data_4NAT # _model_server_result.job_id E8IqCvd4L4NZKbbc8Ltlfw _model_server_result.datetime_utc '2025-07-07 17:13:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4nat # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":201}' # _entry.id 4NAT # _exptl.entry_id 4NAT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 424.321 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1R,2R)-N-(3,4-dichlorobenzyl)-2-(4,6-dimethoxypyrimidin-2-yl)cyclohexanecarboxamide _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4NAT _cell.length_a 76.157 _cell.length_b 127.283 _cell.length_c 126.95 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4NAT _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_654 -x+1,y,-z-1/2 -1 0 0 0 1 0 0 0 -1 76.157 0 -63.475 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 G N N ? 2 J N N # _chem_comp.formula 'C20 H23 Cl2 N3 O3' _chem_comp.formula_weight 424.321 _chem_comp.id 2W5 _chem_comp.mon_nstd_flag . _chem_comp.name (1R,2R)-N-(3,4-dichlorobenzyl)-2-(4,6-dimethoxypyrimidin-2-yl)cyclohexanecarboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O2 2W5 sing 1 n n O2 C3 2W5 sing 2 n n C4 C3 2W5 doub 3 n y C4 C5 2W5 sing 4 n y C3 N10 2W5 sing 5 n y O6 C5 2W5 sing 6 n n O6 C7 2W5 sing 7 n n C5 N8 2W5 doub 8 n y N10 C9 2W5 doub 9 n y N8 C9 2W5 sing 10 n y C13 C11 2W5 sing 11 n n C13 C14 2W5 sing 12 n n C9 C11 2W5 sing 13 n n C11 C17 2W5 sing 14 n n C14 C15 2W5 sing 15 n n C15 C16 2W5 sing 16 n n C25 C24 2W5 doub 17 n y C25 C26 2W5 sing 18 n y C24 C23 2W5 sing 19 n y C17 C16 2W5 sing 20 n n C17 C19 2W5 sing 21 n n N21 C19 2W5 sing 22 n n N21 C22 2W5 sing 23 n n C19 O20 2W5 doub 24 n n CL7 C26 2W5 sing 25 n n C26 C28 2W5 doub 26 n y C23 C22 2W5 sing 27 n n C23 C30 2W5 doub 28 n y C28 C30 2W5 sing 29 n y C28 CL9 2W5 sing 30 n n C1 H1 2W5 sing 31 n n C1 H2 2W5 sing 32 n n C1 H3 2W5 sing 33 n n C7 H4 2W5 sing 34 n n C7 H5 2W5 sing 35 n n C7 H6 2W5 sing 36 n n C11 H7 2W5 sing 37 n n C13 H8 2W5 sing 38 n n C13 H9 2W5 sing 39 n n C14 H10 2W5 sing 40 n n C14 H11 2W5 sing 41 n n C15 H12 2W5 sing 42 n n C15 H13 2W5 sing 43 n n C16 H14 2W5 sing 44 n n C16 H15 2W5 sing 45 n n C22 H16 2W5 sing 46 n n C22 H17 2W5 sing 47 n n C24 H18 2W5 sing 48 n n C30 H19 2W5 sing 49 n n C4 H20 2W5 sing 50 n n C17 H21 2W5 sing 51 n n N21 H22 2W5 sing 52 n n C25 H23 2W5 sing 53 n n # _atom_sites.entry_id 4NAT _atom_sites.fract_transf_matrix[1][1] 0.013131 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007857 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007877 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 2W5 A 1 201 1 2W5 INH . E 3 EPE A 1 202 201 EPE EPE . F 4 ADP A 1 203 214 ADP ADP . G 2 2W5 B 1 201 1 2W5 INH . H 3 EPE B 1 202 201 EPE EPE . I 4 ADP B 1 203 214 ADP ADP . J 2 2W5 C 1 201 1 2W5 INH . K 4 ADP C 1 202 214 ADP ADP . L 5 HOH A 1 301 10 HOH HOH . L 5 HOH A 2 302 13 HOH HOH . L 5 HOH A 3 303 22 HOH HOH . L 5 HOH A 4 304 23 HOH HOH . L 5 HOH A 5 305 36 HOH HOH . L 5 HOH A 6 306 37 HOH HOH . L 5 HOH A 7 307 41 HOH HOH . L 5 HOH A 8 308 43 HOH HOH . L 5 HOH A 9 309 44 HOH HOH . L 5 HOH A 10 310 47 HOH HOH . L 5 HOH A 11 311 52 HOH HOH . L 5 HOH A 12 312 64 HOH HOH . L 5 HOH A 13 313 68 HOH HOH . L 5 HOH A 14 314 73 HOH HOH . L 5 HOH A 15 315 79 HOH HOH . L 5 HOH A 16 316 82 HOH HOH . L 5 HOH A 17 317 86 HOH HOH . L 5 HOH A 18 318 96 HOH HOH . L 5 HOH A 19 319 99 HOH HOH . L 5 HOH A 20 320 100 HOH HOH . L 5 HOH A 21 321 102 HOH HOH . L 5 HOH A 22 322 111 HOH HOH . L 5 HOH A 23 323 114 HOH HOH . L 5 HOH A 24 324 115 HOH HOH . L 5 HOH A 25 325 118 HOH HOH . L 5 HOH A 26 326 124 HOH HOH . L 5 HOH A 27 327 125 HOH HOH . L 5 HOH A 28 328 126 HOH HOH . L 5 HOH A 29 329 132 HOH HOH . L 5 HOH A 30 330 136 HOH HOH . L 5 HOH A 31 331 138 HOH HOH . L 5 HOH A 32 332 139 HOH HOH . L 5 HOH A 33 333 141 HOH HOH . L 5 HOH A 34 334 143 HOH HOH . L 5 HOH A 35 335 150 HOH HOH . M 5 HOH B 1 301 3 HOH HOH . M 5 HOH B 2 302 6 HOH HOH . M 5 HOH B 3 303 11 HOH HOH . M 5 HOH B 4 304 14 HOH HOH . M 5 HOH B 5 305 15 HOH HOH . M 5 HOH B 6 306 17 HOH HOH . M 5 HOH B 7 307 21 HOH HOH . M 5 HOH B 8 308 24 HOH HOH . M 5 HOH B 9 309 25 HOH HOH . M 5 HOH B 10 310 28 HOH HOH . M 5 HOH B 11 311 33 HOH HOH . M 5 HOH B 12 312 35 HOH HOH . M 5 HOH B 13 313 38 HOH HOH . M 5 HOH B 14 314 45 HOH HOH . M 5 HOH B 15 315 48 HOH HOH . M 5 HOH B 16 316 55 HOH HOH . M 5 HOH B 17 317 57 HOH HOH . M 5 HOH B 18 318 59 HOH HOH . M 5 HOH B 19 319 65 HOH HOH . M 5 HOH B 20 320 67 HOH HOH . M 5 HOH B 21 321 69 HOH HOH . M 5 HOH B 22 322 71 HOH HOH . M 5 HOH B 23 323 75 HOH HOH . M 5 HOH B 24 324 76 HOH HOH . M 5 HOH B 25 325 78 HOH HOH . M 5 HOH B 26 326 81 HOH HOH . M 5 HOH B 27 327 87 HOH HOH . M 5 HOH B 28 328 88 HOH HOH . M 5 HOH B 29 329 89 HOH HOH . M 5 HOH B 30 330 90 HOH HOH . M 5 HOH B 31 331 95 HOH HOH . M 5 HOH B 32 332 119 HOH HOH . M 5 HOH B 33 333 122 HOH HOH . M 5 HOH B 34 334 123 HOH HOH . M 5 HOH B 35 335 128 HOH HOH . M 5 HOH B 36 336 129 HOH HOH . M 5 HOH B 37 337 133 HOH HOH . M 5 HOH B 38 338 137 HOH HOH . M 5 HOH B 39 339 140 HOH HOH . M 5 HOH B 40 340 144 HOH HOH . N 5 HOH C 1 301 5 HOH HOH . N 5 HOH C 2 302 7 HOH HOH . N 5 HOH C 3 303 8 HOH HOH . N 5 HOH C 4 304 26 HOH HOH . N 5 HOH C 5 305 30 HOH HOH . N 5 HOH C 6 306 34 HOH HOH . N 5 HOH C 7 307 40 HOH HOH . N 5 HOH C 8 308 42 HOH HOH . N 5 HOH C 9 309 46 HOH HOH . N 5 HOH C 10 310 49 HOH HOH . N 5 HOH C 11 311 50 HOH HOH . N 5 HOH C 12 312 51 HOH HOH . N 5 HOH C 13 313 53 HOH HOH . N 5 HOH C 14 314 58 HOH HOH . N 5 HOH C 15 315 60 HOH HOH . N 5 HOH C 16 316 61 HOH HOH . N 5 HOH C 17 317 62 HOH HOH . N 5 HOH C 18 318 83 HOH HOH . N 5 HOH C 19 319 84 HOH HOH . N 5 HOH C 20 320 85 HOH HOH . N 5 HOH C 21 321 91 HOH HOH . N 5 HOH C 22 322 97 HOH HOH . N 5 HOH C 23 323 98 HOH HOH . N 5 HOH C 24 324 101 HOH HOH . N 5 HOH C 25 325 103 HOH HOH . N 5 HOH C 26 326 105 HOH HOH . N 5 HOH C 27 327 107 HOH HOH . N 5 HOH C 28 328 108 HOH HOH . N 5 HOH C 29 329 109 HOH HOH . N 5 HOH C 30 330 110 HOH HOH . N 5 HOH C 31 331 113 HOH HOH . N 5 HOH C 32 332 116 HOH HOH . N 5 HOH C 33 333 117 HOH HOH . N 5 HOH C 34 334 120 HOH HOH . N 5 HOH C 35 335 121 HOH HOH . N 5 HOH C 36 336 130 HOH HOH . N 5 HOH C 37 337 131 HOH HOH . N 5 HOH C 38 338 134 HOH HOH . N 5 HOH C 39 339 142 HOH HOH . N 5 HOH C 40 340 145 HOH HOH . N 5 HOH C 41 341 146 HOH HOH . N 5 HOH C 42 342 147 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 2W5 . . . D 2 26.611 44.315 -32.505 1 34.67 ? C1 2W5 201 A 1 HETATM 2 C C3 2W5 . . . D 2 24.548 43.596 -31.558 1 31.95 ? C3 2W5 201 A 1 HETATM 3 C C7 2W5 . . . D 2 21.32 40.794 -29.837 1 40.54 ? C7 2W5 201 A 1 HETATM 4 C C9 2W5 . . . D 2 22.736 43.005 -32.81 1 34.84 ? C9 2W5 201 A 1 HETATM 5 C C11 2W5 . . . D 2 21.984 42.7 -34.03 1 32.71 ? C11 2W5 201 A 1 HETATM 6 C C13 2W5 . . . D 2 22.571 41.537 -34.887 1 33.17 ? C13 2W5 201 A 1 HETATM 7 C C14 2W5 . . . D 2 22.208 41.824 -36.347 1 32.17 ? C14 2W5 201 A 1 HETATM 8 C C15 2W5 . . . D 2 20.693 41.583 -36.469 1 34.88 ? C15 2W5 201 A 1 HETATM 9 C C16 2W5 . . . D 2 19.946 42.682 -35.718 1 31.01 ? C16 2W5 201 A 1 HETATM 10 C C19 2W5 . . . D 2 19.838 44.175 -33.608 1 32.09 ? C19 2W5 201 A 1 HETATM 11 C C22 2W5 . . . D 2 18.255 44.941 -32.032 1 34.7 ? C22 2W5 201 A 1 HETATM 12 C C24 2W5 . . . D 2 19.839 44.654 -30.11 1 33.64 ? C24 2W5 201 A 1 HETATM 13 C C30 2W5 . . . D 2 18.823 46.814 -30.604 1 39.5 ? C30 2W5 201 A 1 HETATM 14 O O2 2W5 . . . D 2 25.784 44.161 -31.363 1 31.54 ? O2 2W5 201 A 1 HETATM 15 C C4 2W5 . . . D 2 23.863 43.141 -30.392 1 31.55 ? C4 2W5 201 A 1 HETATM 16 C C5 2W5 . . . D 2 22.596 42.566 -30.527 1 38.7 ? C5 2W5 201 A 1 HETATM 17 O O6 2W5 . . . D 2 21.864 42.089 -29.472 1 45.95 ? O6 2W5 201 A 1 HETATM 18 N N8 2W5 . . . D 2 22.079 42.525 -31.755 1 37.87 ? N8 2W5 201 A 1 HETATM 19 N N10 2W5 . . . D 2 23.978 43.53 -32.758 1 29.98 ? N10 2W5 201 A 1 HETATM 20 C C17 2W5 . . . D 2 20.604 43.162 -34.445 1 32.81 ? C17 2W5 201 A 1 HETATM 21 O O20 2W5 . . . D 2 20.136 45.3 -33.859 1 28.81 ? O20 2W5 201 A 1 HETATM 22 N N21 2W5 . . . D 2 18.913 43.819 -32.685 1 33.71 ? N21 2W5 201 A 1 HETATM 23 C C23 2W5 . . . D 2 19.021 45.469 -30.886 1 34.4 ? C23 2W5 201 A 1 HETATM 24 C C25 2W5 . . . D 2 20.509 45.229 -29.027 1 36.93 ? C25 2W5 201 A 1 HETATM 25 C C26 2W5 . . . D 2 20.297 46.592 -28.752 1 40.92 ? C26 2W5 201 A 1 HETATM 26 CL CL7 2W5 . . . D 2 21.026 47.302 -27.372 1 44.77 ? CL7 2W5 201 A 1 HETATM 27 C C28 2W5 . . . D 2 19.466 47.373 -29.524 1 40.08 ? C28 2W5 201 A 1 HETATM 28 CL CL9 2W5 . . . D 2 19.262 49.062 -29.217 1 50 ? CL9 2W5 201 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 28 #