37.53 ? C4A FMN 301 B 1 HETATM 8 N N5 FMN . . . G 2 32.507 -14.181 20.976 1 35.23 ? N5 FMN 301 B 1 HETATM 9 C C5A FMN . . . G 2 31.664 -14.529 22.006 1 38.76 ? C5A FMN 301 B 1 HETATM 10 C C6 FMN . . . G 2 30.742 -15.553 21.824 1 36.08 ? C6 FMN 301 B 1 HETATM 11 C C7 FMN . . . G 2 29.887 -15.919 22.854 1 38.14 ? C7 FMN 301 B 1 HETATM 12 C C7M FMN . . . G 2 28.905 -17.03 22.604 1 36.68 ? C7M FMN 301 B 1 HETATM 13 C C8 FMN . . . G 2 29.962 -15.252 24.075 1 31.11 ? C8 FMN 301 B 1 HETATM 14 C C8M FMN . . . G 2 29.062 -15.609 25.22 1 31.75 ? C8M FMN 301 B 1 HETATM 15 C C9 FMN . . . G 2 30.888 -14.232 24.251 1 36.26 ? C9 FMN 301 B 1 HETATM 16 C C9A FMN . . . G 2 31.744 -13.864 23.219 1 36.77 ? C9A FMN 301 B 1 HETATM 17 N N10 FMN . . . G 2 32.67 -12.849 23.387 1 40.43 ? N10 FMN 301 B 1 HETATM 18 C C10 FMN . . . G 2 33.507 -12.501 22.343 1 43.56 ? C10 FMN 301 B 1 HETATM 19 C C1' FMN . . . G 2 32.753 -12.113 24.695 1 45.12 ? C1' FMN 301 B 1 HETATM 20 C C2' FMN . . . G 2 31.603 -11.111 24.755 1 45.95 ? C2' FMN 301 B 1 HETATM 21 O O2' FMN . . . G 2 31.592 -10.358 23.56 1 43.82 ? O2' FMN 301 B 1 HETATM 22 C C3' FMN . . . G 2 31.748 -10.223 25.985 1 44.36 ? C3' FMN 301 B 1 HETATM 23 O O3' FMN . . . G 2 31.641 -11.049 27.125 1 42.75 ? O3' FMN 301 B 1 HETATM 24 C C4' FMN . . . G 2 30.715 -9.098 26.051 1 44.36 ? C4' FMN 301 B 1 HETATM 25 O O4' FMN . . . G 2 31.018 -8.267 27.15 1 51.65 ? O4' FMN 301 B 1 HETATM 26 C C5' FMN . . . G 2 29.282 -9.598 26.2 1 44.51 ? C5' FMN 301 B 1 HETATM 27 O O5' FMN . . . G 2 28.423 -8.482 26.18 1 46.87 ? O5' FMN 301 B 1 HETATM 28 P P FMN . . . G 2 27.147 -8.424 27.149 1 44.6 ? P FMN 301 B 1 HETATM 29 O O1P FMN . . . G 2 27.659 -8.1 28.531 1 42.41 ? O1P FMN 301 B 1 HETATM 30 O O2P FMN . . . G 2 26.448 -9.764 27.163 1 44.32 ? O2P FMN 301 B 1 HETATM 31 O O3P FMN . . . G 2 26.205 -7.346 26.667 1 38.48 ? O3P FMN 301 B 1 HETATM 32 H HN3 FMN . . . G 2 35.878 -11.607 19.492 1 56.4 ? HN3 FMN 301 B 1 HETATM 33 H H6 FMN . . . G 2 30.69 -16.072 20.866 1 43.3 ? H6 FMN 301 B 1 HETATM 34 H HM71 FMN . . . G 2 28.308 -17.196 23.501 1 44.01 ? HM71 FMN 301 B 1 HETATM 35 H HM72 FMN . . . G 2 29.444 -17.942 22.352 1 44.01 ? HM72 FMN 301 B 1 HETATM 36 H HM73 FMN . . . G 2 28.249 -16.755 21.777 1 44.01 ? HM73 FMN 301 B 1 HETATM 37 H HM81 FMN . . . G 2 29.287 -14.969 26.073 1 38.1 ? HM81 FMN 301 B 1 HETATM 38 H HM82 FMN . . . G 2 29.221 -16.651 25.496 1 38.1 ? HM82 FMN 301 B 1 HETATM 39 H HM83 FMN . . . G 2 28.023 -15.466 24.923 1 38.1 ? HM83 FMN 301 B 1 HETATM 40 H H9 FMN . . . G 2 30.944 -13.714 25.209 1 43.51 ? H9 FMN 301 B 1 HETATM 41 H "H1'1" FMN . . . G 2 33.707 -11.591 24.769 1 54.14 ? "H1'1" FMN 301 B 1 HETATM 42 H "H1'2" FMN . . . G 2 32.679 -12.817 25.524 1 54.14 ? "H1'2" FMN 301 B 1 HETATM 43 H H2' FMN . . . G 2 30.669 -11.666 24.843 1 55.15 ? H2' FMN 301 B 1 HETATM 44 H HO2' FMN . . . G 2 31.682 -9.406 23.773 1 52.59 ? HO2' FMN 301 B 1 HETATM 45 H H3' FMN . . . G 2 32.74 -9.771 25.961 1 53.23 ? H3' FMN 301 B 1 HETATM 46 H HO3' FMN . . . G 2 30.925 -10.714 27.705 1 51.3 ? HO3' FMN 301 B 1 HETATM 47 H H4' FMN . . . G 2 30.781 -8.519 25.13 1 53.23 ? H4' FMN 301 B 1 HETATM 48 H HO4' FMN . . . G 2 30.238 -8.211 27.742 1 61.98 ? HO4' FMN 301 B 1 HETATM 49 H "H5'1" FMN . . . G 2 29.036 -10.274 25.382 1 53.41 ? "H5'1" FMN 301 B 1 HETATM 50 H "H5'2" FMN . . . G 2 29.171 -10.138 27.14 1 53.41 ? "H5'2" FMN 301 B 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 50 #