data_4N9U
#
_model_server_result.job_id            gSnWNDrQqdvypqvqfXO5Hw 
_model_server_result.datetime_utc      '2025-01-25 07:23:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4n9u 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":404}' 
#
_entry.id    4N9U 
#
_exptl.entry_id    4N9U 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              283.112 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '1-HYDROXY-2-(3-PYRIDINYL)ETHYLIDENE BIS-PHOSPHONIC ACID' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4N9U 
_cell.length_a            111.11 
_cell.length_b            111.11 
_cell.length_c            69.58 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4N9U 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 8_555 -y,-x,-z+1/2 0 -1 0 -1 0 0 0 0 -1 0 0 34.79 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 125 A ASP 103 1_555 B MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? 
metalc ? metalc2 A OD2 ASP 125 A ASP 103 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.93 ? 
metalc ? metalc3 A OD2 ASP 129 A ASP 107 1_555 B MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? 
metalc ? metalc4 A OD2 ASP 129 A ASP 107 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? 
metalc ? metalc5 A OD2 ASP 265 A ASP 243 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? 
metalc ? metalc6 B MG MG . A MG 401 1_555 E O12 RIS . A RIS 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
metalc ? metalc7 B MG MG . A MG 401 1_555 E O15 RIS . A RIS 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? 
metalc ? metalc8 B MG MG . A MG 401 1_555 H O HOH . A HOH 553 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? 
metalc ? metalc9 B MG MG . A MG 401 1_555 H O HOH . A HOH 554 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.881 ? 
metalc ? metalc10 B MG MG . A MG 401 1_555 H O HOH . A HOH 581 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.728 ? 
metalc ? metalc11 C MG MG . A MG 402 1_555 E O11 RIS . A RIS 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.874 ? 
metalc ? metalc12 C MG MG . A MG 402 1_555 E O16 RIS . A RIS 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? 
metalc ? metalc13 C MG MG . A MG 402 1_555 H O HOH . A HOH 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? 
metalc ? metalc14 C MG MG . A MG 402 1_555 H O HOH . A HOH 551 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? 
metalc ? metalc15 C MG MG . A MG 402 1_555 H O HOH . A HOH 552 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? 
metalc ? metalc16 C MG MG . A MG 402 1_555 H O HOH . A HOH 582 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.782 ? 
metalc ? metalc17 D MG MG . A MG 403 1_555 E O15 RIS . A RIS 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? 
metalc ? metalc18 D MG MG . A MG 403 1_555 H O HOH . A HOH 556 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? 
metalc ? metalc19 D MG MG . A MG 403 1_555 H O HOH . A HOH 557 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? 
metalc ? metalc20 D MG MG . A MG 403 1_555 H O HOH . A HOH 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
#
_chem_comp.formula           'C7 H11 N O7 P2' 
_chem_comp.formula_weight    283.112 
_chem_comp.id                RIS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '1-HYDROXY-2-(3-PYRIDINYL)ETHYLIDENE BIS-PHOSPHONIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     Risedronate 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O12 P9 RIS sing 286 n n 
O12 H12 RIS sing 287 n n 
P9 O11 RIS doub 288 n n 
P9 O10 RIS sing 289 n n 
P9 C8 RIS sing 290 n n 
C8 O13 RIS sing 291 n n 
C8 P14 RIS sing 292 n n 
C8 C7 RIS sing 293 n n 
O13 H13 RIS sing 294 n n 
P14 O16 RIS sing 295 n n 
P14 O15 RIS sing 296 n n 
P14 O17 RIS doub 297 n n 
O16 H16 RIS sing 298 n n 
O15 H15 RIS sing 299 n n 
C7 C2 RIS sing 300 n n 
C7 HC71 RIS sing 301 n n 
C7 HC72 RIS sing 302 n n 
C2 C1 RIS doub 303 n y 
C2 C3 RIS sing 304 n y 
C1 C6 RIS sing 305 n y 
C1 HC1 RIS sing 306 n n 
C6 C5 RIS doub 307 n y 
C6 HC6 RIS sing 308 n n 
C5 N4 RIS sing 309 n y 
C5 HC5 RIS sing 310 n n 
N4 C3 RIS doub 311 n y 
C3 HC3 RIS sing 312 n n 
HO1 O10 RIS sing 313 n n 
#
_atom_sites.entry_id                     4N9U 
_atom_sites.fract_transf_matrix[1][1]    0.009 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014372 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 401 907 MG MG . 
C 2 MG A 1 402 908 MG MG . 
D 2 MG A 1 403 909 MG MG . 
E 3 RIS A 1 404 901 RIS RIS . 
F 4 EDO A 1 405 1 EDO EDO . 
G 4 EDO A 1 406 2 EDO EDO . 
H 5 HOH A 1 501 3 HOH HOH . 
H 5 HOH A 2 502 5 HOH HOH . 
H 5 HOH A 3 503 6 HOH HOH . 
H 5 HOH A 4 504 7 HOH HOH . 
H 5 HOH A 5 505 8 HOH HOH . 
H 5 HOH A 6 506 11 HOH HOH . 
H 5 HOH A 7 507 13 HOH HOH . 
H 5 HOH A 8 508 15 HOH HOH . 
H 5 HOH A 9 509 16 HOH HOH . 
H 5 HOH A 10 510 17 HOH HOH . 
H 5 HOH A 11 511 19 HOH HOH . 
H 5 HOH A 12 512 21 HOH HOH . 
H 5 HOH A 13 513 22 HOH HOH . 
H 5 HOH A 14 514 23 HOH HOH . 
H 5 HOH A 15 515 24 HOH HOH . 
H 5 HOH A 16 516 26 HOH HOH . 
H 5 HOH A 17 517 28 HOH HOH . 
H 5 HOH A 18 518 29 HOH HOH . 
H 5 HOH A 19 519 30 HOH HOH . 
H 5 HOH A 20 520 31 HOH HOH . 
H 5 HOH A 21 521 33 HOH HOH . 
H 5 HOH A 22 522 34 HOH HOH . 
H 5 HOH A 23 523 35 HOH HOH . 
H 5 HOH A 24 524 39 HOH HOH . 
H 5 HOH A 25 525 41 HOH HOH . 
H 5 HOH A 26 526 42 HOH HOH . 
H 5 HOH A 27 527 43 HOH HOH . 
H 5 HOH A 28 528 44 HOH HOH . 
H 5 HOH A 29 529 45 HOH HOH . 
H 5 HOH A 30 530 46 HOH HOH . 
H 5 HOH A 31 531 53 HOH HOH . 
H 5 HOH A 32 532 56 HOH HOH . 
H 5 HOH A 33 533 59 HOH HOH . 
H 5 HOH A 34 534 60 HOH HOH . 
H 5 HOH A 35 535 64 HOH HOH . 
H 5 HOH A 36 536 67 HOH HOH . 
H 5 HOH A 37 537 71 HOH HOH . 
H 5 HOH A 38 538 72 HOH HOH . 
H 5 HOH A 39 539 79 HOH HOH . 
H 5 HOH A 40 540 80 HOH HOH . 
H 5 HOH A 41 541 82 HOH HOH . 
H 5 HOH A 42 542 84 HOH HOH . 
H 5 HOH A 43 543 88 HOH HOH . 
H 5 HOH A 44 544 89 HOH HOH . 
H 5 HOH A 45 545 92 HOH HOH . 
H 5 HOH A 46 546 105 HOH HOH . 
H 5 HOH A 47 547 106 HOH HOH . 
H 5 HOH A 48 548 107 HOH HOH . 
H 5 HOH A 49 549 109 HOH HOH . 
H 5 HOH A 50 550 110 HOH HOH . 
H 5 HOH A 51 551 111 HOH HOH . 
H 5 HOH A 52 552 112 HOH HOH . 
H 5 HOH A 53 553 113 HOH HOH . 
H 5 HOH A 54 554 114 HOH HOH . 
H 5 HOH A 55 555 115 HOH HOH . 
H 5 HOH A 56 556 116 HOH HOH . 
H 5 HOH A 57 557 117 HOH HOH . 
H 5 HOH A 58 558 118 HOH HOH . 
H 5 HOH A 59 559 119 HOH HOH . 
H 5 HOH A 60 560 120 HOH HOH . 
H 5 HOH A 61 561 121 HOH HOH . 
H 5 HOH A 62 562 122 HOH HOH . 
H 5 HOH A 63 563 123 HOH HOH . 
H 5 HOH A 64 564 124 HOH HOH . 
H 5 HOH A 65 565 128 HOH HOH . 
H 5 HOH A 66 566 130 HOH HOH . 
H 5 HOH A 67 567 131 HOH HOH . 
H 5 HOH A 68 568 132 HOH HOH . 
H 5 HOH A 69 569 133 HOH HOH . 
H 5 HOH A 70 570 135 HOH HOH . 
H 5 HOH A 71 571 136 HOH HOH . 
H 5 HOH A 72 572 137 HOH HOH . 
H 5 HOH A 73 573 138 HOH HOH . 
H 5 HOH A 74 574 139 HOH HOH . 
H 5 HOH A 75 575 140 HOH HOH . 
H 5 HOH A 76 576 142 HOH HOH . 
H 5 HOH A 77 577 143 HOH HOH . 
H 5 HOH A 78 578 144 HOH HOH . 
H 5 HOH A 79 579 145 HOH HOH . 
H 5 HOH A 80 580 146 HOH HOH . 
H 5 HOH A 81 581 148 HOH HOH . 
H 5 HOH A 82 582 149 HOH HOH . 
H 5 HOH A 83 583 150 HOH HOH . 
H 5 HOH A 84 584 151 HOH HOH . 
H 5 HOH A 85 585 152 HOH HOH . 
H 5 HOH A 86 586 153 HOH HOH . 
H 5 HOH A 87 587 156 HOH HOH . 
H 5 HOH A 88 588 157 HOH HOH . 
H 5 HOH A 89 589 158 HOH HOH . 
H 5 HOH A 90 590 159 HOH HOH . 
H 5 HOH A 91 591 160 HOH HOH . 
H 5 HOH A 92 592 161 HOH HOH . 
H 5 HOH A 93 593 162 HOH HOH . 
H 5 HOH A 94 594 163 HOH HOH . 
H 5 HOH A 95 595 164 HOH HOH . 
H 5 HOH A 96 596 165 HOH HOH . 
H 5 HOH A 97 597 166 HOH HOH . 
H 5 HOH A 98 598 167 HOH HOH . 
H 5 HOH A 99 599 168 HOH HOH . 
H 5 HOH A 100 600 169 HOH HOH . 
H 5 HOH A 101 601 170 HOH HOH . 
H 5 HOH A 102 602 171 HOH HOH . 
H 5 HOH A 103 603 172 HOH HOH . 
H 5 HOH A 104 604 173 HOH HOH . 
H 5 HOH A 105 605 174 HOH HOH . 
H 5 HOH A 106 606 175 HOH HOH . 
H 5 HOH A 107 607 176 HOH HOH . 
H 5 HOH A 108 608 177 HOH HOH . 
H 5 HOH A 109 609 178 HOH HOH . 
H 5 HOH A 110 610 179 HOH HOH . 
H 5 HOH A 111 611 180 HOH HOH . 
H 5 HOH A 112 612 181 HOH HOH . 
H 5 HOH A 113 613 182 HOH HOH . 
H 5 HOH A 114 614 183 HOH HOH . 
H 5 HOH A 115 615 184 HOH HOH . 
H 5 HOH A 116 616 185 HOH HOH . 
H 5 HOH A 117 617 186 HOH HOH . 
H 5 HOH A 118 618 187 HOH HOH . 
H 5 HOH A 119 619 188 HOH HOH . 
H 5 HOH A 120 620 189 HOH HOH . 
H 5 HOH A 121 621 190 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O12 RIS . . . E 3 35.897 -16.893 10.363 1 48.68 ? O12 RIS 404 A 1 
HETATM 2 P P9 RIS . . . E 3 35.841 -15.394 9.886 1 46.15 ? P9 RIS 404 A 1 
HETATM 3 O O11 RIS . . . E 3 37.124 -15.066 9.13 1 45.11 ? O11 RIS 404 A 1 
HETATM 4 O O10 RIS . . . E 3 35.72 -14.483 11.098 1 41.02 ? O10 RIS 404 A 1 
HETATM 5 C C8 RIS . . . E 3 34.26 -15.085 8.878 1 47.32 ? C8 RIS 404 A 1 
HETATM 6 O O13 RIS . . . E 3 34.364 -13.857 8.268 1 44.1 ? O13 RIS 404 A 1 
HETATM 7 P P14 RIS . . . E 3 34.133 -16.399 7.577 1 50.91 ? P14 RIS 404 A 1 
HETATM 8 O O16 RIS . . . E 3 35.418 -16.285 6.664 1 48.6 ? O16 RIS 404 A 1 
HETATM 9 O O15 RIS . . . E 3 34.028 -17.816 8.229 1 43.31 ? O15 RIS 404 A 1 
HETATM 10 O O17 RIS . . . E 3 32.964 -16.131 6.651 1 48.44 ? O17 RIS 404 A 1 
HETATM 11 C C7 RIS . . . E 3 33.062 -15.126 9.86 1 44.68 ? C7 RIS 404 A 1 
HETATM 12 C C2 RIS . . . E 3 31.645 -14.977 9.399 1 46.69 ? C2 RIS 404 A 1 
HETATM 13 C C1 RIS . . . E 3 30.619 -15.619 10.185 1 46.06 ? C1 RIS 404 A 1 
HETATM 14 C C6 RIS . . . E 3 29.276 -15.536 9.765 1 42.25 ? C6 RIS 404 A 1 
HETATM 15 C C5 RIS . . . E 3 28.984 -14.841 8.616 1 41.88 ? C5 RIS 404 A 1 
HETATM 16 N N4 RIS . . . E 3 29.987 -14.18 7.935 1 46.43 ? N4 RIS 404 A 1 
HETATM 17 C C3 RIS . . . E 3 31.295 -14.219 8.292 1 43.47 ? C3 RIS 404 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           446 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           17 
#