data_4NAH
#
_model_server_result.job_id            gMLk2gr4jHM1lHWfKfkXOw 
_model_server_result.datetime_utc      '2025-07-02 00:48:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4nah 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Q","auth_seq_id":202}' 
#
_entry.id    4NAH 
#
_exptl.entry_id    4NAH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              534.458 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '2-[(2-{(1S,2S)-2-[(3,4-dichlorobenzyl)carbamoyl]cyclohexyl}-6-ethylpyrimidin-4-yl)sulfanyl]-1H-imidazole-5-carboxylic acid' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          94.69 
_cell.angle_gamma         90 
_cell.entry_id            4NAH 
_cell.length_a            68.476 
_cell.length_b            105.36 
_cell.length_c            79.98 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4NAH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 H N N 
? 3 I N N 
? 3 K N N 
? 3 N N N 
? 3 Q N N 
? 3 R N N 
#
_chem_comp.formula           'C24 H25 Cl2 N5 O3 S' 
_chem_comp.formula_weight    534.458 
_chem_comp.id                2VJ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '2-[(2-{(1S,2S)-2-[(3,4-dichlorobenzyl)carbamoyl]cyclohexyl}-6-ethylpyrimidin-4-yl)sulfanyl]-1H-imidazole-5-carboxylic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O18 C17 2VJ doub 1 n n 
C14 C13 2VJ sing 2 n n 
C14 C15 2VJ sing 3 n n 
C12 C13 2VJ sing 4 n n 
C12 C11 2VJ sing 5 n n 
C9 C11 2VJ sing 6 n n 
C9 C15 2VJ sing 7 n n 
C9 C7 2VJ sing 8 n n 
C17 C15 2VJ sing 9 n n 
C17 N19 2VJ sing 10 n n 
C22 C23 2VJ doub 11 n y 
C22 C21 2VJ sing 12 n y 
C23 C24 2VJ sing 13 n y 
N8 C7 2VJ doub 14 n y 
N8 C3 2VJ sing 15 n y 
C1 C2 2VJ sing 16 n n 
C2 C3 2VJ sing 17 n n 
C7 N6 2VJ sing 18 n y 
C20 C21 2VJ sing 19 n n 
C20 N19 2VJ sing 20 n n 
C21 C26 2VJ doub 21 n y 
C3 C4 2VJ doub 22 n y 
C24 CL8 2VJ sing 23 n n 
C24 C25 2VJ doub 24 n y 
C26 C25 2VJ sing 25 n y 
C25 CL7 2VJ sing 26 n n 
N6 C5 2VJ doub 27 n y 
C4 C5 2VJ sing 28 n y 
C5 S29 2VJ sing 29 n n 
S29 C30 2VJ sing 30 n n 
N35 C30 2VJ doub 31 n y 
N35 C34 2VJ sing 32 n y 
C30 N31 2VJ sing 33 n y 
C34 C33 2VJ doub 34 n y 
N31 C33 2VJ sing 35 n y 
C33 C36 2VJ sing 36 n n 
C36 O37 2VJ doub 37 n n 
C36 O38 2VJ sing 38 n n 
C1 H1 2VJ sing 39 n n 
C1 H2 2VJ sing 40 n n 
C1 H3 2VJ sing 41 n n 
C2 H4 2VJ sing 42 n n 
C2 H5 2VJ sing 43 n n 
C9 H6 2VJ sing 44 n n 
C11 H7 2VJ sing 45 n n 
C11 H8 2VJ sing 46 n n 
C12 H9 2VJ sing 47 n n 
C12 H10 2VJ sing 48 n n 
C13 H11 2VJ sing 49 n n 
C13 H12 2VJ sing 50 n n 
C14 H13 2VJ sing 51 n n 
C14 H14 2VJ sing 52 n n 
C15 H15 2VJ sing 53 n n 
C20 H16 2VJ sing 54 n n 
C20 H17 2VJ sing 55 n n 
C22 H18 2VJ sing 56 n n 
C34 H19 2VJ sing 57 n n 
C4 H20 2VJ sing 58 n n 
N19 H21 2VJ sing 59 n n 
C23 H22 2VJ sing 60 n n 
C26 H23 2VJ sing 61 n n 
N31 H24 2VJ sing 62 n n 
O38 H26 2VJ sing 63 n n 
#
_atom_sites.entry_id                     4NAH 
_atom_sites.fract_transf_matrix[1][1]    0.014604 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001198 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009491 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012545 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 AGS A 1 201 1 AGS AGS . 
H 3 2VJ A 1 202 1 2VJ INH . 
I 3 2VJ A 1 203 1 2VJ INH . 
J 2 AGS B 1 201 1 AGS AGS . 
K 3 2VJ B 1 202 1 2VJ INH . 
L 2 AGS C 1 201 1 AGS AGS . 
M 2 AGS D 1 201 1 AGS AGS . 
N 3 2VJ D 1 202 1 2VJ INH . 
O 2 AGS E 1 201 1 AGS AGS . 
P 2 AGS F 1 201 1 AGS AGS . 
Q 3 2VJ F 1 202 1 2VJ INH . 
R 3 2VJ F 1 203 1 2VJ INH . 
S 4 HOH A 1 301 2 HOH HOH . 
S 4 HOH A 2 302 11 HOH HOH . 
S 4 HOH A 3 303 14 HOH HOH . 
S 4 HOH A 4 304 17 HOH HOH . 
S 4 HOH A 5 305 20 HOH HOH . 
S 4 HOH A 6 306 22 HOH HOH . 
S 4 HOH A 7 307 26 HOH HOH . 
S 4 HOH A 8 308 27 HOH HOH . 
S 4 HOH A 9 309 37 HOH HOH . 
S 4 HOH A 10 310 40 HOH HOH . 
S 4 HOH A 11 311 41 HOH HOH . 
S 4 HOH A 12 312 48 HOH HOH . 
S 4 HOH A 13 313 51 HOH HOH . 
S 4 HOH A 14 314 57 HOH HOH . 
S 4 HOH A 15 315 61 HOH HOH . 
S 4 HOH A 16 316 71 HOH HOH . 
S 4 HOH A 17 317 75 HOH HOH . 
T 4 HOH B 1 301 4 HOH HOH . 
T 4 HOH B 2 302 5 HOH HOH . 
T 4 HOH B 3 303 10 HOH HOH . 
T 4 HOH B 4 304 12 HOH HOH . 
T 4 HOH B 5 305 16 HOH HOH . 
T 4 HOH B 6 306 24 HOH HOH . 
T 4 HOH B 7 307 36 HOH HOH . 
T 4 HOH B 8 308 39 HOH HOH . 
T 4 HOH B 9 309 44 HOH HOH . 
T 4 HOH B 10 310 45 HOH HOH . 
T 4 HOH B 11 311 46 HOH HOH . 
T 4 HOH B 12 312 50 HOH HOH . 
T 4 HOH B 13 313 55 HOH HOH . 
T 4 HOH B 14 314 56 HOH HOH . 
T 4 HOH B 15 315 58 HOH HOH . 
T 4 HOH B 16 316 62 HOH HOH . 
T 4 HOH B 17 317 65 HOH HOH . 
T 4 HOH B 18 318 67 HOH HOH . 
T 4 HOH B 19 319 68 HOH HOH . 
T 4 HOH B 20 320 69 HOH HOH . 
T 4 HOH B 21 321 74 HOH HOH . 
T 4 HOH B 22 322 76 HOH HOH . 
U 4 HOH C 1 301 1 HOH HOH . 
U 4 HOH C 2 302 3 HOH HOH . 
U 4 HOH C 3 303 13 HOH HOH . 
U 4 HOH C 4 304 19 HOH HOH . 
U 4 HOH C 5 305 25 HOH HOH . 
U 4 HOH C 6 306 34 HOH HOH . 
U 4 HOH C 7 307 38 HOH HOH . 
U 4 HOH C 8 308 49 HOH HOH . 
U 4 HOH C 9 309 53 HOH HOH . 
U 4 HOH C 10 310 54 HOH HOH . 
U 4 HOH C 11 311 63 HOH HOH . 
U 4 HOH C 12 312 64 HOH HOH . 
U 4 HOH C 13 313 70 HOH HOH . 
V 4 HOH D 1 301 6 HOH HOH . 
V 4 HOH D 2 302 9 HOH HOH . 
V 4 HOH D 3 303 21 HOH HOH . 
V 4 HOH D 4 304 29 HOH HOH . 
V 4 HOH D 5 305 30 HOH HOH . 
V 4 HOH D 6 306 31 HOH HOH . 
V 4 HOH D 7 307 32 HOH HOH . 
V 4 HOH D 8 308 60 HOH HOH . 
V 4 HOH D 9 309 72 HOH HOH . 
V 4 HOH D 10 310 78 HOH HOH . 
W 4 HOH E 1 301 33 HOH HOH . 
W 4 HOH E 2 302 43 HOH HOH . 
W 4 HOH E 3 303 77 HOH HOH . 
X 4 HOH F 1 301 7 HOH HOH . 
X 4 HOH F 2 302 8 HOH HOH . 
X 4 HOH F 3 303 15 HOH HOH . 
X 4 HOH F 4 304 18 HOH HOH . 
X 4 HOH F 5 305 23 HOH HOH . 
X 4 HOH F 6 306 28 HOH HOH . 
X 4 HOH F 7 307 35 HOH HOH . 
X 4 HOH F 8 308 42 HOH HOH . 
X 4 HOH F 9 309 47 HOH HOH . 
X 4 HOH F 10 310 52 HOH HOH . 
X 4 HOH F 11 311 59 HOH HOH . 
X 4 HOH F 12 312 66 HOH HOH . 
X 4 HOH F 13 313 73 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 2VJ . . . Q 3 -21.798 -36.599 -31.568 1 48.64 ? C1 2VJ 202 F 1 
HETATM 2 C C2 2VJ . . . Q 3 -22.833 -36.744 -32.683 1 40.35 ? C2 2VJ 202 F 1 
HETATM 3 C C3 2VJ . . . Q 3 -24.215 -36.804 -32.104 1 37.63 ? C3 2VJ 202 F 1 
HETATM 4 N N6 2VJ . . . Q 3 -26.728 -36.852 -31.092 1 35.2 ? N6 2VJ 202 F 1 
HETATM 5 C C7 2VJ . . . Q 3 -25.93 -37.862 -30.976 1 37.3 ? C7 2VJ 202 F 1 
HETATM 6 C C9 2VJ . . . Q 3 -26.464 -39.016 -30.205 1 39.56 ? C9 2VJ 202 F 1 
HETATM 7 C C11 2VJ . . . Q 3 -26.348 -38.612 -28.727 1 40.38 ? C11 2VJ 202 F 1 
HETATM 8 C C12 2VJ . . . Q 3 -26.794 -39.761 -27.821 1 40.44 ? C12 2VJ 202 F 1 
HETATM 9 C C13 2VJ . . . Q 3 -28.207 -40.218 -28.197 1 44.24 ? C13 2VJ 202 F 1 
HETATM 10 C C14 2VJ . . . Q 3 -28.391 -40.447 -29.697 1 42.59 ? C14 2VJ 202 F 1 
HETATM 11 C C15 2VJ . . . Q 3 -27.929 -39.246 -30.526 1 41.25 ? C15 2VJ 202 F 1 
HETATM 12 C C20 2VJ . . . Q 3 -29.627 -39.371 -33.918 1 39.95 ? C20 2VJ 202 F 1 
HETATM 13 C C21 2VJ . . . Q 3 -28.931 -38.559 -34.949 1 44.9 ? C21 2VJ 202 F 1 
HETATM 14 C C22 2VJ . . . Q 3 -29.016 -38.981 -36.265 1 46.79 ? C22 2VJ 202 F 1 
HETATM 15 C C24 2VJ . . . Q 3 -27.713 -37.136 -36.951 1 50 ? C24 2VJ 202 F 1 
HETATM 16 C C30 2VJ . . . Q 3 -28.357 -34.446 -30.501 1 50 ? C30 2VJ 202 F 1 
HETATM 17 C C33 2VJ . . . Q 3 -30.21 -34.599 -29.305 1 50 ? C33 2VJ 202 F 1 
HETATM 18 C C34 2VJ . . . Q 3 -29.159 -34.245 -28.458 1 50 ? C34 2VJ 202 F 1 
HETATM 19 C C4 2VJ . . . Q 3 -25.025 -35.721 -32.281 1 36.3 ? C4 2VJ 202 F 1 
HETATM 20 C C5 2VJ . . . Q 3 -26.275 -35.8 -31.728 1 37.68 ? C5 2VJ 202 F 1 
HETATM 21 N N8 2VJ . . . Q 3 -24.685 -37.862 -31.453 1 36.73 ? N8 2VJ 202 F 1 
HETATM 22 C C17 2VJ . . . Q 3 -28.162 -39.623 -31.965 1 42.64 ? C17 2VJ 202 F 1 
HETATM 23 O O18 2VJ . . . Q 3 -27.429 -40.422 -32.537 1 41.68 ? O18 2VJ 202 F 1 
HETATM 24 N N19 2VJ . . . Q 3 -29.233 -39.054 -32.558 1 39.43 ? N19 2VJ 202 F 1 
HETATM 25 C C23 2VJ . . . Q 3 -28.41 -38.277 -37.289 1 47.72 ? C23 2VJ 202 F 1 
HETATM 26 C C25 2VJ . . . Q 3 -27.618 -36.707 -35.613 1 50 ? C25 2VJ 202 F 1 
HETATM 27 C C26 2VJ . . . Q 3 -28.239 -37.416 -34.604 1 46.79 ? C26 2VJ 202 F 1 
HETATM 28 CL CL7 2VJ . . . Q 3 -26.725 -35.275 -35.13 1 50 ? CL7 2VJ 202 F 1 
HETATM 29 CL CL8 2VJ . . . Q 3 -26.953 -36.295 -38.27 1 50 ? CL8 2VJ 202 F 1 
HETATM 30 S S29 2VJ . . . Q 3 -27.302 -34.437 -31.917 1 50 ? S29 2VJ 202 F 1 
HETATM 31 N N31 2VJ . . . Q 3 -29.673 -34.718 -30.59 1 50 ? N31 2VJ 202 F 1 
HETATM 32 N N35 2VJ . . . Q 3 -28.059 -34.157 -29.231 1 50 ? N35 2VJ 202 F 1 
HETATM 33 C C36 2VJ . . . Q 3 -31.594 -34.826 -29.013 1 50 ? C36 2VJ 202 F 1 
HETATM 34 O O37 2VJ . . . Q 3 -32.046 -34.713 -27.874 1 50 ? O37 2VJ 202 F 1 
HETATM 35 O O38 2VJ . . . Q 3 -32.431 -35.182 -30.047 1 50 ? O38 2VJ 202 F 1 
#
_model_server_stats.io_time_ms              53 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           364 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           35 
#