data_4N9U # _model_server_result.job_id -W8A9gRvUyjDKSSaJa3Dnw _model_server_result.datetime_utc '2024-10-19 19:35:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4n9u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 4N9U # _exptl.entry_id 4N9U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4N9U _cell.length_a 111.11 _cell.length_b 111.11 _cell.length_c 69.58 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4N9U _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 -y,-x,-z+1/2 0 -1 0 -1 0 0 0 0 -1 0 0 34.79 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 125 A ASP 103 1_555 B MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? metalc ? metalc2 A OD2 ASP 125 A ASP 103 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.93 ? metalc ? metalc3 A OD2 ASP 129 A ASP 107 1_555 B MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? metalc ? metalc4 A OD2 ASP 129 A ASP 107 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc5 A OD2 ASP 265 A ASP 243 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc6 B MG MG . A MG 401 1_555 E O12 RIS . A RIS 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc7 B MG MG . A MG 401 1_555 E O15 RIS . A RIS 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc8 B MG MG . A MG 401 1_555 H O HOH . A HOH 553 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc9 B MG MG . A MG 401 1_555 H O HOH . A HOH 554 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.881 ? metalc ? metalc10 B MG MG . A MG 401 1_555 H O HOH . A HOH 581 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.728 ? metalc ? metalc11 C MG MG . A MG 402 1_555 E O11 RIS . A RIS 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.874 ? metalc ? metalc12 C MG MG . A MG 402 1_555 E O16 RIS . A RIS 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? metalc ? metalc13 C MG MG . A MG 402 1_555 H O HOH . A HOH 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? metalc ? metalc14 C MG MG . A MG 402 1_555 H O HOH . A HOH 551 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc15 C MG MG . A MG 402 1_555 H O HOH . A HOH 552 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc16 C MG MG . A MG 402 1_555 H O HOH . A HOH 582 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.782 ? metalc ? metalc17 D MG MG . A MG 403 1_555 E O15 RIS . A RIS 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? metalc ? metalc18 D MG MG . A MG 403 1_555 H O HOH . A HOH 556 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? metalc ? metalc19 D MG MG . A MG 403 1_555 H O HOH . A HOH 557 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc20 D MG MG . A MG 403 1_555 H O HOH . A HOH 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4N9U _atom_sites.fract_transf_matrix[1][1] 0.009 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014372 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 401 907 MG MG . C 2 MG A 1 402 908 MG MG . D 2 MG A 1 403 909 MG MG . E 3 RIS A 1 404 901 RIS RIS . F 4 EDO A 1 405 1 EDO EDO . G 4 EDO A 1 406 2 EDO EDO . H 5 HOH A 1 501 3 HOH HOH . H 5 HOH A 2 502 5 HOH HOH . H 5 HOH A 3 503 6 HOH HOH . H 5 HOH A 4 504 7 HOH HOH . H 5 HOH A 5 505 8 HOH HOH . H 5 HOH A 6 506 11 HOH HOH . H 5 HOH A 7 507 13 HOH HOH . H 5 HOH A 8 508 15 HOH HOH . H 5 HOH A 9 509 16 HOH HOH . H 5 HOH A 10 510 17 HOH HOH . H 5 HOH A 11 511 19 HOH HOH . H 5 HOH A 12 512 21 HOH HOH . H 5 HOH A 13 513 22 HOH HOH . H 5 HOH A 14 514 23 HOH HOH . H 5 HOH A 15 515 24 HOH HOH . H 5 HOH A 16 516 26 HOH HOH . H 5 HOH A 17 517 28 HOH HOH . H 5 HOH A 18 518 29 HOH HOH . H 5 HOH A 19 519 30 HOH HOH . H 5 HOH A 20 520 31 HOH HOH . H 5 HOH A 21 521 33 HOH HOH . H 5 HOH A 22 522 34 HOH HOH . H 5 HOH A 23 523 35 HOH HOH . H 5 HOH A 24 524 39 HOH HOH . H 5 HOH A 25 525 41 HOH HOH . H 5 HOH A 26 526 42 HOH HOH . H 5 HOH A 27 527 43 HOH HOH . H 5 HOH A 28 528 44 HOH HOH . H 5 HOH A 29 529 45 HOH HOH . H 5 HOH A 30 530 46 HOH HOH . H 5 HOH A 31 531 53 HOH HOH . H 5 HOH A 32 532 56 HOH HOH . H 5 HOH A 33 533 59 HOH HOH . H 5 HOH A 34 534 60 HOH HOH . H 5 HOH A 35 535 64 HOH HOH . H 5 HOH A 36 536 67 HOH HOH . H 5 HOH A 37 537 71 HOH HOH . H 5 HOH A 38 538 72 HOH HOH . H 5 HOH A 39 539 79 HOH HOH . H 5 HOH A 40 540 80 HOH HOH . H 5 HOH A 41 541 82 HOH HOH . H 5 HOH A 42 542 84 HOH HOH . H 5 HOH A 43 543 88 HOH HOH . H 5 HOH A 44 544 89 HOH HOH . H 5 HOH A 45 545 92 HOH HOH . H 5 HOH A 46 546 105 HOH HOH . H 5 HOH A 47 547 106 HOH HOH . H 5 HOH A 48 548 107 HOH HOH . H 5 HOH A 49 549 109 HOH HOH . H 5 HOH A 50 550 110 HOH HOH . H 5 HOH A 51 551 111 HOH HOH . H 5 HOH A 52 552 112 HOH HOH . H 5 HOH A 53 553 113 HOH HOH . H 5 HOH A 54 554 114 HOH HOH . H 5 HOH A 55 555 115 HOH HOH . H 5 HOH A 56 556 116 HOH HOH . H 5 HOH A 57 557 117 HOH HOH . H 5 HOH A 58 558 118 HOH HOH . H 5 HOH A 59 559 119 HOH HOH . H 5 HOH A 60 560 120 HOH HOH . H 5 HOH A 61 561 121 HOH HOH . H 5 HOH A 62 562 122 HOH HOH . H 5 HOH A 63 563 123 HOH HOH . H 5 HOH A 64 564 124 HOH HOH . H 5 HOH A 65 565 128 HOH HOH . H 5 HOH A 66 566 130 HOH HOH . H 5 HOH A 67 567 131 HOH HOH . H 5 HOH A 68 568 132 HOH HOH . H 5 HOH A 69 569 133 HOH HOH . H 5 HOH A 70 570 135 HOH HOH . H 5 HOH A 71 571 136 HOH HOH . H 5 HOH A 72 572 137 HOH HOH . H 5 HOH A 73 573 138 HOH HOH . H 5 HOH A 74 574 139 HOH HOH . H 5 HOH A 75 575 140 HOH HOH . H 5 HOH A 76 576 142 HOH HOH . H 5 HOH A 77 577 143 HOH HOH . H 5 HOH A 78 578 144 HOH HOH . H 5 HOH A 79 579 145 HOH HOH . H 5 HOH A 80 580 146 HOH HOH . H 5 HOH A 81 581 148 HOH HOH . H 5 HOH A 82 582 149 HOH HOH . H 5 HOH A 83 583 150 HOH HOH . H 5 HOH A 84 584 151 HOH HOH . H 5 HOH A 85 585 152 HOH HOH . H 5 HOH A 86 586 153 HOH HOH . H 5 HOH A 87 587 156 HOH HOH . H 5 HOH A 88 588 157 HOH HOH . H 5 HOH A 89 589 158 HOH HOH . H 5 HOH A 90 590 159 HOH HOH . H 5 HOH A 91 591 160 HOH HOH . H 5 HOH A 92 592 161 HOH HOH . H 5 HOH A 93 593 162 HOH HOH . H 5 HOH A 94 594 163 HOH HOH . H 5 HOH A 95 595 164 HOH HOH . H 5 HOH A 96 596 165 HOH HOH . H 5 HOH A 97 597 166 HOH HOH . H 5 HOH A 98 598 167 HOH HOH . H 5 HOH A 99 599 168 HOH HOH . H 5 HOH A 100 600 169 HOH HOH . H 5 HOH A 101 601 170 HOH HOH . H 5 HOH A 102 602 171 HOH HOH . H 5 HOH A 103 603 172 HOH HOH . H 5 HOH A 104 604 173 HOH HOH . H 5 HOH A 105 605 174 HOH HOH . H 5 HOH A 106 606 175 HOH HOH . H 5 HOH A 107 607 176 HOH HOH . H 5 HOH A 108 608 177 HOH HOH . H 5 HOH A 109 609 178 HOH HOH . H 5 HOH A 110 610 179 HOH HOH . H 5 HOH A 111 611 180 HOH HOH . H 5 HOH A 112 612 181 HOH HOH . H 5 HOH A 113 613 182 HOH HOH . H 5 HOH A 114 614 183 HOH HOH . H 5 HOH A 115 615 184 HOH HOH . H 5 HOH A 116 616 185 HOH HOH . H 5 HOH A 117 617 186 HOH HOH . H 5 HOH A 118 618 187 HOH HOH . H 5 HOH A 119 619 188 HOH HOH . H 5 HOH A 120 620 189 HOH HOH . H 5 HOH A 121 621 190 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 32.667 _atom_site.Cartn_y -19.413 _atom_site.Cartn_z 8.084 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 34.82 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 403 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #