data_4NC3 # _model_server_result.job_id qWPYvNXnqFKOOkF_q3je-A _model_server_result.datetime_utc '2024-11-26 17:58:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4nc3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1204}' # _entry.id 4NC3 # _exptl.entry_id 4NC3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4NC3 _cell.length_a 61.5 _cell.length_b 122.2 _cell.length_c 168.5 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4NC3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N ? 5 H N N ? 5 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 103 A CYS 128 1_555 A SG CYS 182 A CYS 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 A SG CYS 366 A CYS 350 1_555 A SG CYS 369 A CYS 353 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 A SG CYS 413 A CYS 397 1_555 B C1 PLM . A PLM 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.655 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 571 n n C10 C9 OLC doub 572 n n C10 C11 OLC sing 573 n n C9 C8 OLC sing 574 n n C17 C16 OLC sing 575 z n C11 C12 OLC sing 576 n n C8 C7 OLC sing 577 n n C24 C22 OLC sing 578 n n C24 O25 OLC sing 579 n n C16 C15 OLC sing 580 n n C12 C13 OLC sing 581 n n C7 C6 OLC sing 582 n n C15 C14 OLC sing 583 n n C13 C14 OLC sing 584 n n C6 C5 OLC sing 585 n n C5 C4 OLC sing 586 n n C4 C3 OLC sing 587 n n C3 C2 OLC sing 588 n n C2 C1 OLC sing 589 n n C21 C22 OLC sing 590 n n C21 O20 OLC sing 591 n n C1 O19 OLC doub 592 n n C1 O20 OLC sing 593 n n C22 O23 OLC sing 594 n n C18 H18 OLC sing 595 n n C18 H18A OLC sing 596 n n C18 H18B OLC sing 597 n n C10 H10 OLC sing 598 n n C9 H9 OLC sing 599 n n C17 H17 OLC sing 600 n n C17 H17A OLC sing 601 n n C11 H11 OLC sing 602 n n C11 H11A OLC sing 603 n n C8 H8 OLC sing 604 n n C8 H8A OLC sing 605 n n C24 H24 OLC sing 606 n n C24 H24A OLC sing 607 n n C16 H16 OLC sing 608 n n C16 H16A OLC sing 609 n n C12 H12 OLC sing 610 n n C12 H12A OLC sing 611 n n C7 H7 OLC sing 612 n n C7 H7A OLC sing 613 n n C15 H15 OLC sing 614 n n C15 H15A OLC sing 615 n n C13 H13 OLC sing 616 n n C13 H13A OLC sing 617 n n C6 H6 OLC sing 618 n n C6 H6A OLC sing 619 n n C14 H14 OLC sing 620 n n C14 H14A OLC sing 621 n n C5 H5 OLC sing 622 n n C5 H5A OLC sing 623 n n C4 H4 OLC sing 624 n n C4 H4A OLC sing 625 n n C3 H3 OLC sing 626 n n C3 H3A OLC sing 627 n n C2 H2 OLC sing 628 n n C2 H2A OLC sing 629 n n C21 H21 OLC sing 630 n n C21 H21A OLC sing 631 n n C22 H22 OLC sing 632 n n O25 HO25 OLC sing 633 n n O23 HO23 OLC sing 634 n n # _atom_sites.entry_id 4NC3 _atom_sites.fract_transf_matrix[1][1] 0.01626 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008183 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005935 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PLM A 1 1201 501 PLM PLM . C 3 ERM A 1 1202 1 ERM ERM . D 4 CLR A 1 1203 2 CLR CLR . E 5 OLC A 1 1204 3 OLC OLC . F 5 OLC A 1 1205 5 OLC OLC . G 6 PEG A 1 1206 9 PEG PEG . H 5 OLC A 1 1207 2 OLC OLC . I 5 OLC A 1 1208 3 OLC OLC . J 7 TRS A 1 1209 1 TRS TRS . K 8 OLA A 1 1210 1 OLA OLA . L 8 OLA A 1 1211 2 OLA OLA . M 8 OLA A 1 1212 3 OLA OLA . N 9 DGA A 1 1213 1 DGA DGA . O 9 DGA A 1 1214 2 DGA DGA . P 10 HOH A 1 1301 12 HOH HOH . P 10 HOH A 2 1302 5 HOH HOH . P 10 HOH A 3 1303 7 HOH HOH . P 10 HOH A 4 1304 8 HOH HOH . P 10 HOH A 5 1305 10 HOH HOH . P 10 HOH A 6 1306 11 HOH HOH . P 10 HOH A 7 1307 12 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 OLC . . . E 5 -42.12 -19.64 -2.795 1 106.38 ? C10 OLC 1204 A 1 HETATM 2 C C9 OLC . . . E 5 -42.063 -19.44 -4.166 1 108.7 ? C9 OLC 1204 A 1 HETATM 3 C C11 OLC . . . E 5 -40.918 -19.32 -1.939 1 105.06 ? C11 OLC 1204 A 1 HETATM 4 C C8 OLC . . . E 5 -40.716 -19.573 -4.927 1 70.19 ? C8 OLC 1204 A 1 HETATM 5 C C24 OLC . . . E 5 -35.038 -14.825 -13.746 1 96.54 ? C24 OLC 1204 A 1 HETATM 6 C C12 OLC . . . E 5 -39.918 -20.476 -1.973 1 100.85 ? C12 OLC 1204 A 1 HETATM 7 C C7 OLC . . . E 5 -40.897 -19.202 -6.392 1 60.12 ? C7 OLC 1204 A 1 HETATM 8 C C6 OLC . . . E 5 -39.581 -19.561 -7.159 1 63.47 ? C6 OLC 1204 A 1 HETATM 9 C C5 OLC . . . E 5 -38.469 -18.547 -6.837 1 58.88 ? C5 OLC 1204 A 1 HETATM 10 C C4 OLC . . . E 5 -37.097 -19.133 -7.311 1 74.64 ? C4 OLC 1204 A 1 HETATM 11 C C3 OLC . . . E 5 -36.125 -17.97 -7.573 1 76.02 ? C3 OLC 1204 A 1 HETATM 12 C C2 OLC . . . E 5 -35.058 -18.4 -8.58 1 76.68 ? C2 OLC 1204 A 1 HETATM 13 C C21 OLC . . . E 5 -34.877 -15.829 -11.475 1 85.03 ? C21 OLC 1204 A 1 HETATM 14 C C1 OLC . . . E 5 -34.666 -17.162 -9.475 1 88.85 ? C1 OLC 1204 A 1 HETATM 15 C C22 OLC . . . E 5 -35.761 -15.641 -12.705 1 91.9 ? C22 OLC 1204 A 1 HETATM 16 O O19 OLC . . . E 5 -33.651 -16.521 -9.233 1 88.33 ? O19 OLC 1204 A 1 HETATM 17 O O25 OLC . . . E 5 -34.778 -15.612 -14.883 1 92.85 ? O25 OLC 1204 A 1 HETATM 18 O O23 OLC . . . E 5 -36.093 -16.897 -13.23 1 95.09 ? O23 OLC 1204 A 1 HETATM 19 O O20 OLC . . . E 5 -35.465 -16.825 -10.614 1 90.25 ? O20 OLC 1204 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 19 #