data_4NAL # _model_server_result.job_id om_ZHjh3DgwW6Pwqn_bDPA _model_server_result.datetime_utc '2024-10-20 01:29:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4nal # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 4NAL # _exptl.entry_id 4NAL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 154.251 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2,3-DIHYDROXY-1,4-DITHIOBUTANE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4NAL _cell.length_a 74.46 _cell.length_b 74.46 _cell.length_c 224.5 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4NAL _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 17_554 x-y+1/3,-y+2/3,-z-1/3 1 0 0 0 -1 0 0 0 -1 0 42.989501 -74.833333 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ILE 34 A ILE 108 1_555 L K K . A K 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.833 ? metalc ? metalc2 A O ALA 35 A ALA 109 1_555 L K K . A K 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.371 ? metalc ? metalc3 A OG SER 38 A SER 112 1_555 L K K . A K 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.663 ? metalc ? metalc4 A O SER 43 A SER 117 1_555 M K K . A K 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.818 ? metalc ? metalc5 A O MET 45 A MET 119 1_555 M K K . A K 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.727 ? metalc ? metalc6 A O VAL 48 A VAL 122 1_555 M K K . A K 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.206 ? metalc ? metalc7 A OE2 GLU 64 A GLU 138 1_555 G CD CD . A CD 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.824 ? metalc ? metalc8 A OE1 GLU 67 A GLU 141 1_555 G CD CD . A CD 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc9 A O ASP 71 A ASP 145 1_555 M K K . A K 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.21 ? metalc ? metalc10 A OD2 ASP 73 A ASP 147 1_555 O K K . A K 414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.716 ? metalc ? metalc11 A OE2 GLU 93 A GLU 167 1_555 E CD CD . A CD 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.497 ? metalc ? metalc12 A O SER 106 A SER 180 1_555 L K K . A K 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.726 ? metalc ? metalc13 A OD2 ASP 115 A ASP 189 1_555 N K K . A K 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.58 ? metalc ? metalc14 A OE1 GLN 164 A GLN 238 1_555 D CD CD . A CD 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc15 A OD1 ASP 187 A ASP 261 1_555 F CD CD . A CD 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? metalc ? metalc16 A ND1 HIS 197 A HIS 271 1_555 H CD CD . A CD 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc17 A OD1 ASN 208 A ASN 282 1_555 K K K . A K 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.939 ? metalc ? metalc18 A O ILE 209 A ILE 283 1_555 K K K . A K 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.7 ? metalc ? metalc19 A OD2 ASP 216 A ASP 290 1_555 I K K . A K 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.872 ? metalc ? metalc20 A OD1 ASP 216 A ASP 290 1_555 I K K . A K 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.113 ? metalc ? metalc21 B O H70 . A H70 401 1_555 D CD CD . A CD 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc22 B N11 H70 . A H70 401 1_555 D CD CD . A CD 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc23 D CD CD . A CD 403 1_555 P O HOH . A HOH 552 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? metalc ? metalc24 E CD CD . A CD 404 1_555 P O HOH . A HOH 548 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc25 F CD CD . A CD 405 1_555 P O HOH . A HOH 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? metalc ? metalc26 F CD CD . A CD 405 1_555 P O HOH . A HOH 517 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.547 ? metalc ? metalc27 F CD CD . A CD 405 1_555 P O HOH . A HOH 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc28 F CD CD . A CD 405 1_555 P O HOH . A HOH 552 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.537 ? metalc ? metalc29 H CD CD . A CD 407 1_555 P O HOH . A HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc30 J K K . A K 409 1_555 P O HOH . A HOH 549 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.037 ? metalc ? metalc31 N K K . A K 413 1_555 P O HOH . A HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.641 ? metalc ? metalc32 N K K . A K 413 1_555 P O HOH . A HOH 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.691 ? metalc ? metalc33 O K K . A K 414 1_555 P O HOH . A HOH 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.675 ? # _chem_comp.formula 'C4 H10 O2 S2' _chem_comp.formula_weight 154.251 _chem_comp.id DTT _chem_comp.mon_nstd_flag . _chem_comp.name 2,3-DIHYDROXY-1,4-DITHIOBUTANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1,4-DITHIOTHREITOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S1 C1 DTT sing 83 n n S1 HS1 DTT sing 84 n n C1 C2 DTT sing 85 n n C1 H11 DTT sing 86 n n C1 H12 DTT sing 87 n n C2 O2 DTT sing 88 n n C2 C3 DTT sing 89 n n C2 H2 DTT sing 90 n n O2 HO2 DTT sing 91 n n C3 O3 DTT sing 92 n n C3 C4 DTT sing 93 n n C3 H3 DTT sing 94 n n O3 HO3 DTT sing 95 n n C4 S4 DTT sing 96 n n C4 H41 DTT sing 97 n n C4 H42 DTT sing 98 n n S4 HS2 DTT sing 99 n n # _atom_sites.entry_id 4NAL _atom_sites.fract_transf_matrix[1][1] 0.01343 _atom_sites.fract_transf_matrix[1][2] 0.007754 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015508 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004454 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 H70 A 1 401 1 H70 LIG . C 3 DTT A 1 402 1 DTT DTT . D 4 CD A 1 403 1 CD CD . E 4 CD A 1 404 2 CD CD . F 4 CD A 1 405 3 CD CD . G 4 CD A 1 406 4 CD CD . H 4 CD A 1 407 5 CD CD . I 5 K A 1 408 6 K K . J 5 K A 1 409 7 K K . K 5 K A 1 410 8 K K . L 5 K A 1 411 9 K K . M 5 K A 1 412 10 K K . N 5 K A 1 413 11 K K . O 5 K A 1 414 12 K K . P 6 HOH A 1 501 13 HOH HOH . P 6 HOH A 2 502 14 HOH HOH . P 6 HOH A 3 503 15 HOH HOH . P 6 HOH A 4 504 16 HOH HOH . P 6 HOH A 5 505 17 HOH HOH . P 6 HOH A 6 506 18 HOH HOH . P 6 HOH A 7 507 21 HOH HOH . P 6 HOH A 8 508 22 HOH HOH . P 6 HOH A 9 509 23 HOH HOH . P 6 HOH A 10 510 24 HOH HOH . P 6 HOH A 11 511 25 HOH HOH . P 6 HOH A 12 512 26 HOH HOH . P 6 HOH A 13 513 27 HOH HOH . P 6 HOH A 14 514 28 HOH HOH . P 6 HOH A 15 515 29 HOH HOH . P 6 HOH A 16 516 31 HOH HOH . P 6 HOH A 17 517 32 HOH HOH . P 6 HOH A 18 518 33 HOH HOH . P 6 HOH A 19 519 34 HOH HOH . P 6 HOH A 20 520 35 HOH HOH . P 6 HOH A 21 521 36 HOH HOH . P 6 HOH A 22 522 37 HOH HOH . P 6 HOH A 23 523 38 HOH HOH . P 6 HOH A 24 524 39 HOH HOH . P 6 HOH A 25 525 40 HOH HOH . P 6 HOH A 26 526 41 HOH HOH . P 6 HOH A 27 527 42 HOH HOH . P 6 HOH A 28 528 43 HOH HOH . P 6 HOH A 29 529 44 HOH HOH . P 6 HOH A 30 530 45 HOH HOH . P 6 HOH A 31 531 46 HOH HOH . P 6 HOH A 32 532 47 HOH HOH . P 6 HOH A 33 533 48 HOH HOH . P 6 HOH A 34 534 49 HOH HOH . P 6 HOH A 35 535 50 HOH HOH . P 6 HOH A 36 536 51 HOH HOH . P 6 HOH A 37 537 52 HOH HOH . P 6 HOH A 38 538 53 HOH HOH . P 6 HOH A 39 539 54 HOH HOH . P 6 HOH A 40 540 55 HOH HOH . P 6 HOH A 41 541 56 HOH HOH . P 6 HOH A 42 542 57 HOH HOH . P 6 HOH A 43 543 58 HOH HOH . P 6 HOH A 44 544 59 HOH HOH . P 6 HOH A 45 545 60 HOH HOH . P 6 HOH A 46 546 61 HOH HOH . P 6 HOH A 47 547 62 HOH HOH . P 6 HOH A 48 548 63 HOH HOH . P 6 HOH A 49 549 65 HOH HOH . P 6 HOH A 50 550 66 HOH HOH . P 6 HOH A 51 551 67 HOH HOH . P 6 HOH A 52 552 68 HOH HOH . P 6 HOH A 53 553 69 HOH HOH . P 6 HOH A 54 554 70 HOH HOH . P 6 HOH A 55 555 71 HOH HOH . P 6 HOH A 56 556 72 HOH HOH . P 6 HOH A 57 557 75 HOH HOH . P 6 HOH A 58 558 76 HOH HOH . P 6 HOH A 59 559 78 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S1 DTT . . . C 3 -1.743 40.92 -21.61 1 58.9 ? S1 DTT 402 A 1 HETATM 2 C C1 DTT . . . C 3 -1.684 39.623 -22.885 1 54.23 ? C1 DTT 402 A 1 HETATM 3 C C2 DTT . . . C 3 -1.474 40.164 -24.294 1 60.23 ? C2 DTT 402 A 1 HETATM 4 O O2 DTT . . . C 3 -2.268 39.415 -25.225 1 70.26 ? O2 DTT 402 A 1 HETATM 5 C C3 DTT . . . C 3 -0.008 40.139 -24.732 1 60.34 ? C3 DTT 402 A 1 HETATM 6 O O3 DTT . . . C 3 0.553 41.446 -24.564 1 67.51 ? O3 DTT 402 A 1 HETATM 7 C C4 DTT . . . C 3 0.821 39.091 -23.989 1 53.34 ? C4 DTT 402 A 1 HETATM 8 S S4 DTT . . . C 3 1.948 39.747 -22.739 1 52.75 ? S4 DTT 402 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 255 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 8 #