data_4NAB # _model_server_result.job_id vuRHQRFMs7ZEuYQ6wayEwg _model_server_result.datetime_utc '2024-11-28 04:58:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4nab # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1103}' # _entry.id 4NAB # _exptl.entry_id 4NAB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 787.121 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.29 _cell.angle_gamma 90 _cell.entry_id 4NAB _cell.length_a 167.01 _cell.length_b 55.79 _cell.length_c 161.79 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4NAB _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 876 A CYS 876 1_555 A SG CYS 888 A CYS 888 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? metalc ? metalc1 A O VAL 304 A VAL 304 1_555 B CA CA . A CA 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.475 ? metalc ? metalc2 A O ALA 305 A ALA 305 1_555 B CA CA . A CA 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.986 ? metalc ? metalc3 A O ILE 307 A ILE 307 1_555 B CA CA . A CA 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? metalc ? metalc4 A OE1 GLN 309 A GLN 309 1_555 B CA CA . A CA 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? metalc ? metalc5 A O LEU 711 A LEU 711 1_555 E K K . A K 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.739 ? metalc ? metalc6 A O LYS 712 A LYS 712 1_555 E K K . A K 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.281 ? metalc ? metalc7 A O ALA 714 A ALA 714 1_555 E K K . A K 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.669 ? metalc ? metalc8 A OE1 GLU 732 A GLU 732 1_555 E K K . A K 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.789 ? metalc ? metalc9 A OE2 GLU 732 A GLU 732 1_555 E K K . A K 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.793 ? metalc ? metalc10 A OD1 ASN 768 A ASN 768 1_555 C CA CA . A CA 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? metalc ? metalc11 A OE1 GLU 771 A GLU 771 1_555 C CA CA . A CA 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc12 A OD1 ASN 796 A ASN 796 1_555 B CA CA . A CA 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc13 A OG1 THR 799 A THR 799 1_555 C CA CA . A CA 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc14 A OD2 ASP 800 A ASP 800 1_555 B CA CA . A CA 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc15 A OD1 ASP 800 A ASP 800 1_555 C CA CA . A CA 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc16 A OE1 GLU 908 A GLU 908 1_555 C CA CA . A CA 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? metalc ? metalc17 C CA CA . A CA 1102 1_555 F O HOH . A HOH 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? metalc ? metalc18 E K K . A K 1104 1_555 F O HOH . A HOH 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.827 ? # _chem_comp.formula 'C44 H85 N O8 P 1' _chem_comp.formula_weight 787.121 _chem_comp.id PCW _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (Z,Z)-4-HYDROXY-N,N,N-TRIMETHYL-10-OXO-7-[(1-OXO-9-OCTADECENYL)OXY]-3,5,9-TRIOXA-4-PHOSPHAHEPTACOS-18-EN-1-AMINIUM-4-OXIDE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 PCW sing 237 n n C1 O3P PCW sing 238 n n C1 H11 PCW sing 239 n n C1 H12 PCW sing 240 n n C2 C3 PCW sing 241 n n C2 O2 PCW sing 242 n n C2 H2 PCW sing 243 n n C3 O3 PCW sing 244 n n C3 H31 PCW sing 245 n n C3 H32 PCW sing 246 n n C4 C5 PCW sing 247 n n C4 O4P PCW sing 248 n n C4 H41 PCW sing 249 n n C4 H42 PCW sing 250 n n C5 N PCW sing 251 n n C5 H51 PCW sing 252 n n C5 H52 PCW sing 253 n n C6 N PCW sing 254 n n C6 H61 PCW sing 255 n n C6 H62 PCW sing 256 n n C6 H63 PCW sing 257 n n C7 N PCW sing 258 n n C7 H71 PCW sing 259 n n C7 H72 PCW sing 260 n n C7 H73 PCW sing 261 n n C8 N PCW sing 262 n n C8 H81 PCW sing 263 n n C8 H82 PCW sing 264 n n C8 H83 PCW sing 265 n n C11 C12 PCW sing 266 n n C11 O3 PCW sing 267 n n C11 O11 PCW doub 268 n n C12 C13 PCW sing 269 n n C12 H121 PCW sing 270 n n C12 H122 PCW sing 271 n n C13 C14 PCW sing 272 n n C13 H131 PCW sing 273 n n C13 H132 PCW sing 274 n n C14 C15 PCW sing 275 n n C14 H141 PCW sing 276 n n C14 H142 PCW sing 277 n n C15 C16 PCW sing 278 n n C15 H151 PCW sing 279 n n C15 H152 PCW sing 280 n n C16 C17 PCW sing 281 n n C16 H161 PCW sing 282 n n C16 H162 PCW sing 283 n n C17 C18 PCW sing 284 n n C17 H171 PCW sing 285 n n C17 H172 PCW sing 286 n n C18 C19 PCW sing 287 n n C18 H181 PCW sing 288 n n C18 H182 PCW sing 289 n n C19 C20 PCW doub 290 z n C19 H19 PCW sing 291 n n C20 C21 PCW sing 292 n n C20 H20 PCW sing 293 n n C21 C22 PCW sing 294 n n C21 H211 PCW sing 295 n n C21 H212 PCW sing 296 n n C22 C23 PCW sing 297 n n C22 H221 PCW sing 298 n n C22 H222 PCW sing 299 n n C23 C24 PCW sing 300 n n C23 H231 PCW sing 301 n n C23 H232 PCW sing 302 n n C24 C25 PCW sing 303 n n C24 H241 PCW sing 304 n n C24 H242 PCW sing 305 n n C25 C26 PCW sing 306 n n C25 H251 PCW sing 307 n n C25 H252 PCW sing 308 n n C26 C27 PCW sing 309 n n C26 H261 PCW sing 310 n n C26 H262 PCW sing 311 n n C27 C28 PCW sing 312 n n C27 H271 PCW sing 313 n n C27 H272 PCW sing 314 n n C28 H281 PCW sing 315 n n C28 H282 PCW sing 316 n n C28 H283 PCW sing 317 n n C31 C32 PCW sing 318 n n C31 O2 PCW sing 319 n n C31 O31 PCW doub 320 n n C32 C33 PCW sing 321 n n C32 H321 PCW sing 322 n n C32 H322 PCW sing 323 n n C33 C34 PCW sing 324 n n C33 H331 PCW sing 325 n n C33 H332 PCW sing 326 n n C34 C35 PCW sing 327 n n C34 H341 PCW sing 328 n n C34 H342 PCW sing 329 n n C35 C36 PCW sing 330 n n C35 H351 PCW sing 331 n n C35 H352 PCW sing 332 n n C36 C37 PCW sing 333 n n C36 H361 PCW sing 334 n n C36 H362 PCW sing 335 n n C37 C38 PCW sing 336 n n C37 H371 PCW sing 337 n n C37 H372 PCW sing 338 n n C38 C39 PCW sing 339 n n C38 H381 PCW sing 340 n n C38 H382 PCW sing 341 n n C39 C40 PCW doub 342 z n C39 H39 PCW sing 343 n n C40 C41 PCW sing 344 n n C40 H40 PCW sing 345 n n C41 C42 PCW sing 346 n n C41 H411 PCW sing 347 n n C41 H412 PCW sing 348 n n C42 C43 PCW sing 349 n n C42 H421 PCW sing 350 n n C42 H422 PCW sing 351 n n C43 C44 PCW sing 352 n n C43 H431 PCW sing 353 n n C43 H432 PCW sing 354 n n C44 C45 PCW sing 355 n n C44 H441 PCW sing 356 n n C44 H442 PCW sing 357 n n C45 C46 PCW sing 358 n n C45 H451 PCW sing 359 n n C45 H452 PCW sing 360 n n C46 C47 PCW sing 361 n n C46 H461 PCW sing 362 n n C46 H462 PCW sing 363 n n C47 C48 PCW sing 364 n n C47 H471 PCW sing 365 n n C47 H472 PCW sing 366 n n C48 H481 PCW sing 367 n n C48 H482 PCW sing 368 n n C48 H483 PCW sing 369 n n O1P P PCW sing 370 n n O1P H1P PCW sing 371 n n O2P P PCW doub 372 n n O3P P PCW sing 373 n n O4P P PCW sing 374 n n # _atom_sites.entry_id 4NAB _atom_sites.fract_transf_matrix[1][1] 0.005988 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002096 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017924 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006548 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 1101 1101 CA CA . C 2 CA A 1 1102 1102 CA CA . D 3 PCW A 1 1103 1103 PCW PCW . E 4 K A 1 1104 1104 K K . F 5 HOH A 1 1201 1201 HOH HOH . F 5 HOH A 2 1202 1202 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PCW . . . D 3 -48.449 -1.326 10.525 1 60.13 ? C1 PCW 1103 A 1 HETATM 2 C C2 PCW . . . D 3 -48.388 -0.203 9.44 1 104.23 ? C2 PCW 1103 A 1 HETATM 3 C C3 PCW . . . D 3 -47.536 0.989 9.947 1 93.61 ? C3 PCW 1103 A 1 HETATM 4 C C4 PCW . . . D 3 -51.143 -2.292 12.928 1 82.82 ? C4 PCW 1103 A 1 HETATM 5 C C5 PCW . . . D 3 -52.203 -1.805 13.949 1 86.87 ? C5 PCW 1103 A 1 HETATM 6 C C6 PCW . . . D 3 -53.88 -3.304 12.877 1 85.81 ? C6 PCW 1103 A 1 HETATM 7 C C7 PCW . . . D 3 -53.74 -0.906 12.207 1 84.91 ? C7 PCW 1103 A 1 HETATM 8 C C8 PCW . . . D 3 -54.617 -1.511 14.456 1 91.33 ? C8 PCW 1103 A 1 HETATM 9 C C11 PCW . . . D 3 -46.628 2.816 8.794 1 103.81 ? C11 PCW 1103 A 1 HETATM 10 C C12 PCW . . . D 3 -47.309 3.596 7.653 1 110.2 ? C12 PCW 1103 A 1 HETATM 11 C C13 PCW . . . D 3 -47.769 2.8 6.411 1 111.17 ? C13 PCW 1103 A 1 HETATM 12 C C14 PCW . . . D 3 -47.123 3.335 5.106 1 114.85 ? C14 PCW 1103 A 1 HETATM 13 C C15 PCW . . . D 3 -46.207 2.287 4.404 1 121.6 ? C15 PCW 1103 A 1 HETATM 14 C C16 PCW . . . D 3 -44.724 2.714 4.263 1 124.81 ? C16 PCW 1103 A 1 HETATM 15 C C17 PCW . . . D 3 -43.734 1.58 4.664 1 128.39 ? C17 PCW 1103 A 1 HETATM 16 C C18 PCW . . . D 3 -42.525 1.448 3.704 1 131.73 ? C18 PCW 1103 A 1 HETATM 17 C C19 PCW . . . D 3 -41.35 0.672 4.243 1 133.78 ? C19 PCW 1103 A 1 HETATM 18 C C20 PCW . . . D 3 -40.367 0.101 3.439 1 135.13 ? C20 PCW 1103 A 1 HETATM 19 C C21 PCW . . . D 3 -40.35 0.186 1.911 1 132.35 ? C21 PCW 1103 A 1 HETATM 20 C C22 PCW . . . D 3 -40.034 -1.135 1.119 1 127.14 ? C22 PCW 1103 A 1 HETATM 21 C C23 PCW . . . D 3 -39.216 -0.894 -0.181 1 120.6 ? C23 PCW 1103 A 1 HETATM 22 C C24 PCW . . . D 3 -39.728 -1.686 -1.42 1 117.5 ? C24 PCW 1103 A 1 HETATM 23 C C25 PCW . . . D 3 -39.043 -1.264 -2.76 1 113.86 ? C25 PCW 1103 A 1 HETATM 24 C C26 PCW . . . D 3 -39.791 -1.738 -4.036 1 108.48 ? C26 PCW 1103 A 1 HETATM 25 C C27 PCW . . . D 3 -38.844 -1.878 -5.247 1 101.97 ? C27 PCW 1103 A 1 HETATM 26 C C28 PCW . . . D 3 -39.145 -0.871 -6.342 1 97.58 ? C28 PCW 1103 A 1 HETATM 27 C C31 PCW . . . D 3 -46.623 -1.456 8.217 1 105.58 ? C31 PCW 1103 A 1 HETATM 28 C C32 PCW . . . D 3 -46.564 -2.372 6.986 1 103.3 ? C32 PCW 1103 A 1 HETATM 29 C C33 PCW . . . D 3 -45.387 -2.082 6.031 1 102.2 ? C33 PCW 1103 A 1 HETATM 30 C C34 PCW . . . D 3 -45.308 -3.017 4.779 1 105.54 ? C34 PCW 1103 A 1 HETATM 31 C C35 PCW . . . D 3 -45.007 -2.257 3.44 1 106.5 ? C35 PCW 1103 A 1 HETATM 32 C C36 PCW . . . D 3 -44.298 -3.068 2.293 1 54.07 ? C36 PCW 1103 A 1 HETATM 33 C C37 PCW . . . D 3 -45.136 -4.212 1.668 1 127.33 ? C37 PCW 1103 A 1 HETATM 34 C C38 PCW . . . D 3 -45.15 -4.266 0.118 1 102.62 ? C38 PCW 1103 A 1 HETATM 35 C C39 PCW . . . D 3 -45.253 -5.653 -0.472 1 101.72 ? C39 PCW 1103 A 1 HETATM 36 C C40 PCW . . . D 3 -44.175 -6.41 -0.918 1 96.43 ? C40 PCW 1103 A 1 HETATM 37 C C41 PCW . . . D 3 -42.711 -5.972 -0.901 1 84.73 ? C41 PCW 1103 A 1 HETATM 38 C C42 PCW . . . D 3 -41.654 -7.045 -0.557 1 73.23 ? C42 PCW 1103 A 1 HETATM 39 C C43 PCW . . . D 3 -42.024 -8.451 -1.058 1 65.97 ? C43 PCW 1103 A 1 HETATM 40 C C44 PCW . . . D 3 -40.974 -9.536 -0.752 1 65.6 ? C44 PCW 1103 A 1 HETATM 41 C C45 PCW . . . D 3 -41.618 -10.902 -0.487 1 73.23 ? C45 PCW 1103 A 1 HETATM 42 C C46 PCW . . . D 3 -43.02 -10.768 0.166 1 83.6 ? C46 PCW 1103 A 1 HETATM 43 C C47 PCW . . . D 3 -43.704 -12.137 0.47 1 86.69 ? C47 PCW 1103 A 1 HETATM 44 C C48 PCW . . . D 3 -44.93 -12.034 1.4 1 83.87 ? C48 PCW 1103 A 1 HETATM 45 N N PCW . . . D 3 -53.607 -1.875 13.371 1 87.5 1 N PCW 1103 A 1 HETATM 46 O O2 PCW . . . D 3 -47.742 -0.654 8.232 1 105.77 ? O2 PCW 1103 A 1 HETATM 47 O O3 PCW . . . D 3 -46.904 1.494 8.792 1 96.98 ? O3 PCW 1103 A 1 HETATM 48 O O11 PCW . . . D 3 -46.217 3.325 9.831 1 102.12 ? O11 PCW 1103 A 1 HETATM 49 O O31 PCW . . . D 3 -45.666 -1.179 8.919 1 106.28 ? O31 PCW 1103 A 1 HETATM 50 O O1P PCW . . . D 3 -48.523 -2.433 13.669 1 60.73 ? O1P PCW 1103 A 1 HETATM 51 O O2P PCW . . . D 3 -48.858 0.098 13.973 1 66.11 ? O2P PCW 1103 A 1 HETATM 52 O O3P PCW . . . D 3 -48.103 -0.777 11.762 1 62.22 ? O3P PCW 1103 A 1 HETATM 53 O O4P PCW . . . D 3 -50.47 -1.178 12.598 1 83.93 ? O4P PCW 1103 A 1 HETATM 54 P P PCW . . . D 3 -48.983 -1.073 13.025 1 65.25 ? P PCW 1103 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 54 #