data_4NAJ
#
_model_server_result.job_id            Y9XhDgMDHhj0W-S7ZxIAUA 
_model_server_result.datetime_utc      '2025-03-05 19:44:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4naj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":412}' 
#
_entry.id    4NAJ 
#
_exptl.entry_id    4NAJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              42.02 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'AZIDE ION' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4NAJ 
_cell.length_a            177.02 
_cell.length_b            177.02 
_cell.length_c            177.02 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4NAJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        212 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 3 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 
3 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 M N N 
? 3 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A ND1 HIS 231 A HIS 231 1_555 B CU CU . A CU 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.966 ? 
metalc ? metalc2 A NE2 HIS 234 A HIS 234 1_555 E CU CU . A CU 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.845 ? 
metalc ? metalc3 A NE2 HIS 236 A HIS 236 1_555 D CU CU . A CU 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? 
metalc ? metalc4 A NE2 HIS 287 A HIS 287 1_555 D CU CU . A CU 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? 
metalc ? metalc5 A SG CYS 288 A CYS 288 1_555 B CU CU . A CU 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? 
metalc ? metalc6 A NE2 HIS 289 A HIS 289 1_555 C CU CU . A CU 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
metalc ? metalc7 A ND1 HIS 293 A HIS 293 1_555 B CU CU . A CU 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.913 ? 
metalc ? metalc8 C CU CU . A CU 402 1_555 R O HOH . A HOH 544 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.631 ? 
metalc ? metalc9 D CU CU . A CU 403 1_555 R O HOH . A HOH 544 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? 
#
_chem_comp.formula           'N3 -1' 
_chem_comp.formula_weight    42.02 
_chem_comp.id                AZI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'AZIDE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 N2 AZI doub 157 n n 
N2 N3 AZI doub 158 n n 
#
_atom_sites.entry_id                     4NAJ 
_atom_sites.fract_transf_matrix[1][1]    0.005649 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005649 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005649 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CU A 1 401 401 CU CU . 
C 2 CU A 1 402 402 CU CU . 
D 2 CU A 1 403 403 CU CU . 
E 2 CU A 1 404 404 CU CU . 
F 3 AZI A 1 405 406 AZI AZI . 
G 4 PGE A 1 406 409 PGE PGE . 
H 5 GOL A 1 407 2 GOL GOL . 
I 5 GOL A 1 408 3 GOL GOL . 
J 5 GOL A 1 409 4 GOL GOL . 
K 5 GOL A 1 410 5 GOL GOL . 
L 6 P6G A 1 411 1 P6G P6G . 
M 3 AZI A 1 412 1 AZI AZI . 
N 3 AZI A 1 413 2 AZI AZI . 
O 7 PE5 A 1 414 1 PE5 PE5 . 
P 8 7PE A 1 415 1 7PE 7PE . 
Q 9 1PE A 1 416 1 1PE 1PE . 
R 10 HOH A 1 501 501 HOH HOH . 
R 10 HOH A 2 502 502 HOH HOH . 
R 10 HOH A 3 503 503 HOH HOH . 
R 10 HOH A 4 504 504 HOH HOH . 
R 10 HOH A 5 505 505 HOH HOH . 
R 10 HOH A 6 506 506 HOH HOH . 
R 10 HOH A 7 507 507 HOH HOH . 
R 10 HOH A 8 508 508 HOH HOH . 
R 10 HOH A 9 509 509 HOH HOH . 
R 10 HOH A 10 510 510 HOH HOH . 
R 10 HOH A 11 511 511 HOH HOH . 
R 10 HOH A 12 512 512 HOH HOH . 
R 10 HOH A 13 513 513 HOH HOH . 
R 10 HOH A 14 514 514 HOH HOH . 
R 10 HOH A 15 515 515 HOH HOH . 
R 10 HOH A 16 516 516 HOH HOH . 
R 10 HOH A 17 517 517 HOH HOH . 
R 10 HOH A 18 518 518 HOH HOH . 
R 10 HOH A 19 519 519 HOH HOH . 
R 10 HOH A 20 520 520 HOH HOH . 
R 10 HOH A 21 521 521 HOH HOH . 
R 10 HOH A 22 522 522 HOH HOH . 
R 10 HOH A 23 523 523 HOH HOH . 
R 10 HOH A 24 524 524 HOH HOH . 
R 10 HOH A 25 525 525 HOH HOH . 
R 10 HOH A 26 526 526 HOH HOH . 
R 10 HOH A 27 527 527 HOH HOH . 
R 10 HOH A 28 528 528 HOH HOH . 
R 10 HOH A 29 529 529 HOH HOH . 
R 10 HOH A 30 530 530 HOH HOH . 
R 10 HOH A 31 531 531 HOH HOH . 
R 10 HOH A 32 532 532 HOH HOH . 
R 10 HOH A 33 533 533 HOH HOH . 
R 10 HOH A 34 534 534 HOH HOH . 
R 10 HOH A 35 535 535 HOH HOH . 
R 10 HOH A 36 536 536 HOH HOH . 
R 10 HOH A 37 537 537 HOH HOH . 
R 10 HOH A 38 538 538 HOH HOH . 
R 10 HOH A 39 539 539 HOH HOH . 
R 10 HOH A 40 540 540 HOH HOH . 
R 10 HOH A 41 541 541 HOH HOH . 
R 10 HOH A 42 542 542 HOH HOH . 
R 10 HOH A 43 543 543 HOH HOH . 
R 10 HOH A 44 544 544 HOH HOH . 
R 10 HOH A 45 545 545 HOH HOH . 
R 10 HOH A 46 546 546 HOH HOH . 
R 10 HOH A 47 547 547 HOH HOH . 
R 10 HOH A 48 548 548 HOH HOH . 
R 10 HOH A 49 549 549 HOH HOH . 
R 10 HOH A 50 550 550 HOH HOH . 
R 10 HOH A 51 551 551 HOH HOH . 
R 10 HOH A 52 552 552 HOH HOH . 
R 10 HOH A 53 553 553 HOH HOH . 
R 10 HOH A 54 554 554 HOH HOH . 
R 10 HOH A 55 555 555 HOH HOH . 
R 10 HOH A 56 556 556 HOH HOH . 
R 10 HOH A 57 557 557 HOH HOH . 
R 10 HOH A 58 558 558 HOH HOH . 
R 10 HOH A 59 559 559 HOH HOH . 
R 10 HOH A 60 560 560 HOH HOH . 
R 10 HOH A 61 561 561 HOH HOH . 
R 10 HOH A 62 562 563 HOH HOH . 
R 10 HOH A 63 563 564 HOH HOH . 
R 10 HOH A 64 564 565 HOH HOH . 
R 10 HOH A 65 565 566 HOH HOH . 
R 10 HOH A 66 566 567 HOH HOH . 
R 10 HOH A 67 567 568 HOH HOH . 
R 10 HOH A 68 568 569 HOH HOH . 
R 10 HOH A 69 569 570 HOH HOH . 
R 10 HOH A 70 570 571 HOH HOH . 
R 10 HOH A 71 571 572 HOH HOH . 
R 10 HOH A 72 572 573 HOH HOH . 
R 10 HOH A 73 573 574 HOH HOH . 
R 10 HOH A 74 574 575 HOH HOH . 
R 10 HOH A 75 575 576 HOH HOH . 
R 10 HOH A 76 576 577 HOH HOH . 
R 10 HOH A 77 577 578 HOH HOH . 
R 10 HOH A 78 578 579 HOH HOH . 
R 10 HOH A 79 579 580 HOH HOH . 
R 10 HOH A 80 580 581 HOH HOH . 
R 10 HOH A 81 581 582 HOH HOH . 
R 10 HOH A 82 582 583 HOH HOH . 
R 10 HOH A 83 583 584 HOH HOH . 
R 10 HOH A 84 584 585 HOH HOH . 
R 10 HOH A 85 585 586 HOH HOH . 
R 10 HOH A 86 586 587 HOH HOH . 
R 10 HOH A 87 587 588 HOH HOH . 
R 10 HOH A 88 588 589 HOH HOH . 
R 10 HOH A 89 589 590 HOH HOH . 
R 10 HOH A 90 590 591 HOH HOH . 
R 10 HOH A 91 591 592 HOH HOH . 
R 10 HOH A 92 592 593 HOH HOH . 
R 10 HOH A 93 593 594 HOH HOH . 
R 10 HOH A 94 594 1 HOH HOH . 
R 10 HOH A 95 595 2 HOH HOH . 
R 10 HOH A 96 596 3 HOH HOH . 
R 10 HOH A 97 597 5 HOH HOH . 
R 10 HOH A 98 598 6 HOH HOH . 
R 10 HOH A 99 599 7 HOH HOH . 
R 10 HOH A 100 600 8 HOH HOH . 
R 10 HOH A 101 601 9 HOH HOH . 
R 10 HOH A 102 602 11 HOH HOH . 
R 10 HOH A 103 603 12 HOH HOH . 
R 10 HOH A 104 604 13 HOH HOH . 
R 10 HOH A 105 605 14 HOH HOH . 
R 10 HOH A 106 606 15 HOH HOH . 
R 10 HOH A 107 607 16 HOH HOH . 
R 10 HOH A 108 608 17 HOH HOH . 
R 10 HOH A 109 609 18 HOH HOH . 
R 10 HOH A 110 610 19 HOH HOH . 
R 10 HOH A 111 611 20 HOH HOH . 
R 10 HOH A 112 612 21 HOH HOH . 
R 10 HOH A 113 613 22 HOH HOH . 
R 10 HOH A 114 614 23 HOH HOH . 
R 10 HOH A 115 615 24 HOH HOH . 
R 10 HOH A 116 616 25 HOH HOH . 
R 10 HOH A 117 617 26 HOH HOH . 
R 10 HOH A 118 618 27 HOH HOH . 
R 10 HOH A 119 619 28 HOH HOH . 
R 10 HOH A 120 620 29 HOH HOH . 
R 10 HOH A 121 621 30 HOH HOH . 
R 10 HOH A 122 622 31 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 AZI . . . M 3 -56.583 -8.045 -6.241 0.57 28.48 ? N1 AZI 412 A 1 
HETATM 2 N N2 AZI . . . M 3 -56.253 -8.794 -5.395 0.57 31.24 ? N2 AZI 412 A 1 
HETATM 3 N N3 AZI . . . M 3 -55.927 -9.544 -4.552 0.57 26.59 ? N3 AZI 412 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           286 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           3 
#