data_4N9Q # _model_server_result.job_id 1wNumQ5jBEKAQGziqHM38Q _model_server_result.datetime_utc '2024-11-06 22:37:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4n9q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 4N9Q # _exptl.entry_id 4N9Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 250.29 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description UBIQUINONE-1 _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4N9Q _cell.length_a 82.402 _cell.length_b 82.402 _cell.length_c 108.472 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4N9Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H18 O4' _chem_comp.formula_weight 250.29 _chem_comp.id UQ1 _chem_comp.mon_nstd_flag . _chem_comp.name UBIQUINONE-1 _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 UQ1 doub 429 n n C1 C2 UQ1 sing 430 n n C1 C6 UQ1 sing 431 n n C2 O2 UQ1 sing 432 n n C2 C3 UQ1 doub 433 n n O2 CM2 UQ1 sing 434 n n CM2 HM21 UQ1 sing 435 n n CM2 HM22 UQ1 sing 436 n n CM2 HM23 UQ1 sing 437 n n C3 O3 UQ1 sing 438 n n C3 C4 UQ1 sing 439 n n O3 CM3 UQ1 sing 440 n n CM3 HM31 UQ1 sing 441 n n CM3 HM32 UQ1 sing 442 n n CM3 HM33 UQ1 sing 443 n n C4 O4 UQ1 doub 444 n n C4 C5 UQ1 sing 445 n n C5 CM5 UQ1 sing 446 n n C5 C6 UQ1 doub 447 n n CM5 HM51 UQ1 sing 448 n n CM5 HM52 UQ1 sing 449 n n CM5 HM53 UQ1 sing 450 n n C6 C7 UQ1 sing 451 n n C7 C8 UQ1 sing 452 n n C7 H71 UQ1 sing 453 n n C7 H72 UQ1 sing 454 n n C8 C9 UQ1 doub 455 n n C8 H8 UQ1 sing 456 n n C9 C10 UQ1 sing 457 n n C9 C11 UQ1 sing 458 n n C10 H101 UQ1 sing 459 n n C10 H102 UQ1 sing 460 n n C10 H103 UQ1 sing 461 n n C11 H111 UQ1 sing 462 n n C11 H112 UQ1 sing 463 n n C11 H113 UQ1 sing 464 n n # _atom_sites.entry_id 4N9Q _atom_sites.fract_transf_matrix[1][1] 0.012136 _atom_sites.fract_transf_matrix[1][2] 0.007007 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014013 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009219 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FMN A 1 301 1213 FMN FMN . D 3 UQ1 A 1 302 1 UQ1 UQ1 . E 4 GOL A 1 303 1 GOL GOL . F 5 SO4 A 1 304 1 SO4 SO4 . G 2 FMN B 1 301 1213 FMN FMN . H 6 HOH A 1 401 1 HOH HOH . H 6 HOH A 2 402 3 HOH HOH . H 6 HOH A 3 403 5 HOH HOH . H 6 HOH A 4 404 6 HOH HOH . H 6 HOH A 5 405 7 HOH HOH . H 6 HOH A 6 406 10 HOH HOH . H 6 HOH A 7 407 11 HOH HOH . H 6 HOH A 8 408 12 HOH HOH . H 6 HOH A 9 409 13 HOH HOH . H 6 HOH A 10 410 14 HOH HOH . H 6 HOH A 11 411 16 HOH HOH . H 6 HOH A 12 412 17 HOH HOH . H 6 HOH A 13 413 19 HOH HOH . H 6 HOH A 14 414 23 HOH HOH . H 6 HOH A 15 415 26 HOH HOH . H 6 HOH A 16 416 27 HOH HOH . H 6 HOH A 17 417 28 HOH HOH . H 6 HOH A 18 418 30 HOH HOH . H 6 HOH A 19 419 31 HOH HOH . H 6 HOH A 20 420 33 HOH HOH . H 6 HOH A 21 421 34 HOH HOH . H 6 HOH A 22 422 36 HOH HOH . H 6 HOH A 23 423 38 HOH HOH . H 6 HOH A 24 424 40 HOH HOH . H 6 HOH A 25 425 41 HOH HOH . H 6 HOH A 26 426 43 HOH HOH . H 6 HOH A 27 427 46 HOH HOH . H 6 HOH A 28 428 47 HOH HOH . H 6 HOH A 29 429 54 HOH HOH . H 6 HOH A 30 430 55 HOH HOH . H 6 HOH A 31 431 56 HOH HOH . H 6 HOH A 32 432 57 HOH HOH . H 6 HOH A 33 433 58 HOH HOH . H 6 HOH A 34 434 60 HOH HOH . H 6 HOH A 35 435 61 HOH HOH . H 6 HOH A 36 436 62 HOH HOH . H 6 HOH A 37 437 64 HOH HOH . H 6 HOH A 38 438 65 HOH HOH . H 6 HOH A 39 439 66 HOH HOH . H 6 HOH A 40 440 67 HOH HOH . H 6 HOH A 41 441 69 HOH HOH . H 6 HOH A 42 442 70 HOH HOH . H 6 HOH A 43 443 71 HOH HOH . H 6 HOH A 44 444 73 HOH HOH . H 6 HOH A 45 445 75 HOH HOH . H 6 HOH A 46 446 77 HOH HOH . H 6 HOH A 47 447 82 HOH HOH . H 6 HOH A 48 448 84 HOH HOH . H 6 HOH A 49 449 85 HOH HOH . H 6 HOH A 50 450 86 HOH HOH . H 6 HOH A 51 451 87 HOH HOH . H 6 HOH A 52 452 89 HOH HOH . H 6 HOH A 53 453 92 HOH HOH . H 6 HOH A 54 454 95 HOH HOH . H 6 HOH A 55 455 96 HOH HOH . H 6 HOH A 56 456 97 HOH HOH . H 6 HOH A 57 457 99 HOH HOH . H 6 HOH A 58 458 100 HOH HOH . H 6 HOH A 59 459 101 HOH HOH . H 6 HOH A 60 460 105 HOH HOH . H 6 HOH A 61 461 106 HOH HOH . H 6 HOH A 62 462 110 HOH HOH . H 6 HOH A 63 463 111 HOH HOH . H 6 HOH A 64 464 112 HOH HOH . H 6 HOH A 65 465 117 HOH HOH . H 6 HOH A 66 466 118 HOH HOH . H 6 HOH A 67 467 120 HOH HOH . H 6 HOH A 68 468 122 HOH HOH . H 6 HOH A 69 469 128 HOH HOH . H 6 HOH A 70 470 130 HOH HOH . H 6 HOH A 71 471 137 HOH HOH . H 6 HOH A 72 472 140 HOH HOH . H 6 HOH A 73 473 143 HOH HOH . H 6 HOH A 74 474 144 HOH HOH . H 6 HOH A 75 475 146 HOH HOH . H 6 HOH A 76 476 147 HOH HOH . H 6 HOH A 77 477 148 HOH HOH . H 6 HOH A 78 478 154 HOH HOH . H 6 HOH A 79 479 156 HOH HOH . H 6 HOH A 80 480 157 HOH HOH . H 6 HOH A 81 481 162 HOH HOH . H 6 HOH A 82 482 164 HOH HOH . H 6 HOH A 83 483 169 HOH HOH . H 6 HOH A 84 484 171 HOH HOH . H 6 HOH A 85 485 174 HOH HOH . I 6 HOH B 1 401 2 HOH HOH . I 6 HOH B 2 402 4 HOH HOH . I 6 HOH B 3 403 8 HOH HOH . I 6 HOH B 4 404 9 HOH HOH . I 6 HOH B 5 405 15 HOH HOH . I 6 HOH B 6 406 18 HOH HOH . I 6 HOH B 7 407 20 HOH HOH . I 6 HOH B 8 408 21 HOH HOH . I 6 HOH B 9 409 22 HOH HOH . I 6 HOH B 10 410 24 HOH HOH . I 6 HOH B 11 411 25 HOH HOH . I 6 HOH B 12 412 29 HOH HOH . I 6 HOH B 13 413 32 HOH HOH . I 6 HOH B 14 414 35 HOH HOH . I 6 HOH B 15 415 37 HOH HOH . I 6 HOH B 16 416 39 HOH HOH . I 6 HOH B 17 417 42 HOH HOH . I 6 HOH B 18 418 44 HOH HOH . I 6 HOH B 19 419 45 HOH HOH . I 6 HOH B 20 420 48 HOH HOH . I 6 HOH B 21 421 49 HOH HOH . I 6 HOH B 22 422 50 HOH HOH . I 6 HOH B 23 423 51 HOH HOH . I 6 HOH B 24 424 52 HOH HOH . I 6 HOH B 25 425 53 HOH HOH . I 6 HOH B 26 426 59 HOH HOH . I 6 HOH B 27 427 63 HOH HOH . I 6 HOH B 28 428 68 HOH HOH . I 6 HOH B 29 429 72 HOH HOH . I 6 HOH B 30 430 74 HOH HOH . I 6 HOH B 31 431 76 HOH HOH . I 6 HOH B 32 432 78 HOH HOH . I 6 HOH B 33 433 79 HOH HOH . I 6 HOH B 34 434 80 HOH HOH . I 6 HOH B 35 435 81 HOH HOH . I 6 HOH B 36 436 83 HOH HOH . I 6 HOH B 37 437 88 HOH HOH . I 6 HOH B 38 438 90 HOH HOH . I 6 HOH B 39 439 91 HOH HOH . I 6 HOH B 40 440 93 HOH HOH . I 6 HOH B 41 441 94 HOH HOH . I 6 HOH B 42 442 98 HOH HOH . I 6 HOH B 43 443 102 HOH HOH . I 6 HOH B 44 444 103 HOH HOH . I 6 HOH B 45 445 104 HOH HOH . I 6 HOH B 46 446 107 HOH HOH . I 6 HOH B 47 447 108 HOH HOH . I 6 HOH B 48 448 109 HOH HOH . I 6 HOH B 49 449 113 HOH HOH . I 6 HOH B 50 450 114 HOH HOH . I 6 HOH B 51 451 115 HOH HOH . I 6 HOH B 52 452 116 HOH HOH . I 6 HOH B 53 453 119 HOH HOH . I 6 HOH B 54 454 121 HOH HOH . I 6 HOH B 55 455 127 HOH HOH . I 6 HOH B 56 456 133 HOH HOH . I 6 HOH B 57 457 135 HOH HOH . I 6 HOH B 58 458 138 HOH HOH . I 6 HOH B 59 459 141 HOH HOH . I 6 HOH B 60 460 145 HOH HOH . I 6 HOH B 61 461 150 HOH HOH . I 6 HOH B 62 462 151 HOH HOH . I 6 HOH B 63 463 152 HOH HOH . I 6 HOH B 64 464 153 HOH HOH . I 6 HOH B 65 465 158 HOH HOH . I 6 HOH B 66 466 159 HOH HOH . I 6 HOH B 67 467 160 HOH HOH . I 6 HOH B 68 468 161 HOH HOH . I 6 HOH B 69 469 165 HOH HOH . I 6 HOH B 70 470 167 HOH HOH . I 6 HOH B 71 471 170 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 UQ1 . . . D 3 36.609 -14.346 22.834 0.81 62.14 ? C1 UQ1 302 A 1 HETATM 2 O O1 UQ1 . . . D 3 37.007 -13.634 23.705 0.81 70.72 ? O1 UQ1 302 A 1 HETATM 3 C C2 UQ1 . . . D 3 35.547 -15.439 23.123 0.81 51.73 ? C2 UQ1 302 A 1 HETATM 4 O O2 UQ1 . . . D 3 35.039 -15.608 24.365 0.81 66.63 ? O2 UQ1 302 A 1 HETATM 5 C CM2 UQ1 . . . D 3 35.422 -14.776 25.39 0.81 59.04 ? CM2 UQ1 302 A 1 HETATM 6 C C3 UQ1 . . . D 3 35.086 -16.297 21.999 0.81 48.12 ? C3 UQ1 302 A 1 HETATM 7 O O3 UQ1 . . . D 3 34.156 -17.283 22.143 0.81 63.19 ? O3 UQ1 302 A 1 HETATM 8 C CM3 UQ1 . . . D 3 33.568 -17.524 23.351 0.81 65.01 ? CM3 UQ1 302 A 1 HETATM 9 C C4 UQ1 . . . D 3 35.659 -16.059 20.744 0.81 52.42 ? C4 UQ1 302 A 1 HETATM 10 O O4 UQ1 . . . D 3 35.29 -16.729 19.931 0.81 53.91 ? O4 UQ1 302 A 1 HETATM 11 C C5 UQ1 . . . D 3 36.647 -15.052 20.471 0.81 54.06 ? C5 UQ1 302 A 1 HETATM 12 C CM5 UQ1 . . . D 3 37.146 -14.925 19.16 0.81 60.97 ? CM5 UQ1 302 A 1 HETATM 13 C C6 UQ1 . . . D 3 37.164 -14.171 21.461 0.81 56.24 ? C6 UQ1 302 A 1 HETATM 14 C C7 UQ1 . . . D 3 38.199 -13.119 21.209 0.81 56.05 ? C7 UQ1 302 A 1 HETATM 15 C C8 UQ1 . . . D 3 39.435 -13.497 20.48 0.81 60.68 ? C8 UQ1 302 A 1 HETATM 16 C C9 UQ1 . . . D 3 40.46 -12.633 20.211 0.81 59.65 ? C9 UQ1 302 A 1 HETATM 17 C C10 UQ1 . . . D 3 41.418 -12.941 19.13 0.81 56.86 ? C10 UQ1 302 A 1 HETATM 18 C C11 UQ1 . . . D 3 40.951 -11.695 21.237 0.81 62.21 ? C11 UQ1 302 A 1 HETATM 19 H HM21 UQ1 . . . D 3 34.824 -14.887 26.151 0.81 70.84 ? HM21 UQ1 302 A 1 HETATM 20 H HM22 UQ1 . . . D 3 36.332 -14.988 25.658 0.81 70.84 ? HM22 UQ1 302 A 1 HETATM 21 H HM23 UQ1 . . . D 3 35.387 -13.855 25.077 0.81 70.84 ? HM23 UQ1 302 A 1 HETATM 22 H HM31 UQ1 . . . D 3 32.667 -17.868 23.209 0.81 78.01 ? HM31 UQ1 302 A 1 HETATM 23 H HM32 UQ1 . . . D 3 33.532 -16.694 23.856 0.81 78.01 ? HM32 UQ1 302 A 1 HETATM 24 H HM33 UQ1 . . . D 3 34.092 -18.179 23.843 0.81 78.01 ? HM33 UQ1 302 A 1 HETATM 25 H HM51 UQ1 . . . D 3 36.683 -15.54 18.565 0.81 73.17 ? HM51 UQ1 302 A 1 HETATM 26 H HM52 UQ1 . . . D 3 37.016 -14.013 18.84 0.81 73.17 ? HM52 UQ1 302 A 1 HETATM 27 H HM53 UQ1 . . . D 3 38.095 -15.137 19.168 0.81 73.17 ? HM53 UQ1 302 A 1 HETATM 28 H H71 UQ1 . . . D 3 38.464 -12.776 22.074 0.81 67.26 ? H71 UQ1 302 A 1 HETATM 29 H H72 UQ1 . . . D 3 37.787 -12.391 20.722 0.81 67.26 ? H72 UQ1 302 A 1 HETATM 30 H H8 UQ1 . . . D 3 39.527 -14.418 20.199 0.81 72.82 ? H8 UQ1 302 A 1 HETATM 31 H H101 UQ1 . . . D 3 41.372 -12.245 18.454 0.81 68.23 ? H101 UQ1 302 A 1 HETATM 32 H H102 UQ1 . . . D 3 41.201 -13.8 18.731 0.81 68.23 ? H102 UQ1 302 A 1 HETATM 33 H H103 UQ1 . . . D 3 42.318 -12.971 19.496 0.81 68.23 ? H103 UQ1 302 A 1 HETATM 34 H H111 UQ1 . . . D 3 41.815 -11.996 21.562 0.81 74.65 ? H111 UQ1 302 A 1 HETATM 35 H H112 UQ1 . . . D 3 41.051 -10.812 20.844 0.81 74.65 ? H112 UQ1 302 A 1 HETATM 36 H H113 UQ1 . . . D 3 40.319 -11.656 21.974 0.81 74.65 ? H113 UQ1 302 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 36 #