data_4NC3 # _model_server_result.job_id tfIn8HuB1MOCZiP-KffT9Q _model_server_result.datetime_utc '2024-11-04 22:42:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4nc3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":1213}' # _entry.id 4NC3 # _exptl.entry_id 4NC3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 625.018 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIACYL GLYCEROL' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4NC3 _cell.length_a 61.5 _cell.length_b 122.2 _cell.length_c 168.5 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4NC3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 9 N N N ? 9 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 103 A CYS 128 1_555 A SG CYS 182 A CYS 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 A SG CYS 366 A CYS 350 1_555 A SG CYS 369 A CYS 353 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 A SG CYS 413 A CYS 397 1_555 B C1 PLM . A PLM 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.655 ? # _chem_comp.formula 'C39 H76 O5' _chem_comp.formula_weight 625.018 _chem_comp.id DGA _chem_comp.mon_nstd_flag . _chem_comp.name 'DIACYL GLYCEROL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CA1 CA2 DGA sing 160 n n CA1 OA1 DGA doub 161 n n CA1 OG1 DGA sing 162 n n CA2 CA3 DGA sing 163 n n CA2 HA21 DGA sing 164 n n CA2 HA22 DGA sing 165 n n CA3 CA4 DGA sing 166 n n CA3 HA31 DGA sing 167 n n CA3 HA32 DGA sing 168 n n CA4 CA5 DGA sing 169 n n CA4 HA41 DGA sing 170 n n CA4 HA42 DGA sing 171 n n CA5 CA6 DGA sing 172 n n CA5 HA51 DGA sing 173 n n CA5 HA52 DGA sing 174 n n CA6 CA7 DGA sing 175 n n CA6 HA61 DGA sing 176 n n CA6 HA62 DGA sing 177 n n CA7 CA8 DGA sing 178 n n CA7 HA71 DGA sing 179 n n CA7 HA72 DGA sing 180 n n CA8 CA9 DGA sing 181 n n CA8 HA81 DGA sing 182 n n CA8 HA82 DGA sing 183 n n CA9 CAA DGA sing 184 n n CA9 HA91 DGA sing 185 n n CA9 HA92 DGA sing 186 n n CAA CBA DGA sing 187 n n CAA HAT1 DGA sing 188 n n CAA HAT2 DGA sing 189 n n CBA CCA DGA sing 190 n n CBA HAE1 DGA sing 191 n n CBA HAE2 DGA sing 192 n n CCA CDA DGA sing 193 n n CCA HAW1 DGA sing 194 n n CCA HAW2 DGA sing 195 n n CDA CEA DGA sing 196 n n CDA HAH1 DGA sing 197 n n CDA HAH2 DGA sing 198 n n CEA CFA DGA sing 199 n n CEA HAF1 DGA sing 200 n n CEA HAF2 DGA sing 201 n n CFA CGA DGA sing 202 n n CFA HAN1 DGA sing 203 n n CFA HAN2 DGA sing 204 n n CGA CHA DGA sing 205 n n CGA HAS1 DGA sing 206 n n CGA HAS2 DGA sing 207 n n CHA CIA DGA sing 208 n n CHA HAV1 DGA sing 209 n n CHA HAV2 DGA sing 210 n n CIA HAG1 DGA sing 211 n n CIA HAG2 DGA sing 212 n n CIA HAG3 DGA sing 213 n n CB1 CB2 DGA sing 214 n n CB1 OB1 DGA doub 215 n n CB1 OG2 DGA sing 216 n n CB2 CB3 DGA sing 217 n n CB2 HB21 DGA sing 218 n n CB2 HB22 DGA sing 219 n n CB3 CB4 DGA sing 220 n n CB3 HB31 DGA sing 221 n n CB3 HB32 DGA sing 222 n n CB4 CB5 DGA sing 223 n n CB4 HB41 DGA sing 224 n n CB4 HB42 DGA sing 225 n n CB5 CB6 DGA sing 226 n n CB5 HB51 DGA sing 227 n n CB5 HB52 DGA sing 228 n n CB6 CB7 DGA sing 229 n n CB6 HB61 DGA sing 230 n n CB6 HB62 DGA sing 231 n n CB7 CB8 DGA sing 232 n n CB7 HB71 DGA sing 233 n n CB7 HB72 DGA sing 234 n n CB8 CB9 DGA sing 235 n n CB8 HB81 DGA sing 236 n n CB8 HB82 DGA sing 237 n n CB9 CAB DGA sing 238 n n CB9 HB91 DGA sing 239 n n CB9 HB92 DGA sing 240 n n CAB CBB DGA sing 241 n n CAB HBT1 DGA sing 242 n n CAB HBT2 DGA sing 243 n n CBB CCB DGA sing 244 n n CBB HBE1 DGA sing 245 n n CBB HBE2 DGA sing 246 n n CCB CDB DGA sing 247 n n CCB HBW1 DGA sing 248 n n CCB HBW2 DGA sing 249 n n CDB CEB DGA sing 250 n n CDB HBH1 DGA sing 251 n n CDB HBH2 DGA sing 252 n n CEB CFB DGA sing 253 n n CEB HBF1 DGA sing 254 n n CEB HBF2 DGA sing 255 n n CFB CGB DGA sing 256 n n CFB HBN1 DGA sing 257 n n CFB HBN2 DGA sing 258 n n CGB CHB DGA sing 259 n n CGB HBS1 DGA sing 260 n n CGB HBS2 DGA sing 261 n n CHB CIB DGA sing 262 n n CHB HBV1 DGA sing 263 n n CHB HBV2 DGA sing 264 n n CIB HBG1 DGA sing 265 n n CIB HBG2 DGA sing 266 n n CIB HBG3 DGA sing 267 n n OG1 CG1 DGA sing 268 n n CG1 CG2 DGA sing 269 n n CG1 HG11 DGA sing 270 n n CG1 HG12 DGA sing 271 n n CG2 OG2 DGA sing 272 n n CG2 CG3 DGA sing 273 n n CG2 HG2 DGA sing 274 n n CG3 OXT DGA sing 275 n n CG3 HG31 DGA sing 276 n n CG3 HG32 DGA sing 277 n n OXT HXT DGA sing 278 n n # _atom_sites.entry_id 4NC3 _atom_sites.fract_transf_matrix[1][1] 0.01626 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008183 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005935 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PLM A 1 1201 501 PLM PLM . C 3 ERM A 1 1202 1 ERM ERM . D 4 CLR A 1 1203 2 CLR CLR . E 5 OLC A 1 1204 3 OLC OLC . F 5 OLC A 1 1205 5 OLC OLC . G 6 PEG A 1 1206 9 PEG PEG . H 5 OLC A 1 1207 2 OLC OLC . I 5 OLC A 1 1208 3 OLC OLC . J 7 TRS A 1 1209 1 TRS TRS . K 8 OLA A 1 1210 1 OLA OLA . L 8 OLA A 1 1211 2 OLA OLA . M 8 OLA A 1 1212 3 OLA OLA . N 9 DGA A 1 1213 1 DGA DGA . O 9 DGA A 1 1214 2 DGA DGA . P 10 HOH A 1 1301 12 HOH HOH . P 10 HOH A 2 1302 5 HOH HOH . P 10 HOH A 3 1303 7 HOH HOH . P 10 HOH A 4 1304 8 HOH HOH . P 10 HOH A 5 1305 10 HOH HOH . P 10 HOH A 6 1306 11 HOH HOH . P 10 HOH A 7 1307 12 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CA1 DGA . . . N 9 -45.394 -4.971 -13.729 1 143.81 ? CA1 DGA 1213 A 1 HETATM 2 C CA2 DGA . . . N 9 -44.033 -4.871 -13.049 1 137.39 ? CA2 DGA 1213 A 1 HETATM 3 C CA3 DGA . . . N 9 -43.737 -3.416 -12.684 1 129.7 ? CA3 DGA 1213 A 1 HETATM 4 C CA4 DGA . . . N 9 -42.275 -3.285 -12.227 1 123.2 ? CA4 DGA 1213 A 1 HETATM 5 C CA5 DGA . . . N 9 -42.225 -3.079 -10.699 1 116.84 ? CA5 DGA 1213 A 1 HETATM 6 O OA1 DGA . . . N 9 -45.527 -4.578 -14.876 1 147.06 ? OA1 DGA 1213 A 1 HETATM 7 C CB1 DGA . . . N 9 -47.013 -9.281 -11.667 1 128.9 ? CB1 DGA 1213 A 1 HETATM 8 C CB2 DGA . . . N 9 -47.05 -9.439 -10.15 1 118.25 ? CB2 DGA 1213 A 1 HETATM 9 C CB3 DGA . . . N 9 -45.638 -9.654 -9.606 1 111.77 ? CB3 DGA 1213 A 1 HETATM 10 C CB4 DGA . . . N 9 -45.6 -9.257 -8.125 1 108.72 ? CB4 DGA 1213 A 1 HETATM 11 C CB5 DGA . . . N 9 -45.541 -10.517 -7.261 1 116.13 ? CB5 DGA 1213 A 1 HETATM 12 C CB6 DGA . . . N 9 -45.512 -10.126 -5.773 1 126.15 ? CB6 DGA 1213 A 1 HETATM 13 C CB7 DGA . . . N 9 -44.399 -10.893 -5.084 1 135.12 ? CB7 DGA 1213 A 1 HETATM 14 C CB8 DGA . . . N 9 -44.606 -10.859 -3.568 1 141.95 ? CB8 DGA 1213 A 1 HETATM 15 C CB9 DGA . . . N 9 -43.321 -10.398 -2.891 1 139.99 ? CB9 DGA 1213 A 1 HETATM 16 C CAB DGA . . . N 9 -42.896 -11.426 -1.828 1 133.97 ? CAB DGA 1213 A 1 HETATM 17 C CBB DGA . . . N 9 -41.63 -10.94 -1.145 1 126.57 ? CBB DGA 1213 A 1 HETATM 18 C CCB DGA . . . N 9 -41.792 -11.052 0.377 1 121.3 ? CCB DGA 1213 A 1 HETATM 19 C CDB DGA . . . N 9 -42.765 -9.964 0.848 1 118.33 ? CDB DGA 1213 A 1 HETATM 20 O OB1 DGA . . . N 9 -47.362 -10.209 -12.379 1 130.79 ? OB1 DGA 1213 A 1 HETATM 21 O OG1 DGA . . . N 9 -46.415 -5.726 -13.129 1 145.02 ? OG1 DGA 1213 A 1 HETATM 22 C CG1 DGA . . . N 9 -47.188 -6.475 -14.04 1 146.48 ? CG1 DGA 1213 A 1 HETATM 23 C CG2 DGA . . . N 9 -47.629 -7.764 -13.386 1 143.83 ? CG2 DGA 1213 A 1 HETATM 24 O OG2 DGA . . . N 9 -46.848 -7.997 -12.229 1 138.23 ? OG2 DGA 1213 A 1 HETATM 25 C CG3 DGA . . . N 9 -49.084 -7.656 -12.998 1 143.21 ? CG3 DGA 1213 A 1 HETATM 26 O OXT DGA . . . N 9 -49.889 -7.797 -14.14 1 140.86 ? OXT DGA 1213 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 26 #