data_4NB7
#
_model_server_result.job_id            a-IP58ax505uowd10CoNLQ 
_model_server_result.datetime_utc      '2024-11-25 18:55:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4nb7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"P","auth_seq_id":415}' 
#
_entry.id    4NB7 
#
_exptl.entry_id    4NB7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4NB7 
_cell.length_a            177.51 
_cell.length_b            177.51 
_cell.length_c            177.51 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4NB7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        212 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 3 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 
3 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 7 O N N 
? 7 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A ND1 HIS 231 A HIS 231 1_555 B CU CU . A CU 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? 
metalc ? metalc2 A NE2 HIS 234 A HIS 234 1_555 E CU CU . A CU 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? 
metalc ? metalc3 A NE2 HIS 236 A HIS 236 1_555 D CU CU . A CU 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? 
metalc ? metalc4 A NE2 HIS 287 A HIS 287 1_555 D CU CU . A CU 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? 
metalc ? metalc5 A SG CYS 288 A CYS 288 1_555 B CU CU . A CU 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? 
metalc ? metalc6 A NE2 HIS 289 A HIS 289 1_555 C CU CU . A CU 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? 
metalc ? metalc7 A ND1 HIS 293 A HIS 293 1_555 B CU CU . A CU 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.931 ? 
metalc ? metalc8 C CU CU . A CU 402 1_555 T O HOH . A HOH 531 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.624 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 218 n n 
C1 C2 GOL sing 219 n n 
C1 H11 GOL sing 220 n n 
C1 H12 GOL sing 221 n n 
O1 HO1 GOL sing 222 n n 
C2 O2 GOL sing 223 n n 
C2 C3 GOL sing 224 n n 
C2 H2 GOL sing 225 n n 
O2 HO2 GOL sing 226 n n 
C3 O3 GOL sing 227 n n 
C3 H31 GOL sing 228 n n 
C3 H32 GOL sing 229 n n 
O3 HO3 GOL sing 230 n n 
#
_atom_sites.entry_id                     4NB7 
_atom_sites.fract_transf_matrix[1][1]    0.005633 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005633 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005633 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CU A 1 401 401 CU CU . 
C 2 CU A 1 402 402 CU CU . 
D 2 CU A 1 403 403 CU CU . 
E 2 CU A 1 404 404 CU CU . 
F 3 AZI A 1 405 1001 AZI AZI . 
G 3 AZI A 1 406 1002 AZI AZI . 
H 3 AZI A 1 407 1003 AZI AZI . 
I 3 AZI A 1 408 1004 AZI AZI . 
J 3 AZI A 1 409 1005 AZI AZI . 
K 3 AZI A 1 410 1006 AZI AZI . 
L 4 PG4 A 1 411 2 PG4 PG4 . 
M 5 PE5 A 1 412 1 PE5 PE5 . 
N 6 P6G A 1 413 2 P6G P6G . 
O 7 GOL A 1 414 1 GOL GOL . 
P 7 GOL A 1 415 3 GOL GOL . 
Q 8 7PE A 1 416 1 7PE 7PE . 
R 9 1PE A 1 417 1 1PE 1PE . 
S 9 1PE A 1 418 2 1PE 1PE . 
T 10 HOH A 1 501 1 HOH HOH . 
T 10 HOH A 2 502 2 HOH HOH . 
T 10 HOH A 3 503 3 HOH HOH . 
T 10 HOH A 4 504 4 HOH HOH . 
T 10 HOH A 5 505 5 HOH HOH . 
T 10 HOH A 6 506 6 HOH HOH . 
T 10 HOH A 7 507 7 HOH HOH . 
T 10 HOH A 8 508 9 HOH HOH . 
T 10 HOH A 9 509 10 HOH HOH . 
T 10 HOH A 10 510 11 HOH HOH . 
T 10 HOH A 11 511 12 HOH HOH . 
T 10 HOH A 12 512 13 HOH HOH . 
T 10 HOH A 13 513 14 HOH HOH . 
T 10 HOH A 14 514 15 HOH HOH . 
T 10 HOH A 15 515 16 HOH HOH . 
T 10 HOH A 16 516 17 HOH HOH . 
T 10 HOH A 17 517 18 HOH HOH . 
T 10 HOH A 18 518 20 HOH HOH . 
T 10 HOH A 19 519 21 HOH HOH . 
T 10 HOH A 20 520 22 HOH HOH . 
T 10 HOH A 21 521 23 HOH HOH . 
T 10 HOH A 22 522 24 HOH HOH . 
T 10 HOH A 23 523 25 HOH HOH . 
T 10 HOH A 24 524 26 HOH HOH . 
T 10 HOH A 25 525 27 HOH HOH . 
T 10 HOH A 26 526 28 HOH HOH . 
T 10 HOH A 27 527 29 HOH HOH . 
T 10 HOH A 28 528 30 HOH HOH . 
T 10 HOH A 29 529 32 HOH HOH . 
T 10 HOH A 30 530 33 HOH HOH . 
T 10 HOH A 31 531 35 HOH HOH . 
T 10 HOH A 32 532 36 HOH HOH . 
T 10 HOH A 33 533 37 HOH HOH . 
T 10 HOH A 34 534 38 HOH HOH . 
T 10 HOH A 35 535 39 HOH HOH . 
T 10 HOH A 36 536 40 HOH HOH . 
T 10 HOH A 37 537 41 HOH HOH . 
T 10 HOH A 38 538 42 HOH HOH . 
T 10 HOH A 39 539 43 HOH HOH . 
T 10 HOH A 40 540 44 HOH HOH . 
T 10 HOH A 41 541 45 HOH HOH . 
T 10 HOH A 42 542 47 HOH HOH . 
T 10 HOH A 43 543 48 HOH HOH . 
T 10 HOH A 44 544 49 HOH HOH . 
T 10 HOH A 45 545 50 HOH HOH . 
T 10 HOH A 46 546 51 HOH HOH . 
T 10 HOH A 47 547 55 HOH HOH . 
T 10 HOH A 48 548 56 HOH HOH . 
T 10 HOH A 49 549 57 HOH HOH . 
T 10 HOH A 50 550 58 HOH HOH . 
T 10 HOH A 51 551 59 HOH HOH . 
T 10 HOH A 52 552 60 HOH HOH . 
T 10 HOH A 53 553 61 HOH HOH . 
T 10 HOH A 54 554 62 HOH HOH . 
T 10 HOH A 55 555 63 HOH HOH . 
T 10 HOH A 56 556 64 HOH HOH . 
T 10 HOH A 57 557 65 HOH HOH . 
T 10 HOH A 58 558 66 HOH HOH . 
T 10 HOH A 59 559 67 HOH HOH . 
T 10 HOH A 60 560 68 HOH HOH . 
T 10 HOH A 61 561 69 HOH HOH . 
T 10 HOH A 62 562 70 HOH HOH . 
T 10 HOH A 63 563 71 HOH HOH . 
T 10 HOH A 64 564 72 HOH HOH . 
T 10 HOH A 65 565 73 HOH HOH . 
T 10 HOH A 66 566 74 HOH HOH . 
T 10 HOH A 67 567 75 HOH HOH . 
T 10 HOH A 68 568 76 HOH HOH . 
T 10 HOH A 69 569 77 HOH HOH . 
T 10 HOH A 70 570 78 HOH HOH . 
T 10 HOH A 71 571 79 HOH HOH . 
T 10 HOH A 72 572 80 HOH HOH . 
T 10 HOH A 73 573 81 HOH HOH . 
T 10 HOH A 74 574 82 HOH HOH . 
T 10 HOH A 75 575 83 HOH HOH . 
T 10 HOH A 76 576 84 HOH HOH . 
T 10 HOH A 77 577 85 HOH HOH . 
T 10 HOH A 78 578 86 HOH HOH . 
T 10 HOH A 79 579 87 HOH HOH . 
T 10 HOH A 80 580 88 HOH HOH . 
T 10 HOH A 81 581 89 HOH HOH . 
T 10 HOH A 82 582 90 HOH HOH . 
T 10 HOH A 83 583 91 HOH HOH . 
T 10 HOH A 84 584 92 HOH HOH . 
T 10 HOH A 85 585 93 HOH HOH . 
T 10 HOH A 86 586 94 HOH HOH . 
T 10 HOH A 87 587 95 HOH HOH . 
T 10 HOH A 88 588 96 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . P 7 -61.99 -8.162 -31.875 1 81.51 ? C1 GOL 415 A 1 
HETATM 2 O O1 GOL . . . P 7 -63.129 -8.593 -31.146 1 87.07 ? O1 GOL 415 A 1 
HETATM 3 C C2 GOL . . . P 7 -60.837 -7.918 -30.896 1 85.97 ? C2 GOL 415 A 1 
HETATM 4 O O2 GOL . . . P 7 -61.354 -7.493 -29.644 1 85.82 ? O2 GOL 415 A 1 
HETATM 5 C C3 GOL . . . P 7 -59.828 -6.897 -31.435 1 82.46 ? C3 GOL 415 A 1 
HETATM 6 O O3 GOL . . . P 7 -59.414 -7.263 -32.736 1 85.12 ? O3 GOL 415 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           273 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#