data_4NAE
#
_model_server_result.job_id            R7hhAoTiNumjt5R9Ti2SiA 
_model_server_result.datetime_utc      '2024-11-13 01:43:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4nae 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":301}' 
#
_entry.id    4NAE 
#
_exptl.entry_id    4NAE 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              172.074 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            SN-GLYCEROL-1-PHOSPHATE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4NAE 
_cell.length_a            85.35 
_cell.length_b            157.97 
_cell.length_c            38.09 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4NAE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 E N N 
#
_chem_comp.formula           'C3 H9 O6 P' 
_chem_comp.formula_weight    172.074 
_chem_comp.id                1GP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              SN-GLYCEROL-1-PHOSPHATE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C3 C2 1GP sing 1 n n 
C3 O2 1GP sing 2 n n 
C3 H31 1GP sing 3 n n 
C3 H32 1GP sing 4 n n 
O3 C2 1GP sing 5 n n 
O3 HO3 1GP sing 6 n n 
C2 C1 1GP sing 7 n n 
C2 H2 1GP sing 8 n n 
O2 HO2 1GP sing 9 n n 
C1 O1P 1GP sing 10 n n 
C1 H11 1GP sing 11 n n 
C1 H12 1GP sing 12 n n 
O1P P 1GP sing 13 n n 
O2P P 1GP doub 14 n n 
O3P P 1GP sing 15 n n 
O3P HO3P 1GP sing 16 n n 
O4P P 1GP sing 17 n n 
O4P HO4P 1GP sing 18 n n 
#
_atom_sites.entry_id                     4NAE 
_atom_sites.fract_transf_matrix[1][1]    0.011716 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00633 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.026254 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 1GP A 1 301 1 1GP 1GP . 
D 4 PE4 A 1 302 2 PE4 PE4 . 
E 3 1GP B 1 301 2 1GP 1GP . 
F 4 PE4 B 1 302 1 PE4 PE4 . 
G 5 HOH A 1 401 1 HOH HOH . 
G 5 HOH A 2 402 2 HOH HOH . 
G 5 HOH A 3 403 3 HOH HOH . 
G 5 HOH A 4 404 4 HOH HOH . 
G 5 HOH A 5 405 5 HOH HOH . 
G 5 HOH A 6 406 6 HOH HOH . 
G 5 HOH A 7 407 8 HOH HOH . 
G 5 HOH A 8 408 9 HOH HOH . 
G 5 HOH A 9 409 12 HOH HOH . 
G 5 HOH A 10 410 14 HOH HOH . 
G 5 HOH A 11 411 16 HOH HOH . 
G 5 HOH A 12 412 22 HOH HOH . 
G 5 HOH A 13 413 24 HOH HOH . 
G 5 HOH A 14 414 25 HOH HOH . 
G 5 HOH A 15 415 29 HOH HOH . 
G 5 HOH A 16 416 33 HOH HOH . 
G 5 HOH A 17 417 36 HOH HOH . 
G 5 HOH A 18 418 40 HOH HOH . 
G 5 HOH A 19 419 42 HOH HOH . 
G 5 HOH A 20 420 43 HOH HOH . 
G 5 HOH A 21 421 46 HOH HOH . 
G 5 HOH A 22 422 49 HOH HOH . 
G 5 HOH A 23 423 50 HOH HOH . 
G 5 HOH A 24 424 54 HOH HOH . 
G 5 HOH A 25 425 55 HOH HOH . 
G 5 HOH A 26 426 60 HOH HOH . 
G 5 HOH A 27 427 62 HOH HOH . 
G 5 HOH A 28 428 63 HOH HOH . 
G 5 HOH A 29 429 65 HOH HOH . 
G 5 HOH A 30 430 68 HOH HOH . 
G 5 HOH A 31 431 69 HOH HOH . 
G 5 HOH A 32 432 71 HOH HOH . 
G 5 HOH A 33 433 73 HOH HOH . 
G 5 HOH A 34 434 75 HOH HOH . 
G 5 HOH A 35 435 76 HOH HOH . 
G 5 HOH A 36 436 80 HOH HOH . 
G 5 HOH A 37 437 81 HOH HOH . 
G 5 HOH A 38 438 82 HOH HOH . 
G 5 HOH A 39 439 83 HOH HOH . 
G 5 HOH A 40 440 86 HOH HOH . 
G 5 HOH A 41 441 88 HOH HOH . 
G 5 HOH A 42 442 90 HOH HOH . 
G 5 HOH A 43 443 93 HOH HOH . 
G 5 HOH A 44 444 97 HOH HOH . 
G 5 HOH A 45 445 98 HOH HOH . 
G 5 HOH A 46 446 99 HOH HOH . 
G 5 HOH A 47 447 101 HOH HOH . 
G 5 HOH A 48 448 106 HOH HOH . 
G 5 HOH A 49 449 107 HOH HOH . 
G 5 HOH A 50 450 108 HOH HOH . 
G 5 HOH A 51 451 109 HOH HOH . 
G 5 HOH A 52 452 110 HOH HOH . 
G 5 HOH A 53 453 112 HOH HOH . 
G 5 HOH A 54 454 113 HOH HOH . 
G 5 HOH A 55 455 115 HOH HOH . 
G 5 HOH A 56 456 116 HOH HOH . 
G 5 HOH A 57 457 117 HOH HOH . 
G 5 HOH A 58 458 122 HOH HOH . 
G 5 HOH A 59 459 125 HOH HOH . 
G 5 HOH A 60 460 126 HOH HOH . 
G 5 HOH A 61 461 127 HOH HOH . 
G 5 HOH A 62 462 129 HOH HOH . 
G 5 HOH A 63 463 131 HOH HOH . 
G 5 HOH A 64 464 134 HOH HOH . 
G 5 HOH A 65 465 135 HOH HOH . 
G 5 HOH A 66 466 136 HOH HOH . 
G 5 HOH A 67 467 137 HOH HOH . 
G 5 HOH A 68 468 138 HOH HOH . 
G 5 HOH A 69 469 142 HOH HOH . 
G 5 HOH A 70 470 145 HOH HOH . 
G 5 HOH A 71 471 146 HOH HOH . 
G 5 HOH A 72 472 147 HOH HOH . 
G 5 HOH A 73 473 151 HOH HOH . 
G 5 HOH A 74 474 152 HOH HOH . 
G 5 HOH A 75 475 153 HOH HOH . 
G 5 HOH A 76 476 154 HOH HOH . 
G 5 HOH A 77 477 158 HOH HOH . 
G 5 HOH A 78 478 160 HOH HOH . 
G 5 HOH A 79 479 161 HOH HOH . 
G 5 HOH A 80 480 163 HOH HOH . 
G 5 HOH A 81 481 164 HOH HOH . 
G 5 HOH A 82 482 165 HOH HOH . 
G 5 HOH A 83 483 166 HOH HOH . 
G 5 HOH A 84 484 167 HOH HOH . 
G 5 HOH A 85 485 168 HOH HOH . 
G 5 HOH A 86 486 169 HOH HOH . 
G 5 HOH A 87 487 170 HOH HOH . 
G 5 HOH A 88 488 171 HOH HOH . 
G 5 HOH A 89 489 172 HOH HOH . 
G 5 HOH A 90 490 175 HOH HOH . 
G 5 HOH A 91 491 176 HOH HOH . 
G 5 HOH A 92 492 177 HOH HOH . 
G 5 HOH A 93 493 178 HOH HOH . 
G 5 HOH A 94 494 179 HOH HOH . 
G 5 HOH A 95 495 180 HOH HOH . 
G 5 HOH A 96 496 182 HOH HOH . 
G 5 HOH A 97 497 183 HOH HOH . 
G 5 HOH A 98 498 188 HOH HOH . 
G 5 HOH A 99 499 189 HOH HOH . 
G 5 HOH A 100 500 191 HOH HOH . 
G 5 HOH A 101 501 194 HOH HOH . 
G 5 HOH A 102 502 195 HOH HOH . 
G 5 HOH A 103 503 197 HOH HOH . 
G 5 HOH A 104 504 200 HOH HOH . 
G 5 HOH A 105 505 201 HOH HOH . 
G 5 HOH A 106 506 207 HOH HOH . 
G 5 HOH A 107 507 209 HOH HOH . 
G 5 HOH A 108 508 210 HOH HOH . 
H 5 HOH B 1 401 7 HOH HOH . 
H 5 HOH B 2 402 10 HOH HOH . 
H 5 HOH B 3 403 11 HOH HOH . 
H 5 HOH B 4 404 13 HOH HOH . 
H 5 HOH B 5 405 15 HOH HOH . 
H 5 HOH B 6 406 17 HOH HOH . 
H 5 HOH B 7 407 18 HOH HOH . 
H 5 HOH B 8 408 19 HOH HOH . 
H 5 HOH B 9 409 20 HOH HOH . 
H 5 HOH B 10 410 21 HOH HOH . 
H 5 HOH B 11 411 23 HOH HOH . 
H 5 HOH B 12 412 26 HOH HOH . 
H 5 HOH B 13 413 27 HOH HOH . 
H 5 HOH B 14 414 28 HOH HOH . 
H 5 HOH B 15 415 30 HOH HOH . 
H 5 HOH B 16 416 31 HOH HOH . 
H 5 HOH B 17 417 32 HOH HOH . 
H 5 HOH B 18 418 34 HOH HOH . 
H 5 HOH B 19 419 35 HOH HOH . 
H 5 HOH B 20 420 37 HOH HOH . 
H 5 HOH B 21 421 38 HOH HOH . 
H 5 HOH B 22 422 39 HOH HOH . 
H 5 HOH B 23 423 41 HOH HOH . 
H 5 HOH B 24 424 44 HOH HOH . 
H 5 HOH B 25 425 45 HOH HOH . 
H 5 HOH B 26 426 47 HOH HOH . 
H 5 HOH B 27 427 48 HOH HOH . 
H 5 HOH B 28 428 51 HOH HOH . 
H 5 HOH B 29 429 52 HOH HOH . 
H 5 HOH B 30 430 53 HOH HOH . 
H 5 HOH B 31 431 56 HOH HOH . 
H 5 HOH B 32 432 57 HOH HOH . 
H 5 HOH B 33 433 58 HOH HOH . 
H 5 HOH B 34 434 59 HOH HOH . 
H 5 HOH B 35 435 61 HOH HOH . 
H 5 HOH B 36 436 64 HOH HOH . 
H 5 HOH B 37 437 66 HOH HOH . 
H 5 HOH B 38 438 67 HOH HOH . 
H 5 HOH B 39 439 70 HOH HOH . 
H 5 HOH B 40 440 72 HOH HOH . 
H 5 HOH B 41 441 74 HOH HOH . 
H 5 HOH B 42 442 77 HOH HOH . 
H 5 HOH B 43 443 78 HOH HOH . 
H 5 HOH B 44 444 79 HOH HOH . 
H 5 HOH B 45 445 84 HOH HOH . 
H 5 HOH B 46 446 85 HOH HOH . 
H 5 HOH B 47 447 87 HOH HOH . 
H 5 HOH B 48 448 89 HOH HOH . 
H 5 HOH B 49 449 91 HOH HOH . 
H 5 HOH B 50 450 92 HOH HOH . 
H 5 HOH B 51 451 94 HOH HOH . 
H 5 HOH B 52 452 95 HOH HOH . 
H 5 HOH B 53 453 96 HOH HOH . 
H 5 HOH B 54 454 100 HOH HOH . 
H 5 HOH B 55 455 102 HOH HOH . 
H 5 HOH B 56 456 103 HOH HOH . 
H 5 HOH B 57 457 104 HOH HOH . 
H 5 HOH B 58 458 105 HOH HOH . 
H 5 HOH B 59 459 111 HOH HOH . 
H 5 HOH B 60 460 114 HOH HOH . 
H 5 HOH B 61 461 118 HOH HOH . 
H 5 HOH B 62 462 119 HOH HOH . 
H 5 HOH B 63 463 120 HOH HOH . 
H 5 HOH B 64 464 121 HOH HOH . 
H 5 HOH B 65 465 123 HOH HOH . 
H 5 HOH B 66 466 124 HOH HOH . 
H 5 HOH B 67 467 128 HOH HOH . 
H 5 HOH B 68 468 130 HOH HOH . 
H 5 HOH B 69 469 132 HOH HOH . 
H 5 HOH B 70 470 133 HOH HOH . 
H 5 HOH B 71 471 139 HOH HOH . 
H 5 HOH B 72 472 140 HOH HOH . 
H 5 HOH B 73 473 141 HOH HOH . 
H 5 HOH B 74 474 143 HOH HOH . 
H 5 HOH B 75 475 144 HOH HOH . 
H 5 HOH B 76 476 148 HOH HOH . 
H 5 HOH B 77 477 149 HOH HOH . 
H 5 HOH B 78 478 150 HOH HOH . 
H 5 HOH B 79 479 155 HOH HOH . 
H 5 HOH B 80 480 156 HOH HOH . 
H 5 HOH B 81 481 157 HOH HOH . 
H 5 HOH B 82 482 159 HOH HOH . 
H 5 HOH B 83 483 162 HOH HOH . 
H 5 HOH B 84 484 173 HOH HOH . 
H 5 HOH B 85 485 174 HOH HOH . 
H 5 HOH B 86 486 181 HOH HOH . 
H 5 HOH B 87 487 184 HOH HOH . 
H 5 HOH B 88 488 185 HOH HOH . 
H 5 HOH B 89 489 186 HOH HOH . 
H 5 HOH B 90 490 187 HOH HOH . 
H 5 HOH B 91 491 190 HOH HOH . 
H 5 HOH B 92 492 192 HOH HOH . 
H 5 HOH B 93 493 193 HOH HOH . 
H 5 HOH B 94 494 196 HOH HOH . 
H 5 HOH B 95 495 198 HOH HOH . 
H 5 HOH B 96 496 199 HOH HOH . 
H 5 HOH B 97 497 202 HOH HOH . 
H 5 HOH B 98 498 203 HOH HOH . 
H 5 HOH B 99 499 204 HOH HOH . 
H 5 HOH B 100 500 205 HOH HOH . 
H 5 HOH B 101 501 206 HOH HOH . 
H 5 HOH B 102 502 208 HOH HOH . 
H 5 HOH B 103 503 211 HOH HOH . 
H 5 HOH B 104 504 212 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C3 1GP . . . C 3 19.607 4.253 -12.115 1 27.53 ? C3 1GP 301 A 1 
HETATM 2 O O3 1GP . . . C 3 18.285 3.928 -10.074 1 27.28 ? O3 1GP 301 A 1 
HETATM 3 C C2 1GP . . . C 3 19.203 4.809 -10.737 1 30.31 ? C2 1GP 301 A 1 
HETATM 4 O O2 1GP . . . C 3 20.123 2.915 -12.02 1 28.43 ? O2 1GP 301 A 1 
HETATM 5 C C1 1GP . . . C 3 18.595 6.206 -10.879 1 27.12 ? C1 1GP 301 A 1 
HETATM 6 O O1P 1GP . . . C 3 17.663 6.204 -11.953 1 29.44 ? O1P 1GP 301 A 1 
HETATM 7 O O2P 1GP . . . C 3 17.574 8.646 -11.863 1 27.46 ? O2P 1GP 301 A 1 
HETATM 8 O O3P 1GP . . . C 3 18.414 7.445 -13.942 1 28.66 ? O3P 1GP 301 A 1 
HETATM 9 O O4P 1GP . . . C 3 15.969 7.337 -13.339 1 24.1 ? O4P 1GP 301 A 1 
HETATM 10 P P 1GP . . . C 3 17.386 7.513 -12.84 1 28.66 ? P 1GP 301 A 1 
HETATM 11 H H31 1GP . . . C 3 20.365 4.902 -12.558 1 33.04 ? H31 1GP 301 A 1 
HETATM 12 H H32 1GP . . . C 3 18.737 4.258 -12.775 1 33.04 ? H32 1GP 301 A 1 
HETATM 13 H HO3 1GP . . . C 3 17.469 3.865 -10.591 1 32.74 ? HO3 1GP 301 A 1 
HETATM 14 H H2 1GP . . . C 3 20.114 4.898 -10.129 1 36.37 ? H2 1GP 301 A 1 
HETATM 15 H HO2 1GP . . . C 3 20.365 2.6 -12.901 1 34.12 ? HO2 1GP 301 A 1 
HETATM 16 H H11 1GP . . . C 3 19.384 6.935 -11.075 1 32.54 ? H11 1GP 301 A 1 
HETATM 17 H H12 1GP . . . C 3 18.092 6.488 -9.952 1 32.54 ? H12 1GP 301 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           329 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           17 
#