data_4NB0 # _model_server_result.job_id '_ST0blhuqRNm1vSLCsXyyw' _model_server_result.datetime_utc '2025-02-28 02:40:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4nb0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":202}' # _entry.id 4NB0 # _exptl.entry_id 4NB0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 121.158 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CYSTEINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 110.91 _cell.angle_beta 115.24 _cell.angle_gamma 98.27 _cell.entry_id 4NB0 _cell.length_a 40.931 _cell.length_b 44.882 _cell.length_c 46.866 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4NB0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 15 _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 9 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id E _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 203 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.162 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H7 N O2 S' _chem_comp.formula_weight 121.158 _chem_comp.id CYS _chem_comp.mon_nstd_flag y _chem_comp.name CYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA CYS sing 70 n n N H CYS sing 71 n n N H2 CYS sing 72 n n CA C CYS sing 73 n n CA CB CYS sing 74 n n CA HA CYS sing 75 n n C O CYS doub 76 n n C OXT CYS sing 77 n n CB SG CYS sing 78 n n CB HB2 CYS sing 79 n n CB HB3 CYS sing 80 n n SG HG CYS sing 81 n n OXT HXT CYS sing 82 n n # _atom_sites.entry_id 4NB0 _atom_sites.fract_transf_matrix[1][1] 0.024431 _atom_sites.fract_transf_matrix[1][2] 0.003552 _atom_sites.fract_transf_matrix[1][3] 0.014907 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022515 _atom_sites.fract_transf_matrix[2][3] 0.011902 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026684 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 B 1 201 1 SO4 SO4 . D 3 CYS B 1 202 1 CYS CYS . E 3 CYS B 1 203 1 CYS CYS . F 4 GOL B 1 204 1 GOL GOL . G 5 HOH A 1 201 1 HOH HOH . G 5 HOH A 2 202 4 HOH HOH . G 5 HOH A 3 203 6 HOH HOH . G 5 HOH A 4 204 7 HOH HOH . G 5 HOH A 5 205 12 HOH HOH . G 5 HOH A 6 206 14 HOH HOH . G 5 HOH A 7 207 15 HOH HOH . G 5 HOH A 8 208 16 HOH HOH . G 5 HOH A 9 209 17 HOH HOH . G 5 HOH A 10 210 18 HOH HOH . G 5 HOH A 11 211 19 HOH HOH . G 5 HOH A 12 212 21 HOH HOH . G 5 HOH A 13 213 24 HOH HOH . G 5 HOH A 14 214 29 HOH HOH . G 5 HOH A 15 215 30 HOH HOH . G 5 HOH A 16 216 32 HOH HOH . G 5 HOH A 17 217 33 HOH HOH . G 5 HOH A 18 218 36 HOH HOH . G 5 HOH A 19 219 40 HOH HOH . G 5 HOH A 20 220 42 HOH HOH . G 5 HOH A 21 221 44 HOH HOH . G 5 HOH A 22 222 46 HOH HOH . G 5 HOH A 23 223 47 HOH HOH . G 5 HOH A 24 224 49 HOH HOH . G 5 HOH A 25 225 50 HOH HOH . G 5 HOH A 26 226 51 HOH HOH . G 5 HOH A 27 227 54 HOH HOH . G 5 HOH A 28 228 55 HOH HOH . G 5 HOH A 29 229 56 HOH HOH . G 5 HOH A 30 230 63 HOH HOH . G 5 HOH A 31 231 66 HOH HOH . G 5 HOH A 32 232 67 HOH HOH . G 5 HOH A 33 233 68 HOH HOH . G 5 HOH A 34 234 70 HOH HOH . G 5 HOH A 35 235 73 HOH HOH . G 5 HOH A 36 236 80 HOH HOH . G 5 HOH A 37 237 81 HOH HOH . G 5 HOH A 38 238 82 HOH HOH . G 5 HOH A 39 239 83 HOH HOH . G 5 HOH A 40 240 87 HOH HOH . G 5 HOH A 41 241 88 HOH HOH . G 5 HOH A 42 242 92 HOH HOH . G 5 HOH A 43 243 93 HOH HOH . G 5 HOH A 44 244 94 HOH HOH . G 5 HOH A 45 245 95 HOH HOH . G 5 HOH A 46 246 96 HOH HOH . G 5 HOH A 47 247 97 HOH HOH . G 5 HOH A 48 248 98 HOH HOH . G 5 HOH A 49 249 99 HOH HOH . G 5 HOH A 50 250 100 HOH HOH . G 5 HOH A 51 251 101 HOH HOH . G 5 HOH A 52 252 108 HOH HOH . G 5 HOH A 53 253 109 HOH HOH . G 5 HOH A 54 254 110 HOH HOH . G 5 HOH A 55 255 111 HOH HOH . G 5 HOH A 56 256 112 HOH HOH . H 5 HOH B 1 301 2 HOH HOH . H 5 HOH B 2 302 3 HOH HOH . H 5 HOH B 3 303 5 HOH HOH . H 5 HOH B 4 304 8 HOH HOH . H 5 HOH B 5 305 9 HOH HOH . H 5 HOH B 6 306 10 HOH HOH . H 5 HOH B 7 307 11 HOH HOH . H 5 HOH B 8 308 13 HOH HOH . H 5 HOH B 9 309 20 HOH HOH . H 5 HOH B 10 310 22 HOH HOH . H 5 HOH B 11 311 23 HOH HOH . H 5 HOH B 12 312 25 HOH HOH . H 5 HOH B 13 313 26 HOH HOH . H 5 HOH B 14 314 27 HOH HOH . H 5 HOH B 15 315 28 HOH HOH . H 5 HOH B 16 316 31 HOH HOH . H 5 HOH B 17 317 34 HOH HOH . H 5 HOH B 18 318 35 HOH HOH . H 5 HOH B 19 319 37 HOH HOH . H 5 HOH B 20 320 38 HOH HOH . H 5 HOH B 21 321 39 HOH HOH . H 5 HOH B 22 322 41 HOH HOH . H 5 HOH B 23 323 43 HOH HOH . H 5 HOH B 24 324 45 HOH HOH . H 5 HOH B 25 325 48 HOH HOH . H 5 HOH B 26 326 52 HOH HOH . H 5 HOH B 27 327 53 HOH HOH . H 5 HOH B 28 328 57 HOH HOH . H 5 HOH B 29 329 58 HOH HOH . H 5 HOH B 30 330 59 HOH HOH . H 5 HOH B 31 331 60 HOH HOH . H 5 HOH B 32 332 61 HOH HOH . H 5 HOH B 33 333 62 HOH HOH . H 5 HOH B 34 334 64 HOH HOH . H 5 HOH B 35 335 65 HOH HOH . H 5 HOH B 36 336 69 HOH HOH . H 5 HOH B 37 337 71 HOH HOH . H 5 HOH B 38 338 72 HOH HOH . H 5 HOH B 39 339 76 HOH HOH . H 5 HOH B 40 340 78 HOH HOH . H 5 HOH B 41 341 84 HOH HOH . H 5 HOH B 42 342 85 HOH HOH . H 5 HOH B 43 343 86 HOH HOH . H 5 HOH B 44 344 89 HOH HOH . H 5 HOH B 45 345 90 HOH HOH . H 5 HOH B 46 346 91 HOH HOH . H 5 HOH B 47 347 102 HOH HOH . H 5 HOH B 48 348 103 HOH HOH . H 5 HOH B 49 349 104 HOH HOH . H 5 HOH B 50 350 105 HOH HOH . H 5 HOH B 51 351 106 HOH HOH . H 5 HOH B 52 352 107 HOH HOH . H 5 HOH B 53 353 113 HOH HOH . H 5 HOH B 54 354 114 HOH HOH . H 5 HOH B 55 355 115 HOH HOH . H 5 HOH B 56 356 116 HOH HOH . H 5 HOH B 57 357 117 HOH HOH . H 5 HOH B 58 358 118 HOH HOH . H 5 HOH B 59 359 119 HOH HOH . H 5 HOH B 60 360 120 HOH HOH . H 5 HOH B 61 361 121 HOH HOH . H 5 HOH B 62 362 122 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N CYS . . . D 3 -11.008 -10.681 15.285 1 41.4 ? N CYS 202 B 1 HETATM 2 C CA CYS . . . D 3 -10.49 -9.303 15.538 1 44.63 ? CA CYS 202 B 1 HETATM 3 C C CYS . . . D 3 -11.566 -8.18 15.655 1 47.17 ? C CYS 202 B 1 HETATM 4 O O CYS . . . D 3 -11.262 -7.066 16.125 1 37.37 ? O CYS 202 B 1 HETATM 5 C CB CYS . . . D 3 -9.39 -8.998 14.503 1 45.23 ? CB CYS 202 B 1 HETATM 6 S SG CYS . . . D 3 -8.071 -10.253 14.627 1 41.96 ? SG CYS 202 B 1 HETATM 7 O OXT CYS . . . D 3 -12.76 -8.346 15.335 1 39.08 ? OXT CYS 202 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 7 #