data_4NA9 # _model_server_result.job_id zCV2U92fu1jYnDqZqTeZ6g _model_server_result.datetime_utc '2024-11-01 02:39:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4na9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 4NA9 # _exptl.entry_id 4NA9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4NA9 _cell.length_a 95.21 _cell.length_b 95.21 _cell.length_c 115.71 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4NA9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 H CYS 22 1_555 A SG CYS 12 H CYS 27 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.037 ? disulf ? disulf2 A SG CYS 26 H CYS 42 1_555 A SG CYS 42 H CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf3 A SG CYS 110 H CYS 122 1_555 B SG CYS 46 L CYS 135 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.034 ? disulf ? disulf4 A SG CYS 158 H CYS 168 1_555 A SG CYS 177 H CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf5 A SG CYS 188 H CYS 191 1_555 A SG CYS 216 H CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf6 B SG CYS 2 L CYS 91 1_555 B SG CYS 13 L CYS 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf7 B SG CYS 9 L CYS 98 1_555 B SG CYS 23 L CYS 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? disulf ? disulf8 B SG CYS 25 L CYS 114 1_555 B SG CYS 38 L CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc1 A OE1 GLU 58 H GLU 70 1_555 D CA CA . H CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc2 A O ASP 60 H ASP 72 1_555 D CA CA . H CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc3 A O GLU 63 H GLU 75 1_555 D CA CA . H CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc4 A OE1 GLU 68 H GLU 80 1_555 D CA CA . H CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? metalc ? metalc5 D CA CA . H CA 302 1_555 E O HOH . H HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc6 D CA CA . H CA 302 1_555 E O HOH . H HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4NA9 _atom_sites.fract_transf_matrix[1][1] 0.010503 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010503 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008642 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 1T7 H 1 301 1 1T7 1T7 . D 4 CA H 1 302 1 CA CA . E 5 HOH H 1 401 1 HOH HOH . E 5 HOH H 2 402 2 HOH HOH . E 5 HOH H 3 403 3 HOH HOH . E 5 HOH H 4 404 4 HOH HOH . E 5 HOH H 5 405 5 HOH HOH . E 5 HOH H 6 406 6 HOH HOH . E 5 HOH H 7 407 7 HOH HOH . E 5 HOH H 8 408 9 HOH HOH . E 5 HOH H 9 409 10 HOH HOH . E 5 HOH H 10 410 11 HOH HOH . E 5 HOH H 11 411 12 HOH HOH . E 5 HOH H 12 412 13 HOH HOH . E 5 HOH H 13 413 14 HOH HOH . E 5 HOH H 14 414 15 HOH HOH . E 5 HOH H 15 415 17 HOH HOH . E 5 HOH H 16 416 19 HOH HOH . E 5 HOH H 17 417 20 HOH HOH . E 5 HOH H 18 418 21 HOH HOH . E 5 HOH H 19 419 22 HOH HOH . E 5 HOH H 20 420 23 HOH HOH . E 5 HOH H 21 421 24 HOH HOH . E 5 HOH H 22 422 25 HOH HOH . E 5 HOH H 23 423 26 HOH HOH . E 5 HOH H 24 424 28 HOH HOH . E 5 HOH H 25 425 29 HOH HOH . E 5 HOH H 26 426 30 HOH HOH . E 5 HOH H 27 427 31 HOH HOH . E 5 HOH H 28 428 32 HOH HOH . E 5 HOH H 29 429 34 HOH HOH . E 5 HOH H 30 430 35 HOH HOH . E 5 HOH H 31 431 38 HOH HOH . E 5 HOH H 32 432 39 HOH HOH . E 5 HOH H 33 433 40 HOH HOH . E 5 HOH H 34 434 41 HOH HOH . E 5 HOH H 35 435 42 HOH HOH . E 5 HOH H 36 436 43 HOH HOH . E 5 HOH H 37 437 44 HOH HOH . E 5 HOH H 38 438 45 HOH HOH . E 5 HOH H 39 439 46 HOH HOH . E 5 HOH H 40 440 47 HOH HOH . E 5 HOH H 41 441 48 HOH HOH . E 5 HOH H 42 442 49 HOH HOH . E 5 HOH H 43 443 50 HOH HOH . E 5 HOH H 44 444 51 HOH HOH . E 5 HOH H 45 445 54 HOH HOH . E 5 HOH H 46 446 56 HOH HOH . E 5 HOH H 47 447 57 HOH HOH . E 5 HOH H 48 448 58 HOH HOH . E 5 HOH H 49 449 59 HOH HOH . E 5 HOH H 50 450 60 HOH HOH . E 5 HOH H 51 451 61 HOH HOH . E 5 HOH H 52 452 62 HOH HOH . E 5 HOH H 53 453 64 HOH HOH . E 5 HOH H 54 454 65 HOH HOH . E 5 HOH H 55 455 66 HOH HOH . E 5 HOH H 56 456 68 HOH HOH . E 5 HOH H 57 457 69 HOH HOH . E 5 HOH H 58 458 71 HOH HOH . E 5 HOH H 59 459 73 HOH HOH . E 5 HOH H 60 460 74 HOH HOH . E 5 HOH H 61 461 75 HOH HOH . E 5 HOH H 62 462 78 HOH HOH . E 5 HOH H 63 463 79 HOH HOH . E 5 HOH H 64 464 80 HOH HOH . E 5 HOH H 65 465 81 HOH HOH . E 5 HOH H 66 466 83 HOH HOH . E 5 HOH H 67 467 84 HOH HOH . E 5 HOH H 68 468 85 HOH HOH . E 5 HOH H 69 469 86 HOH HOH . E 5 HOH H 70 470 87 HOH HOH . E 5 HOH H 71 471 88 HOH HOH . E 5 HOH H 72 472 89 HOH HOH . E 5 HOH H 73 473 91 HOH HOH . E 5 HOH H 74 474 92 HOH HOH . E 5 HOH H 75 475 93 HOH HOH . E 5 HOH H 76 476 95 HOH HOH . E 5 HOH H 77 477 96 HOH HOH . E 5 HOH H 78 478 97 HOH HOH . E 5 HOH H 79 479 98 HOH HOH . E 5 HOH H 80 480 99 HOH HOH . E 5 HOH H 81 481 100 HOH HOH . E 5 HOH H 82 482 101 HOH HOH . E 5 HOH H 83 483 102 HOH HOH . E 5 HOH H 84 484 104 HOH HOH . E 5 HOH H 85 485 105 HOH HOH . E 5 HOH H 86 486 108 HOH HOH . E 5 HOH H 87 487 109 HOH HOH . E 5 HOH H 88 488 110 HOH HOH . E 5 HOH H 89 489 111 HOH HOH . E 5 HOH H 90 490 112 HOH HOH . E 5 HOH H 91 491 113 HOH HOH . E 5 HOH H 92 492 114 HOH HOH . E 5 HOH H 93 493 115 HOH HOH . E 5 HOH H 94 494 116 HOH HOH . E 5 HOH H 95 495 118 HOH HOH . E 5 HOH H 96 496 119 HOH HOH . E 5 HOH H 97 497 120 HOH HOH . E 5 HOH H 98 498 122 HOH HOH . E 5 HOH H 99 499 123 HOH HOH . E 5 HOH H 100 500 124 HOH HOH . E 5 HOH H 101 501 126 HOH HOH . E 5 HOH H 102 502 127 HOH HOH . E 5 HOH H 103 503 128 HOH HOH . E 5 HOH H 104 504 129 HOH HOH . E 5 HOH H 105 505 130 HOH HOH . E 5 HOH H 106 506 131 HOH HOH . E 5 HOH H 107 507 132 HOH HOH . E 5 HOH H 108 508 134 HOH HOH . E 5 HOH H 109 509 138 HOH HOH . E 5 HOH H 110 510 139 HOH HOH . E 5 HOH H 111 511 140 HOH HOH . E 5 HOH H 112 512 142 HOH HOH . E 5 HOH H 113 513 143 HOH HOH . E 5 HOH H 114 514 144 HOH HOH . E 5 HOH H 115 515 146 HOH HOH . E 5 HOH H 116 516 147 HOH HOH . E 5 HOH H 117 517 148 HOH HOH . E 5 HOH H 118 518 149 HOH HOH . E 5 HOH H 119 519 150 HOH HOH . E 5 HOH H 120 520 151 HOH HOH . E 5 HOH H 121 521 152 HOH HOH . E 5 HOH H 122 522 154 HOH HOH . E 5 HOH H 123 523 155 HOH HOH . E 5 HOH H 124 524 156 HOH HOH . E 5 HOH H 125 525 158 HOH HOH . E 5 HOH H 126 526 159 HOH HOH . E 5 HOH H 127 527 160 HOH HOH . E 5 HOH H 128 528 162 HOH HOH . E 5 HOH H 129 529 163 HOH HOH . E 5 HOH H 130 530 164 HOH HOH . E 5 HOH H 131 531 165 HOH HOH . E 5 HOH H 132 532 166 HOH HOH . E 5 HOH H 133 533 167 HOH HOH . E 5 HOH H 134 534 168 HOH HOH . E 5 HOH H 135 535 169 HOH HOH . E 5 HOH H 136 536 171 HOH HOH . E 5 HOH H 137 537 172 HOH HOH . E 5 HOH H 138 538 173 HOH HOH . E 5 HOH H 139 539 174 HOH HOH . E 5 HOH H 140 540 175 HOH HOH . E 5 HOH H 141 541 176 HOH HOH . E 5 HOH H 142 542 177 HOH HOH . F 5 HOH L 1 201 8 HOH HOH . F 5 HOH L 2 202 16 HOH HOH . F 5 HOH L 3 203 18 HOH HOH . F 5 HOH L 4 204 27 HOH HOH . F 5 HOH L 5 205 33 HOH HOH . F 5 HOH L 6 206 36 HOH HOH . F 5 HOH L 7 207 37 HOH HOH . F 5 HOH L 8 208 52 HOH HOH . F 5 HOH L 9 209 53 HOH HOH . F 5 HOH L 10 210 55 HOH HOH . F 5 HOH L 11 211 63 HOH HOH . F 5 HOH L 12 212 67 HOH HOH . F 5 HOH L 13 213 70 HOH HOH . F 5 HOH L 14 214 72 HOH HOH . F 5 HOH L 15 215 76 HOH HOH . F 5 HOH L 16 216 77 HOH HOH . F 5 HOH L 17 217 82 HOH HOH . F 5 HOH L 18 218 90 HOH HOH . F 5 HOH L 19 219 94 HOH HOH . F 5 HOH L 20 220 103 HOH HOH . F 5 HOH L 21 221 106 HOH HOH . F 5 HOH L 22 222 107 HOH HOH . F 5 HOH L 23 223 117 HOH HOH . F 5 HOH L 24 224 121 HOH HOH . F 5 HOH L 25 225 125 HOH HOH . F 5 HOH L 26 226 133 HOH HOH . F 5 HOH L 27 227 135 HOH HOH . F 5 HOH L 28 228 136 HOH HOH . F 5 HOH L 29 229 137 HOH HOH . F 5 HOH L 30 230 141 HOH HOH . F 5 HOH L 31 231 145 HOH HOH . F 5 HOH L 32 232 153 HOH HOH . F 5 HOH L 33 233 157 HOH HOH . F 5 HOH L 34 234 161 HOH HOH . F 5 HOH L 35 235 170 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 29.807 _atom_site.Cartn_y 37.809 _atom_site.Cartn_z 15.643 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 22.7 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 302 _atom_site.auth_asym_id H _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #