data_4NAJ # _model_server_result.job_id dmeFYp7ptsOsv7IXMMkvIw _model_server_result.datetime_utc '2025-03-05 19:20:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4naj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":414}' # _entry.id 4NAJ # _exptl.entry_id 4NAJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 398.489 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4NAJ _cell.length_a 177.02 _cell.length_b 177.02 _cell.length_c 177.02 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4NAJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 212 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 3 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id O _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 231 A HIS 231 1_555 B CU CU . A CU 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.966 ? metalc ? metalc2 A NE2 HIS 234 A HIS 234 1_555 E CU CU . A CU 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.845 ? metalc ? metalc3 A NE2 HIS 236 A HIS 236 1_555 D CU CU . A CU 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? metalc ? metalc4 A NE2 HIS 287 A HIS 287 1_555 D CU CU . A CU 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc5 A SG CYS 288 A CYS 288 1_555 B CU CU . A CU 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc6 A NE2 HIS 289 A HIS 289 1_555 C CU CU . A CU 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? metalc ? metalc7 A ND1 HIS 293 A HIS 293 1_555 B CU CU . A CU 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.913 ? metalc ? metalc8 C CU CU . A CU 402 1_555 R O HOH . A HOH 544 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.631 ? metalc ? metalc9 D CU CU . A CU 403 1_555 R O HOH . A HOH 544 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? # _chem_comp.formula 'C18 H38 O9' _chem_comp.formula_weight 398.489 _chem_comp.id PE5 _chem_comp.mon_nstd_flag . _chem_comp.name 3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '2-(2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL;POLYETHYLENE GLYCOL PEG400' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C48 C50 PE5 sing 383 n n C48 H481 PE5 sing 384 n n C48 H482 PE5 sing 385 n n C48 H483 PE5 sing 386 n n C50 O1 PE5 sing 387 n n C50 H501 PE5 sing 388 n n C50 H502 PE5 sing 389 n n O1 C1 PE5 sing 390 n n C1 C2 PE5 sing 391 n n C1 H11 PE5 sing 392 n n C1 H12 PE5 sing 393 n n C2 O2 PE5 sing 394 n n C2 H21 PE5 sing 395 n n C2 H22 PE5 sing 396 n n O2 C3 PE5 sing 397 n n C3 C4 PE5 sing 398 n n C3 H31 PE5 sing 399 n n C3 H32 PE5 sing 400 n n C4 O3 PE5 sing 401 n n C4 H41 PE5 sing 402 n n C4 H42 PE5 sing 403 n n O3 C5 PE5 sing 404 n n C5 C6 PE5 sing 405 n n C5 H51 PE5 sing 406 n n C5 H52A PE5 sing 407 n n C6 O4 PE5 sing 408 n n C6 H61 PE5 sing 409 n n C6 H62 PE5 sing 410 n n O4 C7 PE5 sing 411 n n C7 C8 PE5 sing 412 n n C7 H71 PE5 sing 413 n n C7 H72 PE5 sing 414 n n C8 O5 PE5 sing 415 n n C8 H81 PE5 sing 416 n n C8 H82 PE5 sing 417 n n O5 C9 PE5 sing 418 n n C9 C10 PE5 sing 419 n n C9 H91 PE5 sing 420 n n C9 H92 PE5 sing 421 n n C10 O6 PE5 sing 422 n n C10 H101 PE5 sing 423 n n C10 H102 PE5 sing 424 n n O6 C11 PE5 sing 425 n n C11 C12 PE5 sing 426 n n C11 H111 PE5 sing 427 n n C11 H112 PE5 sing 428 n n C12 O7 PE5 sing 429 n n C12 H121 PE5 sing 430 n n C12 H122 PE5 sing 431 n n O7 C13 PE5 sing 432 n n C13 C14 PE5 sing 433 n n C13 H131 PE5 sing 434 n n C13 H132 PE5 sing 435 n n C14 O8 PE5 sing 436 n n C14 H141 PE5 sing 437 n n C14 H142 PE5 sing 438 n n O8 C15 PE5 sing 439 n n C15 C16 PE5 sing 440 n n C15 H151 PE5 sing 441 n n C15 H152 PE5 sing 442 n n C16 O52 PE5 sing 443 n n C16 H161 PE5 sing 444 n n C16 H162 PE5 sing 445 n n O52 H52 PE5 sing 446 n n # _atom_sites.entry_id 4NAJ _atom_sites.fract_transf_matrix[1][1] 0.005649 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005649 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005649 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CU A 1 401 401 CU CU . C 2 CU A 1 402 402 CU CU . D 2 CU A 1 403 403 CU CU . E 2 CU A 1 404 404 CU CU . F 3 AZI A 1 405 406 AZI AZI . G 4 PGE A 1 406 409 PGE PGE . H 5 GOL A 1 407 2 GOL GOL . I 5 GOL A 1 408 3 GOL GOL . J 5 GOL A 1 409 4 GOL GOL . K 5 GOL A 1 410 5 GOL GOL . L 6 P6G A 1 411 1 P6G P6G . M 3 AZI A 1 412 1 AZI AZI . N 3 AZI A 1 413 2 AZI AZI . O 7 PE5 A 1 414 1 PE5 PE5 . P 8 7PE A 1 415 1 7PE 7PE . Q 9 1PE A 1 416 1 1PE 1PE . R 10 HOH A 1 501 501 HOH HOH . R 10 HOH A 2 502 502 HOH HOH . R 10 HOH A 3 503 503 HOH HOH . R 10 HOH A 4 504 504 HOH HOH . R 10 HOH A 5 505 505 HOH HOH . R 10 HOH A 6 506 506 HOH HOH . R 10 HOH A 7 507 507 HOH HOH . R 10 HOH A 8 508 508 HOH HOH . R 10 HOH A 9 509 509 HOH HOH . R 10 HOH A 10 510 510 HOH HOH . R 10 HOH A 11 511 511 HOH HOH . R 10 HOH A 12 512 512 HOH HOH . R 10 HOH A 13 513 513 HOH HOH . R 10 HOH A 14 514 514 HOH HOH . R 10 HOH A 15 515 515 HOH HOH . R 10 HOH A 16 516 516 HOH HOH . R 10 HOH A 17 517 517 HOH HOH . R 10 HOH A 18 518 518 HOH HOH . R 10 HOH A 19 519 519 HOH HOH . R 10 HOH A 20 520 520 HOH HOH . R 10 HOH A 21 521 521 HOH HOH . R 10 HOH A 22 522 522 HOH HOH . R 10 HOH A 23 523 523 HOH HOH . R 10 HOH A 24 524 524 HOH HOH . R 10 HOH A 25 525 525 HOH HOH . R 10 HOH A 26 526 526 HOH HOH . R 10 HOH A 27 527 527 HOH HOH . R 10 HOH A 28 528 528 HOH HOH . R 10 HOH A 29 529 529 HOH HOH . R 10 HOH A 30 530 530 HOH HOH . R 10 HOH A 31 531 531 HOH HOH . R 10 HOH A 32 532 532 HOH HOH . R 10 HOH A 33 533 533 HOH HOH . R 10 HOH A 34 534 534 HOH HOH . R 10 HOH A 35 535 535 HOH HOH . R 10 HOH A 36 536 536 HOH HOH . R 10 HOH A 37 537 537 HOH HOH . R 10 HOH A 38 538 538 HOH HOH . R 10 HOH A 39 539 539 HOH HOH . R 10 HOH A 40 540 540 HOH HOH . R 10 HOH A 41 541 541 HOH HOH . R 10 HOH A 42 542 542 HOH HOH . R 10 HOH A 43 543 543 HOH HOH . R 10 HOH A 44 544 544 HOH HOH . R 10 HOH A 45 545 545 HOH HOH . R 10 HOH A 46 546 546 HOH HOH . R 10 HOH A 47 547 547 HOH HOH . R 10 HOH A 48 548 548 HOH HOH . R 10 HOH A 49 549 549 HOH HOH . R 10 HOH A 50 550 550 HOH HOH . R 10 HOH A 51 551 551 HOH HOH . R 10 HOH A 52 552 552 HOH HOH . R 10 HOH A 53 553 553 HOH HOH . R 10 HOH A 54 554 554 HOH HOH . R 10 HOH A 55 555 555 HOH HOH . R 10 HOH A 56 556 556 HOH HOH . R 10 HOH A 57 557 557 HOH HOH . R 10 HOH A 58 558 558 HOH HOH . R 10 HOH A 59 559 559 HOH HOH . R 10 HOH A 60 560 560 HOH HOH . R 10 HOH A 61 561 561 HOH HOH . R 10 HOH A 62 562 563 HOH HOH . R 10 HOH A 63 563 564 HOH HOH . R 10 HOH A 64 564 565 HOH HOH . R 10 HOH A 65 565 566 HOH HOH . R 10 HOH A 66 566 567 HOH HOH . R 10 HOH A 67 567 568 HOH HOH . R 10 HOH A 68 568 569 HOH HOH . R 10 HOH A 69 569 570 HOH HOH . R 10 HOH A 70 570 571 HOH HOH . R 10 HOH A 71 571 572 HOH HOH . R 10 HOH A 72 572 573 HOH HOH . R 10 HOH A 73 573 574 HOH HOH . R 10 HOH A 74 574 575 HOH HOH . R 10 HOH A 75 575 576 HOH HOH . R 10 HOH A 76 576 577 HOH HOH . R 10 HOH A 77 577 578 HOH HOH . R 10 HOH A 78 578 579 HOH HOH . R 10 HOH A 79 579 580 HOH HOH . R 10 HOH A 80 580 581 HOH HOH . R 10 HOH A 81 581 582 HOH HOH . R 10 HOH A 82 582 583 HOH HOH . R 10 HOH A 83 583 584 HOH HOH . R 10 HOH A 84 584 585 HOH HOH . R 10 HOH A 85 585 586 HOH HOH . R 10 HOH A 86 586 587 HOH HOH . R 10 HOH A 87 587 588 HOH HOH . R 10 HOH A 88 588 589 HOH HOH . R 10 HOH A 89 589 590 HOH HOH . R 10 HOH A 90 590 591 HOH HOH . R 10 HOH A 91 591 592 HOH HOH . R 10 HOH A 92 592 593 HOH HOH . R 10 HOH A 93 593 594 HOH HOH . R 10 HOH A 94 594 1 HOH HOH . R 10 HOH A 95 595 2 HOH HOH . R 10 HOH A 96 596 3 HOH HOH . R 10 HOH A 97 597 5 HOH HOH . R 10 HOH A 98 598 6 HOH HOH . R 10 HOH A 99 599 7 HOH HOH . R 10 HOH A 100 600 8 HOH HOH . R 10 HOH A 101 601 9 HOH HOH . R 10 HOH A 102 602 11 HOH HOH . R 10 HOH A 103 603 12 HOH HOH . R 10 HOH A 104 604 13 HOH HOH . R 10 HOH A 105 605 14 HOH HOH . R 10 HOH A 106 606 15 HOH HOH . R 10 HOH A 107 607 16 HOH HOH . R 10 HOH A 108 608 17 HOH HOH . R 10 HOH A 109 609 18 HOH HOH . R 10 HOH A 110 610 19 HOH HOH . R 10 HOH A 111 611 20 HOH HOH . R 10 HOH A 112 612 21 HOH HOH . R 10 HOH A 113 613 22 HOH HOH . R 10 HOH A 114 614 23 HOH HOH . R 10 HOH A 115 615 24 HOH HOH . R 10 HOH A 116 616 25 HOH HOH . R 10 HOH A 117 617 26 HOH HOH . R 10 HOH A 118 618 27 HOH HOH . R 10 HOH A 119 619 28 HOH HOH . R 10 HOH A 120 620 29 HOH HOH . R 10 HOH A 121 621 30 HOH HOH . R 10 HOH A 122 622 31 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C48 PE5 . . . O 7 -62.843 -15.959 -13.078 1 86.39 ? C48 PE5 414 A 1 HETATM 2 C C50 PE5 . . . O 7 -61.875 -17.124 -13.11 1 96.21 ? C50 PE5 414 A 1 HETATM 3 O O1 PE5 . . . O 7 -60.617 -16.632 -13.577 1 105.62 ? O1 PE5 414 A 1 HETATM 4 C C1 PE5 . . . O 7 -59.867 -17.601 -14.307 1 98.7 ? C1 PE5 414 A 1 HETATM 5 C C2 PE5 . . . O 7 -59.541 -17.009 -15.677 1 95.17 ? C2 PE5 414 A 1 HETATM 6 O O2 PE5 . . . O 7 -59.358 -18.064 -16.624 1 98.84 ? O2 PE5 414 A 1 HETATM 7 C C3 PE5 . . . O 7 -59.571 -17.649 -17.975 1 92.33 ? C3 PE5 414 A 1 HETATM 8 C C4 PE5 . . . O 7 -59.138 -18.772 -18.917 1 98.19 ? C4 PE5 414 A 1 HETATM 9 O O3 PE5 . . . O 7 -60.098 -19.834 -18.966 1 110.4 ? O3 PE5 414 A 1 HETATM 10 C C5 PE5 . . . O 7 -59.487 -21.088 -19.292 1 102.46 ? C5 PE5 414 A 1 HETATM 11 C C6 PE5 . . . O 7 -60.376 -21.932 -20.211 1 103.37 ? C6 PE5 414 A 1 HETATM 12 O O4 PE5 . . . O 7 -59.563 -22.866 -20.941 1 100.98 ? O4 PE5 414 A 1 HETATM 13 C C7 PE5 . . . O 7 -59.971 -23.06 -22.304 1 95.6 ? C7 PE5 414 A 1 HETATM 14 C C8 PE5 . . . O 7 -58.837 -22.688 -23.273 1 89.48 ? C8 PE5 414 A 1 HETATM 15 O O5 PE5 . . . O 7 -58.852 -21.277 -23.553 1 95.91 ? O5 PE5 414 A 1 HETATM 16 C C9 PE5 . . . O 7 -57.591 -20.751 -23.98 1 77.09 ? C9 PE5 414 A 1 HETATM 17 C C10 PE5 . . . O 7 -56.837 -20.179 -22.78 1 70.57 ? C10 PE5 414 A 1 HETATM 18 O O6 PE5 . . . O 7 -56.138 -21.247 -22.138 1 67.48 ? O6 PE5 414 A 1 HETATM 19 C C11 PE5 . . . O 7 -55.92 -21.026 -20.751 1 65.97 ? C11 PE5 414 A 1 HETATM 20 C C12 PE5 . . . O 7 -55.329 -22.296 -20.151 1 64.29 ? C12 PE5 414 A 1 HETATM 21 O O7 PE5 . . . O 7 -56.102 -23.421 -20.557 1 69.94 ? O7 PE5 414 A 1 HETATM 22 C C13 PE5 . . . O 7 -55.541 -24.677 -20.171 1 64 ? C13 PE5 414 A 1 HETATM 23 C C14 PE5 . . . O 7 -56.406 -25.759 -20.805 1 75.32 ? C14 PE5 414 A 1 HETATM 24 O O8 PE5 . . . O 7 -57.138 -25.189 -21.901 1 83.06 ? O8 PE5 414 A 1 HETATM 25 C C15 PE5 . . . O 7 -57.796 -26.174 -22.707 1 77.62 ? C15 PE5 414 A 1 HETATM 26 C C16 PE5 . . . O 7 -57.477 -26.004 -24.197 1 71.04 ? C16 PE5 414 A 1 HETATM 27 O O52 PE5 . . . O 7 -58.486 -25.249 -24.88 1 73.56 ? O52 PE5 414 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #