data_4NC3 # _model_server_result.job_id o5tw5RhhGdoZmFW_G0UBKQ _model_server_result.datetime_utc '2024-11-04 22:43:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4nc3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1202}' # _entry.id 4NC3 # _exptl.entry_id 4NC3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 581.661 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Ergotamine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation R106L _entity.pdbx_fragment BRIL _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4NC3 _cell.length_a 61.5 _cell.length_b 122.2 _cell.length_c 168.5 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4NC3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 103 A CYS 128 1_555 A SG CYS 182 A CYS 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 A SG CYS 366 A CYS 350 1_555 A SG CYS 369 A CYS 353 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 A SG CYS 413 A CYS 397 1_555 B C1 PLM . A PLM 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.655 ? # _chem_comp.formula 'C33 H35 N5 O5' _chem_comp.formula_weight 581.661 _chem_comp.id ERM _chem_comp.mon_nstd_flag . _chem_comp.name Ergotamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C23 C22 ERM sing 279 n n C23 C24 ERM sing 280 n n C26 C17 ERM sing 281 n n C22 C21 ERM sing 282 n n O2 C17 ERM sing 283 n n O2 C25 ERM sing 284 n n C24 C25 ERM sing 285 n n C24 N5 ERM sing 286 n n C21 N5 ERM sing 287 n n C17 N3 ERM sing 288 n n C17 C18 ERM sing 289 n n C25 O5 ERM sing 290 n n C25 N4 ERM sing 291 n n N3 C16 ERM sing 292 n n N5 C20 ERM sing 293 n n C5 N2 ERM sing 294 n n C5 C6 ERM sing 295 n n C15 N2 ERM sing 296 n n C18 N4 ERM sing 297 n n C18 O3 ERM doub 298 n n C16 C6 ERM sing 299 n n C16 O1 ERM doub 300 n n N4 C19 ERM sing 301 n n N2 C4 ERM sing 302 n n C6 C7 ERM sing 303 n n C20 O4 ERM doub 304 n n C20 C19 ERM sing 305 n n C19 C27 ERM sing 306 n n C7 C8 ERM doub 307 n n C4 C3 ERM sing 308 n n C4 C8 ERM sing 309 n n C3 C2 ERM sing 310 n n C8 C9 ERM sing 311 n n C27 C28 ERM sing 312 n n C2 C1 ERM doub 313 n y C2 C14 ERM sing 314 n y C28 C29 ERM doub 315 n y C28 C33 ERM sing 316 n y C9 C14 ERM doub 317 n y C9 C10 ERM sing 318 n y C29 C30 ERM sing 319 n y C33 C32 ERM doub 320 n y C1 N1 ERM sing 321 n y C14 C13 ERM sing 322 n y C30 C31 ERM doub 323 n y C10 C11 ERM doub 324 n y C32 C31 ERM sing 325 n y N1 C13 ERM sing 326 n y C13 C12 ERM doub 327 n y C11 C12 ERM sing 328 n y C1 H1 ERM sing 329 n n N1 H2 ERM sing 330 n n C10 H3 ERM sing 331 n n C11 H4 ERM sing 332 n n C12 H5 ERM sing 333 n n C15 H6 ERM sing 334 n n C15 H7 ERM sing 335 n n C15 H8 ERM sing 336 n n C19 H9 ERM sing 337 n n C21 H11 ERM sing 338 n n C21 H12 ERM sing 339 n n C22 H13 ERM sing 340 n n C22 H14 ERM sing 341 n n C23 H15 ERM sing 342 n n C23 H16 ERM sing 343 n n C24 H17 ERM sing 344 n n C26 H18 ERM sing 345 n n C26 H19 ERM sing 346 n n C26 H20 ERM sing 347 n n C27 H21 ERM sing 348 n n C27 H22 ERM sing 349 n n C29 H23 ERM sing 350 n n C3 H24 ERM sing 351 n n C3 H25 ERM sing 352 n n N3 H26 ERM sing 353 n n C30 H27 ERM sing 354 n n C31 H28 ERM sing 355 n n C32 H29 ERM sing 356 n n C33 H30 ERM sing 357 n n C4 H31 ERM sing 358 n n C5 H32 ERM sing 359 n n C5 H33 ERM sing 360 n n O5 H34 ERM sing 361 n n C6 H35 ERM sing 362 n n C7 H36 ERM sing 363 n n # _atom_sites.entry_id 4NC3 _atom_sites.fract_transf_matrix[1][1] 0.01626 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008183 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005935 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PLM A 1 1201 501 PLM PLM . C 3 ERM A 1 1202 1 ERM ERM . D 4 CLR A 1 1203 2 CLR CLR . E 5 OLC A 1 1204 3 OLC OLC . F 5 OLC A 1 1205 5 OLC OLC . G 6 PEG A 1 1206 9 PEG PEG . H 5 OLC A 1 1207 2 OLC OLC . I 5 OLC A 1 1208 3 OLC OLC . J 7 TRS A 1 1209 1 TRS TRS . K 8 OLA A 1 1210 1 OLA OLA . L 8 OLA A 1 1211 2 OLA OLA . M 8 OLA A 1 1212 3 OLA OLA . N 9 DGA A 1 1213 1 DGA DGA . O 9 DGA A 1 1214 2 DGA DGA . P 10 HOH A 1 1301 12 HOH HOH . P 10 HOH A 2 1302 5 HOH HOH . P 10 HOH A 3 1303 7 HOH HOH . P 10 HOH A 4 1304 8 HOH HOH . P 10 HOH A 5 1305 10 HOH HOH . P 10 HOH A 6 1306 11 HOH HOH . P 10 HOH A 7 1307 12 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 ERM . . . C 3 -23.207 -14.779 5.258 1 71.97 ? C1 ERM 1202 A 1 HETATM 2 N N1 ERM . . . C 3 -23.981 -13.841 5.853 1 73.37 ? N1 ERM 1202 A 1 HETATM 3 O O1 ERM . . . C 3 -21.345 -19.525 11.781 1 75.19 ? O1 ERM 1202 A 1 HETATM 4 C C10 ERM . . . C 3 -23.417 -14.936 9.772 1 62.58 ? C10 ERM 1202 A 1 HETATM 5 C C11 ERM . . . C 3 -24.263 -13.829 9.591 1 68.26 ? C11 ERM 1202 A 1 HETATM 6 C C12 ERM . . . C 3 -24.531 -13.36 8.274 1 65.04 ? C12 ERM 1202 A 1 HETATM 7 C C13 ERM . . . C 3 -23.956 -14.004 7.241 1 69.42 ? C13 ERM 1202 A 1 HETATM 8 C C14 ERM . . . C 3 -23.12 -15.104 7.428 1 70.11 ? C14 ERM 1202 A 1 HETATM 9 C C15 ERM . . . C 3 -21.108 -19.722 6.479 1 69.63 ? C15 ERM 1202 A 1 HETATM 10 C C16 ERM . . . C 3 -20.336 -19.066 11.301 1 68 ? C16 ERM 1202 A 1 HETATM 11 C C17 ERM . . . C 3 -19.079 -19.801 13.277 1 61.17 ? C17 ERM 1202 A 1 HETATM 12 C C18 ERM . . . C 3 -20.048 -19.195 14.262 1 61.71 ? C18 ERM 1202 A 1 HETATM 13 C C19 ERM . . . C 3 -21.989 -19.995 15.47 1 66.56 ? C19 ERM 1202 A 1 HETATM 14 N N2 ERM . . . C 3 -20.898 -18.702 7.541 1 61.07 ? N2 ERM 1202 A 1 HETATM 15 C C2 ERM . . . C 3 -22.648 -15.596 6.197 1 73.93 ? C2 ERM 1202 A 1 HETATM 16 O O2 ERM . . . C 3 -19.492 -21.169 13.213 1 61.15 ? O2 ERM 1202 A 1 HETATM 17 C C20 ERM . . . C 3 -22.348 -21.316 16.131 1 62.66 ? C20 ERM 1202 A 1 HETATM 18 C C21 ERM . . . C 3 -21.933 -23.737 16.4 1 65.76 ? C21 ERM 1202 A 1 HETATM 19 C C22 ERM . . . C 3 -21.723 -24.674 15.235 1 65.08 ? C22 ERM 1202 A 1 HETATM 20 C C23 ERM . . . C 3 -20.639 -23.987 14.353 1 58.06 ? C23 ERM 1202 A 1 HETATM 21 C C24 ERM . . . C 3 -20.578 -22.568 14.942 1 67.44 ? C24 ERM 1202 A 1 HETATM 22 C C25 ERM . . . C 3 -20.705 -21.456 13.916 1 68.53 ? C25 ERM 1202 A 1 HETATM 23 C C26 ERM . . . C 3 -17.64 -19.624 13.724 1 62.49 ? C26 ERM 1202 A 1 HETATM 24 C C27 ERM . . . C 3 -23.178 -19.432 14.749 1 71.41 ? C27 ERM 1202 A 1 HETATM 25 C C28 ERM . . . C 3 -24.012 -18.562 15.664 1 74.14 ? C28 ERM 1202 A 1 HETATM 26 C C29 ERM . . . C 3 -23.451 -17.439 16.275 1 83.38 ? C29 ERM 1202 A 1 HETATM 27 C C3 ERM . . . C 3 -21.729 -16.778 6.157 1 75.29 ? C3 ERM 1202 A 1 HETATM 28 N N3 ERM . . . C 3 -19.159 -19.15 11.962 1 66.47 ? N3 ERM 1202 A 1 HETATM 29 O O3 ERM . . . C 3 -20.043 -18.061 14.692 1 61.39 ? O3 ERM 1202 A 1 HETATM 30 C C30 ERM . . . C 3 -24.228 -16.64 17.113 1 85.53 ? C30 ERM 1202 A 1 HETATM 31 C C31 ERM . . . C 3 -25.568 -16.962 17.338 1 79.24 ? C31 ERM 1202 A 1 HETATM 32 C C32 ERM . . . C 3 -26.128 -18.082 16.726 1 81.29 ? C32 ERM 1202 A 1 HETATM 33 C C33 ERM . . . C 3 -25.351 -18.881 15.887 1 77.04 ? C33 ERM 1202 A 1 HETATM 34 C C4 ERM . . . C 3 -21.926 -17.607 7.478 1 63.65 ? C4 ERM 1202 A 1 HETATM 35 N N4 ERM . . . C 3 -20.899 -20.175 14.562 1 65.09 ? N4 ERM 1202 A 1 HETATM 36 O O4 ERM . . . C 3 -23.283 -21.359 16.938 1 64.25 ? O4 ERM 1202 A 1 HETATM 37 C C5 ERM . . . C 3 -20.849 -19.4 8.867 1 64.92 ? C5 ERM 1202 A 1 HETATM 38 N N5 ERM . . . C 3 -21.688 -22.417 15.85 1 62.08 ? N5 ERM 1202 A 1 HETATM 39 O O5 ERM . . . C 3 -21.747 -21.712 13.035 1 66.26 ? O5 ERM 1202 A 1 HETATM 40 C C6 ERM . . . C 3 -20.41 -18.391 9.896 1 56.44 ? C6 ERM 1202 A 1 HETATM 41 C C7 ERM . . . C 3 -21.287 -17.17 9.864 1 70.62 ? C7 ERM 1202 A 1 HETATM 42 C C8 ERM . . . C 3 -21.903 -16.787 8.751 1 68.91 ? C8 ERM 1202 A 1 HETATM 43 C C9 ERM . . . C 3 -22.826 -15.598 8.707 1 60.53 ? C9 ERM 1202 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 43 #