data_4NAG # _model_server_result.job_id 8eWpeDthcAjfIgXul8hsRA _model_server_result.datetime_utc '2024-11-28 09:53:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4nag # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":101}' # _entry.id 4NAG # _exptl.entry_id 4NAG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description HEXANE-1,6-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.42 _cell.angle_gamma 90 _cell.entry_id 4NAG _cell.length_a 13.804 _cell.length_b 45.096 _cell.length_c 13.89 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4NAG _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 software_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D 1 1 B,E 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A N GLY 1 A GLY 1 1_555 A CD GLU 7 A GLU 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale2 B N GLY 1 B GLY 1 1_555 B CD GLU 7 B GLU 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id HEZ _chem_comp.mon_nstd_flag . _chem_comp.name HEXANE-1,6-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 HEZ sing 56 n n O1 HO1 HEZ sing 57 n n C1 C2 HEZ sing 58 n n C1 H11 HEZ sing 59 n n C1 H12 HEZ sing 60 n n C2 C3 HEZ sing 61 n n C2 H21 HEZ sing 62 n n C2 H22 HEZ sing 63 n n C3 C4 HEZ sing 64 n n C3 H31 HEZ sing 65 n n C3 H32 HEZ sing 66 n n C4 C5 HEZ sing 67 n n C4 H41 HEZ sing 68 n n C4 H42 HEZ sing 69 n n C5 C6 HEZ sing 70 n n C5 H51 HEZ sing 71 n n C5 H52 HEZ sing 72 n n C6 O6 HEZ sing 73 n n C6 H61 HEZ sing 74 n n C6 H62 HEZ sing 75 n n O6 HO6 HEZ sing 76 n n # _atom_sites.entry_id 4NAG _atom_sites.fract_transf_matrix[1][1] 0.072443 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001796 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022175 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.072016 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEZ A 1 101 102 HEZ HDO . D 3 HOH A 1 201 101 HOH HOH . D 3 HOH A 2 202 103 HOH HOH . D 3 HOH A 3 203 103 HOH HOH . D 3 HOH A 4 204 103 HOH HOH . D 3 HOH A 5 205 103 HOH HOH . D 3 HOH A 6 206 103 HOH HOH . D 3 HOH A 7 207 103 HOH HOH . D 3 HOH A 8 208 103 HOH HOH . D 3 HOH A 9 209 103 HOH HOH . D 3 HOH A 10 210 103 HOH HOH . D 3 HOH A 11 211 103 HOH HOH . D 3 HOH A 12 212 103 HOH HOH . D 3 HOH A 13 213 103 HOH HOH . E 3 HOH B 1 101 103 HOH HOH . E 3 HOH B 2 102 103 HOH HOH . E 3 HOH B 3 103 103 HOH HOH . E 3 HOH B 4 104 103 HOH HOH . E 3 HOH B 5 105 103 HOH HOH . E 3 HOH B 6 106 103 HOH HOH . E 3 HOH B 7 107 103 HOH HOH . E 3 HOH B 8 108 103 HOH HOH . E 3 HOH B 9 109 103 HOH HOH . E 3 HOH B 10 110 103 HOH HOH . E 3 HOH B 11 111 103 HOH HOH . E 3 HOH B 12 112 103 HOH HOH . E 3 HOH B 13 113 103 HOH HOH . E 3 HOH B 14 114 103 HOH HOH . E 3 HOH B 15 115 103 HOH HOH . E 3 HOH B 16 116 103 HOH HOH . E 3 HOH B 17 117 103 HOH HOH . E 3 HOH B 18 118 103 HOH HOH . E 3 HOH B 19 119 103 HOH HOH . E 3 HOH B 20 120 103 HOH HOH . E 3 HOH B 21 121 103 HOH HOH . E 3 HOH B 22 122 103 HOH HOH . E 3 HOH B 23 123 103 HOH HOH . E 3 HOH B 24 124 103 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 HEZ . . . C 2 6.174 34.714 13.856 1 5.01 ? O1 HEZ 101 A 1 HETATM 2 C C1 HEZ . . . C 2 5.571 35.656 14.688 1 6.75 ? C1 HEZ 101 A 1 HETATM 3 C C2 HEZ . . . C 2 5.51 37.023 13.929 1 9.11 ? C2 HEZ 101 A 1 HETATM 4 C C3 HEZ . . . C 2 5.074 38.175 14.794 1 10.59 ? C3 HEZ 101 A 1 HETATM 5 C C4 HEZ . . . C 2 5.137 39.488 13.98 1 15.76 ? C4 HEZ 101 A 1 HETATM 6 C C5 HEZ . . . C 2 6.347 40.258 13.376 1 32.93 ? C5 HEZ 101 A 1 HETATM 7 C C6 HEZ . . . C 2 6.27 41.656 12.696 1 35.06 ? C6 HEZ 101 A 1 HETATM 8 O O6 HEZ . . . C 2 6.063 41.275 11.294 1 11.94 ? O6 HEZ 101 A 1 HETATM 9 H HO1 HEZ . . . C 2 5.72 34.628 13.154 1 7.51 ? HO1 HEZ 101 A 1 HETATM 10 H H11 HEZ . . . C 2 6.094 35.756 15.523 1 8.1 ? H11 HEZ 101 A 1 HETATM 11 H H12 HEZ . . . C 2 4.656 35.361 14.927 1 8.1 ? H12 HEZ 101 A 1 HETATM 12 H H21 HEZ . . . C 2 6.406 37.222 13.558 1 10.94 ? H21 HEZ 101 A 1 HETATM 13 H H22 HEZ . . . C 2 4.882 36.938 13.168 1 10.94 ? H22 HEZ 101 A 1 HETATM 14 H H31 HEZ . . . C 2 5.666 38.243 15.585 1 12.7 ? H31 HEZ 101 A 1 HETATM 15 H H32 HEZ . . . C 2 4.149 38.024 15.112 1 12.7 ? H32 HEZ 101 A 1 HETATM 16 H H41 HEZ . . . C 2 4.678 40.155 14.55 1 18.91 ? H41 HEZ 101 A 1 HETATM 17 H H42 HEZ . . . C 2 4.533 39.333 13.211 1 18.91 ? H42 HEZ 101 A 1 HETATM 18 H H51 HEZ . . . C 2 6.752 39.65 12.707 1 39.52 ? H51 HEZ 101 A 1 HETATM 19 H H52 HEZ . . . C 2 7.008 40.346 14.108 1 39.52 ? H52 HEZ 101 A 1 HETATM 20 H H61 HEZ . . . C 2 5.511 42.189 13.043 1 42.07 ? H61 HEZ 101 A 1 HETATM 21 H H62 HEZ . . . C 2 7.11 42.166 12.814 1 42.07 ? H62 HEZ 101 A 1 HETATM 22 H HO6 HEZ . . . C 2 6.028 41.966 10.818 1 17.91 ? HO6 HEZ 101 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 608 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 22 #