data_4NB7
#
_model_server_result.job_id            gvnhehwPvy1NDz5-7IyJYA 
_model_server_result.datetime_utc      '2024-10-19 15:48:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4nb7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":412}' 
#
_entry.id    4NB7 
#
_exptl.entry_id    4NB7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              398.489 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4NB7 
_cell.length_a            177.51 
_cell.length_b            177.51 
_cell.length_c            177.51 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4NB7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        212 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 3 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 
3 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             M 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A ND1 HIS 231 A HIS 231 1_555 B CU CU . A CU 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? 
metalc ? metalc2 A NE2 HIS 234 A HIS 234 1_555 E CU CU . A CU 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? 
metalc ? metalc3 A NE2 HIS 236 A HIS 236 1_555 D CU CU . A CU 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? 
metalc ? metalc4 A NE2 HIS 287 A HIS 287 1_555 D CU CU . A CU 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? 
metalc ? metalc5 A SG CYS 288 A CYS 288 1_555 B CU CU . A CU 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? 
metalc ? metalc6 A NE2 HIS 289 A HIS 289 1_555 C CU CU . A CU 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? 
metalc ? metalc7 A ND1 HIS 293 A HIS 293 1_555 B CU CU . A CU 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.931 ? 
metalc ? metalc8 C CU CU . A CU 402 1_555 T O HOH . A HOH 531 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.624 ? 
#
_chem_comp.formula           'C18 H38 O9' 
_chem_comp.formula_weight    398.489 
_chem_comp.id                PE5 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '2-(2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL;POLYETHYLENE GLYCOL PEG400' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C48 C50 PE5 sing 383 n n 
C48 H481 PE5 sing 384 n n 
C48 H482 PE5 sing 385 n n 
C48 H483 PE5 sing 386 n n 
C50 O1 PE5 sing 387 n n 
C50 H501 PE5 sing 388 n n 
C50 H502 PE5 sing 389 n n 
O1 C1 PE5 sing 390 n n 
C1 C2 PE5 sing 391 n n 
C1 H11 PE5 sing 392 n n 
C1 H12 PE5 sing 393 n n 
C2 O2 PE5 sing 394 n n 
C2 H21 PE5 sing 395 n n 
C2 H22 PE5 sing 396 n n 
O2 C3 PE5 sing 397 n n 
C3 C4 PE5 sing 398 n n 
C3 H31 PE5 sing 399 n n 
C3 H32 PE5 sing 400 n n 
C4 O3 PE5 sing 401 n n 
C4 H41 PE5 sing 402 n n 
C4 H42 PE5 sing 403 n n 
O3 C5 PE5 sing 404 n n 
C5 C6 PE5 sing 405 n n 
C5 H51 PE5 sing 406 n n 
C5 H52A PE5 sing 407 n n 
C6 O4 PE5 sing 408 n n 
C6 H61 PE5 sing 409 n n 
C6 H62 PE5 sing 410 n n 
O4 C7 PE5 sing 411 n n 
C7 C8 PE5 sing 412 n n 
C7 H71 PE5 sing 413 n n 
C7 H72 PE5 sing 414 n n 
C8 O5 PE5 sing 415 n n 
C8 H81 PE5 sing 416 n n 
C8 H82 PE5 sing 417 n n 
O5 C9 PE5 sing 418 n n 
C9 C10 PE5 sing 419 n n 
C9 H91 PE5 sing 420 n n 
C9 H92 PE5 sing 421 n n 
C10 O6 PE5 sing 422 n n 
C10 H101 PE5 sing 423 n n 
C10 H102 PE5 sing 424 n n 
O6 C11 PE5 sing 425 n n 
C11 C12 PE5 sing 426 n n 
C11 H111 PE5 sing 427 n n 
C11 H112 PE5 sing 428 n n 
C12 O7 PE5 sing 429 n n 
C12 H121 PE5 sing 430 n n 
C12 H122 PE5 sing 431 n n 
O7 C13 PE5 sing 432 n n 
C13 C14 PE5 sing 433 n n 
C13 H131 PE5 sing 434 n n 
C13 H132 PE5 sing 435 n n 
C14 O8 PE5 sing 436 n n 
C14 H141 PE5 sing 437 n n 
C14 H142 PE5 sing 438 n n 
O8 C15 PE5 sing 439 n n 
C15 C16 PE5 sing 440 n n 
C15 H151 PE5 sing 441 n n 
C15 H152 PE5 sing 442 n n 
C16 O52 PE5 sing 443 n n 
C16 H161 PE5 sing 444 n n 
C16 H162 PE5 sing 445 n n 
O52 H52 PE5 sing 446 n n 
#
_atom_sites.entry_id                     4NB7 
_atom_sites.fract_transf_matrix[1][1]    0.005633 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005633 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005633 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CU A 1 401 401 CU CU . 
C 2 CU A 1 402 402 CU CU . 
D 2 CU A 1 403 403 CU CU . 
E 2 CU A 1 404 404 CU CU . 
F 3 AZI A 1 405 1001 AZI AZI . 
G 3 AZI A 1 406 1002 AZI AZI . 
H 3 AZI A 1 407 1003 AZI AZI . 
I 3 AZI A 1 408 1004 AZI AZI . 
J 3 AZI A 1 409 1005 AZI AZI . 
K 3 AZI A 1 410 1006 AZI AZI . 
L 4 PG4 A 1 411 2 PG4 PG4 . 
M 5 PE5 A 1 412 1 PE5 PE5 . 
N 6 P6G A 1 413 2 P6G P6G . 
O 7 GOL A 1 414 1 GOL GOL . 
P 7 GOL A 1 415 3 GOL GOL . 
Q 8 7PE A 1 416 1 7PE 7PE . 
R 9 1PE A 1 417 1 1PE 1PE . 
S 9 1PE A 1 418 2 1PE 1PE . 
T 10 HOH A 1 501 1 HOH HOH . 
T 10 HOH A 2 502 2 HOH HOH . 
T 10 HOH A 3 503 3 HOH HOH . 
T 10 HOH A 4 504 4 HOH HOH . 
T 10 HOH A 5 505 5 HOH HOH . 
T 10 HOH A 6 506 6 HOH HOH . 
T 10 HOH A 7 507 7 HOH HOH . 
T 10 HOH A 8 508 9 HOH HOH . 
T 10 HOH A 9 509 10 HOH HOH . 
T 10 HOH A 10 510 11 HOH HOH . 
T 10 HOH A 11 511 12 HOH HOH . 
T 10 HOH A 12 512 13 HOH HOH . 
T 10 HOH A 13 513 14 HOH HOH . 
T 10 HOH A 14 514 15 HOH HOH . 
T 10 HOH A 15 515 16 HOH HOH . 
T 10 HOH A 16 516 17 HOH HOH . 
T 10 HOH A 17 517 18 HOH HOH . 
T 10 HOH A 18 518 20 HOH HOH . 
T 10 HOH A 19 519 21 HOH HOH . 
T 10 HOH A 20 520 22 HOH HOH . 
T 10 HOH A 21 521 23 HOH HOH . 
T 10 HOH A 22 522 24 HOH HOH . 
T 10 HOH A 23 523 25 HOH HOH . 
T 10 HOH A 24 524 26 HOH HOH . 
T 10 HOH A 25 525 27 HOH HOH . 
T 10 HOH A 26 526 28 HOH HOH . 
T 10 HOH A 27 527 29 HOH HOH . 
T 10 HOH A 28 528 30 HOH HOH . 
T 10 HOH A 29 529 32 HOH HOH . 
T 10 HOH A 30 530 33 HOH HOH . 
T 10 HOH A 31 531 35 HOH HOH . 
T 10 HOH A 32 532 36 HOH HOH . 
T 10 HOH A 33 533 37 HOH HOH . 
T 10 HOH A 34 534 38 HOH HOH . 
T 10 HOH A 35 535 39 HOH HOH . 
T 10 HOH A 36 536 40 HOH HOH . 
T 10 HOH A 37 537 41 HOH HOH . 
T 10 HOH A 38 538 42 HOH HOH . 
T 10 HOH A 39 539 43 HOH HOH . 
T 10 HOH A 40 540 44 HOH HOH . 
T 10 HOH A 41 541 45 HOH HOH . 
T 10 HOH A 42 542 47 HOH HOH . 
T 10 HOH A 43 543 48 HOH HOH . 
T 10 HOH A 44 544 49 HOH HOH . 
T 10 HOH A 45 545 50 HOH HOH . 
T 10 HOH A 46 546 51 HOH HOH . 
T 10 HOH A 47 547 55 HOH HOH . 
T 10 HOH A 48 548 56 HOH HOH . 
T 10 HOH A 49 549 57 HOH HOH . 
T 10 HOH A 50 550 58 HOH HOH . 
T 10 HOH A 51 551 59 HOH HOH . 
T 10 HOH A 52 552 60 HOH HOH . 
T 10 HOH A 53 553 61 HOH HOH . 
T 10 HOH A 54 554 62 HOH HOH . 
T 10 HOH A 55 555 63 HOH HOH . 
T 10 HOH A 56 556 64 HOH HOH . 
T 10 HOH A 57 557 65 HOH HOH . 
T 10 HOH A 58 558 66 HOH HOH . 
T 10 HOH A 59 559 67 HOH HOH . 
T 10 HOH A 60 560 68 HOH HOH . 
T 10 HOH A 61 561 69 HOH HOH . 
T 10 HOH A 62 562 70 HOH HOH . 
T 10 HOH A 63 563 71 HOH HOH . 
T 10 HOH A 64 564 72 HOH HOH . 
T 10 HOH A 65 565 73 HOH HOH . 
T 10 HOH A 66 566 74 HOH HOH . 
T 10 HOH A 67 567 75 HOH HOH . 
T 10 HOH A 68 568 76 HOH HOH . 
T 10 HOH A 69 569 77 HOH HOH . 
T 10 HOH A 70 570 78 HOH HOH . 
T 10 HOH A 71 571 79 HOH HOH . 
T 10 HOH A 72 572 80 HOH HOH . 
T 10 HOH A 73 573 81 HOH HOH . 
T 10 HOH A 74 574 82 HOH HOH . 
T 10 HOH A 75 575 83 HOH HOH . 
T 10 HOH A 76 576 84 HOH HOH . 
T 10 HOH A 77 577 85 HOH HOH . 
T 10 HOH A 78 578 86 HOH HOH . 
T 10 HOH A 79 579 87 HOH HOH . 
T 10 HOH A 80 580 88 HOH HOH . 
T 10 HOH A 81 581 89 HOH HOH . 
T 10 HOH A 82 582 90 HOH HOH . 
T 10 HOH A 83 583 91 HOH HOH . 
T 10 HOH A 84 584 92 HOH HOH . 
T 10 HOH A 85 585 93 HOH HOH . 
T 10 HOH A 86 586 94 HOH HOH . 
T 10 HOH A 87 587 95 HOH HOH . 
T 10 HOH A 88 588 96 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C48 PE5 . . . M 5 -62.339 -16.193 -12.839 1 83.87 ? C48 PE5 412 A 1 
HETATM 2 C C50 PE5 . . . M 5 -61.142 -17.021 -13.274 1 96.35 ? C50 PE5 412 A 1 
HETATM 3 O O1 PE5 . . . M 5 -60.607 -16.511 -14.503 1 96.53 ? O1 PE5 412 A 1 
HETATM 4 C C1 PE5 . . . M 5 -59.545 -17.309 -15.037 1 84.66 ? C1 PE5 412 A 1 
HETATM 5 C C2 PE5 . . . M 5 -59.764 -17.493 -16.544 1 88.6 ? C2 PE5 412 A 1 
HETATM 6 O O2 PE5 . . . M 5 -59.135 -18.703 -16.984 1 96.42 ? O2 PE5 412 A 1 
HETATM 7 C C3 PE5 . . . M 5 -59.876 -19.406 -17.988 1 101 ? C3 PE5 412 A 1 
HETATM 8 C C4 PE5 . . . M 5 -59.533 -20.897 -17.906 1 107.98 ? C4 PE5 412 A 1 
HETATM 9 O O3 PE5 . . . M 5 -60.211 -21.636 -18.931 1 112.69 ? O3 PE5 412 A 1 
HETATM 10 C C5 PE5 . . . M 5 -59.814 -23.018 -19.025 1 104.31 ? C5 PE5 412 A 1 
HETATM 11 C C6 PE5 . . . M 5 -60.23 -23.581 -20.393 1 100.5 ? C6 PE5 412 A 1 
HETATM 12 O O4 PE5 . . . M 5 -59.365 -23.101 -21.439 1 96.61 ? O4 PE5 412 A 1 
HETATM 13 C C7 PE5 . . . M 5 -60.047 -22.675 -22.632 1 91.02 ? C7 PE5 412 A 1 
HETATM 14 C C8 PE5 . . . M 5 -59.077 -22.049 -23.648 1 87.08 ? C8 PE5 412 A 1 
HETATM 15 O O5 PE5 . . . M 5 -58.696 -20.702 -23.314 1 90.99 ? O5 PE5 412 A 1 
HETATM 16 C C9 PE5 . . . M 5 -57.324 -20.381 -23.616 1 72.71 ? C9 PE5 412 A 1 
HETATM 17 C C10 PE5 . . . M 5 -56.516 -20.197 -22.323 1 61.83 ? C10 PE5 412 A 1 
HETATM 18 O O6 PE5 . . . M 5 -56.245 -21.474 -21.74 1 63.3 ? O6 PE5 412 A 1 
HETATM 19 C C11 PE5 . . . M 5 -55.916 -21.405 -20.353 1 67.08 ? C11 PE5 412 A 1 
HETATM 20 C C12 PE5 . . . M 5 -55.399 -22.762 -19.879 1 67.29 ? C12 PE5 412 A 1 
HETATM 21 O O7 PE5 . . . M 5 -56.119 -23.803 -20.54 1 73.92 ? O7 PE5 412 A 1 
HETATM 22 C C13 PE5 . . . M 5 -55.745 -25.125 -20.14 1 70.48 ? C13 PE5 412 A 1 
HETATM 23 C C14 PE5 . . . M 5 -56.77 -26.095 -20.735 1 79.73 ? C14 PE5 412 A 1 
HETATM 24 O O8 PE5 . . . M 5 -57.214 -25.615 -22.017 1 85.85 ? O8 PE5 412 A 1 
HETATM 25 C C15 PE5 . . . M 5 -57.888 -26.615 -22.797 1 84.93 ? C15 PE5 412 A 1 
HETATM 26 C C16 PE5 . . . M 5 -57.758 -26.357 -24.306 1 78.72 ? C16 PE5 412 A 1 
HETATM 27 O O52 PE5 . . . M 5 -58.459 -25.166 -24.699 1 79.19 ? O52 PE5 412 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           319 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           27 
#