data_4NAT # _model_server_result.job_id KB3D8FVLi0xGHCyIlg_LVg _model_server_result.datetime_utc '2025-04-21 04:21:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4nat # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":202}' # _entry.id 4NAT # _exptl.entry_id 4NAT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4NAT _cell.length_a 76.157 _cell.length_b 127.283 _cell.length_c 126.95 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4NAT _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_654 -x+1,y,-z-1/2 -1 0 0 0 1 0 0 0 -1 76.157 0 -63.475 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 H N N # _chem_comp.formula 'C8 H18 N2 O4 S' _chem_comp.formula_weight 238.305 _chem_comp.id EPE _chem_comp.mon_nstd_flag . _chem_comp.name '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEPES # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 EPE sing 180 n n N1 C6 EPE sing 181 n n N1 C9 EPE sing 182 n n C2 C3 EPE sing 183 n n C2 H21 EPE sing 184 n n C2 H22 EPE sing 185 n n C3 N4 EPE sing 186 n n C3 H31 EPE sing 187 n n C3 H32 EPE sing 188 n n N4 C5 EPE sing 189 n n N4 C7 EPE sing 190 n n C5 C6 EPE sing 191 n n C5 H51 EPE sing 192 n n C5 H52 EPE sing 193 n n C6 H61 EPE sing 194 n n C6 H62 EPE sing 195 n n C7 C8 EPE sing 196 n n C7 H71 EPE sing 197 n n C7 H72 EPE sing 198 n n C8 O8 EPE sing 199 n n C8 H81 EPE sing 200 n n C8 H82 EPE sing 201 n n O8 HO8 EPE sing 202 n n C9 C10 EPE sing 203 n n C9 H91 EPE sing 204 n n C9 H92 EPE sing 205 n n C10 S EPE sing 206 n n C10 H101 EPE sing 207 n n C10 H102 EPE sing 208 n n S O1S EPE doub 209 n n S O2S EPE doub 210 n n S O3S EPE sing 211 n n O3S HOS3 EPE sing 212 n n # _atom_sites.entry_id 4NAT _atom_sites.fract_transf_matrix[1][1] 0.013131 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007857 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007877 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 2W5 A 1 201 1 2W5 INH . E 3 EPE A 1 202 201 EPE EPE . F 4 ADP A 1 203 214 ADP ADP . G 2 2W5 B 1 201 1 2W5 INH . H 3 EPE B 1 202 201 EPE EPE . I 4 ADP B 1 203 214 ADP ADP . J 2 2W5 C 1 201 1 2W5 INH . K 4 ADP C 1 202 214 ADP ADP . L 5 HOH A 1 301 10 HOH HOH . L 5 HOH A 2 302 13 HOH HOH . L 5 HOH A 3 303 22 HOH HOH . L 5 HOH A 4 304 23 HOH HOH . L 5 HOH A 5 305 36 HOH HOH . L 5 HOH A 6 306 37 HOH HOH . L 5 HOH A 7 307 41 HOH HOH . L 5 HOH A 8 308 43 HOH HOH . L 5 HOH A 9 309 44 HOH HOH . L 5 HOH A 10 310 47 HOH HOH . L 5 HOH A 11 311 52 HOH HOH . L 5 HOH A 12 312 64 HOH HOH . L 5 HOH A 13 313 68 HOH HOH . L 5 HOH A 14 314 73 HOH HOH . L 5 HOH A 15 315 79 HOH HOH . L 5 HOH A 16 316 82 HOH HOH . L 5 HOH A 17 317 86 HOH HOH . L 5 HOH A 18 318 96 HOH HOH . L 5 HOH A 19 319 99 HOH HOH . L 5 HOH A 20 320 100 HOH HOH . L 5 HOH A 21 321 102 HOH HOH . L 5 HOH A 22 322 111 HOH HOH . L 5 HOH A 23 323 114 HOH HOH . L 5 HOH A 24 324 115 HOH HOH . L 5 HOH A 25 325 118 HOH HOH . L 5 HOH A 26 326 124 HOH HOH . L 5 HOH A 27 327 125 HOH HOH . L 5 HOH A 28 328 126 HOH HOH . L 5 HOH A 29 329 132 HOH HOH . L 5 HOH A 30 330 136 HOH HOH . L 5 HOH A 31 331 138 HOH HOH . L 5 HOH A 32 332 139 HOH HOH . L 5 HOH A 33 333 141 HOH HOH . L 5 HOH A 34 334 143 HOH HOH . L 5 HOH A 35 335 150 HOH HOH . M 5 HOH B 1 301 3 HOH HOH . M 5 HOH B 2 302 6 HOH HOH . M 5 HOH B 3 303 11 HOH HOH . M 5 HOH B 4 304 14 HOH HOH . M 5 HOH B 5 305 15 HOH HOH . M 5 HOH B 6 306 17 HOH HOH . M 5 HOH B 7 307 21 HOH HOH . M 5 HOH B 8 308 24 HOH HOH . M 5 HOH B 9 309 25 HOH HOH . M 5 HOH B 10 310 28 HOH HOH . M 5 HOH B 11 311 33 HOH HOH . M 5 HOH B 12 312 35 HOH HOH . M 5 HOH B 13 313 38 HOH HOH . M 5 HOH B 14 314 45 HOH HOH . M 5 HOH B 15 315 48 HOH HOH . M 5 HOH B 16 316 55 HOH HOH . M 5 HOH B 17 317 57 HOH HOH . M 5 HOH B 18 318 59 HOH HOH . M 5 HOH B 19 319 65 HOH HOH . M 5 HOH B 20 320 67 HOH HOH . M 5 HOH B 21 321 69 HOH HOH . M 5 HOH B 22 322 71 HOH HOH . M 5 HOH B 23 323 75 HOH HOH . M 5 HOH B 24 324 76 HOH HOH . M 5 HOH B 25 325 78 HOH HOH . M 5 HOH B 26 326 81 HOH HOH . M 5 HOH B 27 327 87 HOH HOH . M 5 HOH B 28 328 88 HOH HOH . M 5 HOH B 29 329 89 HOH HOH . M 5 HOH B 30 330 90 HOH HOH . M 5 HOH B 31 331 95 HOH HOH . M 5 HOH B 32 332 119 HOH HOH . M 5 HOH B 33 333 122 HOH HOH . M 5 HOH B 34 334 123 HOH HOH . M 5 HOH B 35 335 128 HOH HOH . M 5 HOH B 36 336 129 HOH HOH . M 5 HOH B 37 337 133 HOH HOH . M 5 HOH B 38 338 137 HOH HOH . M 5 HOH B 39 339 140 HOH HOH . M 5 HOH B 40 340 144 HOH HOH . N 5 HOH C 1 301 5 HOH HOH . N 5 HOH C 2 302 7 HOH HOH . N 5 HOH C 3 303 8 HOH HOH . N 5 HOH C 4 304 26 HOH HOH . N 5 HOH C 5 305 30 HOH HOH . N 5 HOH C 6 306 34 HOH HOH . N 5 HOH C 7 307 40 HOH HOH . N 5 HOH C 8 308 42 HOH HOH . N 5 HOH C 9 309 46 HOH HOH . N 5 HOH C 10 310 49 HOH HOH . N 5 HOH C 11 311 50 HOH HOH . N 5 HOH C 12 312 51 HOH HOH . N 5 HOH C 13 313 53 HOH HOH . N 5 HOH C 14 314 58 HOH HOH . N 5 HOH C 15 315 60 HOH HOH . N 5 HOH C 16 316 61 HOH HOH . N 5 HOH C 17 317 62 HOH HOH . N 5 HOH C 18 318 83 HOH HOH . N 5 HOH C 19 319 84 HOH HOH . N 5 HOH C 20 320 85 HOH HOH . N 5 HOH C 21 321 91 HOH HOH . N 5 HOH C 22 322 97 HOH HOH . N 5 HOH C 23 323 98 HOH HOH . N 5 HOH C 24 324 101 HOH HOH . N 5 HOH C 25 325 103 HOH HOH . N 5 HOH C 26 326 105 HOH HOH . N 5 HOH C 27 327 107 HOH HOH . N 5 HOH C 28 328 108 HOH HOH . N 5 HOH C 29 329 109 HOH HOH . N 5 HOH C 30 330 110 HOH HOH . N 5 HOH C 31 331 113 HOH HOH . N 5 HOH C 32 332 116 HOH HOH . N 5 HOH C 33 333 117 HOH HOH . N 5 HOH C 34 334 120 HOH HOH . N 5 HOH C 35 335 121 HOH HOH . N 5 HOH C 36 336 130 HOH HOH . N 5 HOH C 37 337 131 HOH HOH . N 5 HOH C 38 338 134 HOH HOH . N 5 HOH C 39 339 142 HOH HOH . N 5 HOH C 40 340 145 HOH HOH . N 5 HOH C 41 341 146 HOH HOH . N 5 HOH C 42 342 147 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 EPE . . . E 3 13.523 50.713 -40.456 1 50 ? N1 EPE 202 A 1 HETATM 2 C C2 EPE . . . E 3 13.965 49.376 -40.94 1 46.46 ? C2 EPE 202 A 1 HETATM 3 C C3 EPE . . . E 3 15.484 49.257 -40.962 1 45.26 ? C3 EPE 202 A 1 HETATM 4 N N4 EPE . . . E 3 16.202 50.351 -41.655 1 45.08 ? N4 EPE 202 A 1 HETATM 5 C C5 EPE . . . E 3 15.645 51.7 -41.366 1 46.19 ? C5 EPE 202 A 1 HETATM 6 C C6 EPE . . . E 3 14.118 51.781 -41.268 1 47.55 ? C6 EPE 202 A 1 HETATM 7 C C7 EPE . . . E 3 17.648 50.411 -41.367 1 44.57 ? C7 EPE 202 A 1 HETATM 8 C C8 EPE . . . E 3 18.542 49.337 -41.957 1 46.75 ? C8 EPE 202 A 1 HETATM 9 O O8 EPE . . . E 3 18.14 48.046 -41.473 1 43.32 ? O8 EPE 202 A 1 HETATM 10 C C9 EPE . . . E 3 12.048 50.921 -40.493 1 50 ? C9 EPE 202 A 1 HETATM 11 C C10 EPE . . . E 3 11.202 49.705 -40.086 1 50 ? C10 EPE 202 A 1 HETATM 12 S S EPE . . . E 3 9.627 50.146 -39.672 1 50 ? S EPE 202 A 1 HETATM 13 O O1S EPE . . . E 3 9.382 51.352 -40.508 1 50 ? O1S EPE 202 A 1 HETATM 14 O O2S EPE . . . E 3 8.613 49.026 -39.801 1 50 ? O2S EPE 202 A 1 HETATM 15 O O3S EPE . . . E 3 9.622 50.466 -38.222 1 50 ? O3S EPE 202 A 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 15 #