data_4NC7
#
_model_server_result.job_id            TRexWB0x903d4SopnH9myA 
_model_server_result.datetime_utc      '2024-10-10 07:21:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4nc7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":102}' 
#
_entry.id    4NC7 
#
_exptl.entry_id    4NC7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              58.693 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NICKEL (II) ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4NC7 
_cell.length_a            41.65 
_cell.length_b            110.2 
_cell.length_c            85.26 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4NC7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
PISA dimeric 2 software_defined_assembly 3 
PISA tetrameric 4 software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G 1 1 
A,C,D,F 2 1,2 
B,E,G 3 1,2 
A,B,C,D,E,F,G 4 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 42.63 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O LEU 61 A LEU 61 1_555 D NI NI . A NI 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.686 ? 
metalc ? metalc2 A O ASN 62 A ASN 62 1_555 D NI NI . A NI 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.676 ? 
metalc ? metalc3 A O ASP 64 A ASP 64 1_555 D NI NI . A NI 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.709 ? 
metalc ? metalc4 D NI NI . A NI 102 1_555 G O HOH . B HOH 226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.556 ? 
metalc ? metalc5 F O HOH . A HOH 243 1_555 E NI NI . B NI 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.575 ? 
metalc ? metalc6 B O ASN 62 B ASN 62 1_555 E NI NI . B NI 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.764 ? 
metalc ? metalc7 B O PHE 67 B PHE 67 1_555 E NI NI . B NI 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.797 ? 
#
_chem_comp.formula           'Ni 2' 
_chem_comp.formula_weight    58.693 
_chem_comp.id                NI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NICKEL (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     4NC7 
_atom_sites.fract_transf_matrix[1][1]    0.02401 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009074 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011729 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 I3C A 1 101 1 I3C I3C . 
D 3 NI A 1 102 1 NI NI . 
E 3 NI B 1 101 2 NI NI . 
F 4 HOH A 1 201 2 HOH HOH . 
F 4 HOH A 2 202 3 HOH HOH . 
F 4 HOH A 3 203 5 HOH HOH . 
F 4 HOH A 4 204 6 HOH HOH . 
F 4 HOH A 5 205 7 HOH HOH . 
F 4 HOH A 6 206 8 HOH HOH . 
F 4 HOH A 7 207 9 HOH HOH . 
F 4 HOH A 8 208 11 HOH HOH . 
F 4 HOH A 9 209 12 HOH HOH . 
F 4 HOH A 10 210 14 HOH HOH . 
F 4 HOH A 11 211 16 HOH HOH . 
F 4 HOH A 12 212 19 HOH HOH . 
F 4 HOH A 13 213 21 HOH HOH . 
F 4 HOH A 14 214 23 HOH HOH . 
F 4 HOH A 15 215 25 HOH HOH . 
F 4 HOH A 16 216 28 HOH HOH . 
F 4 HOH A 17 217 30 HOH HOH . 
F 4 HOH A 18 218 34 HOH HOH . 
F 4 HOH A 19 219 36 HOH HOH . 
F 4 HOH A 20 220 37 HOH HOH . 
F 4 HOH A 21 221 38 HOH HOH . 
F 4 HOH A 22 222 44 HOH HOH . 
F 4 HOH A 23 223 45 HOH HOH . 
F 4 HOH A 24 224 48 HOH HOH . 
F 4 HOH A 25 225 49 HOH HOH . 
F 4 HOH A 26 226 50 HOH HOH . 
F 4 HOH A 27 227 51 HOH HOH . 
F 4 HOH A 28 228 52 HOH HOH . 
F 4 HOH A 29 229 53 HOH HOH . 
F 4 HOH A 30 230 54 HOH HOH . 
F 4 HOH A 31 231 55 HOH HOH . 
F 4 HOH A 32 232 57 HOH HOH . 
F 4 HOH A 33 233 61 HOH HOH . 
F 4 HOH A 34 234 63 HOH HOH . 
F 4 HOH A 35 235 66 HOH HOH . 
F 4 HOH A 36 236 67 HOH HOH . 
F 4 HOH A 37 237 71 HOH HOH . 
F 4 HOH A 38 238 72 HOH HOH . 
F 4 HOH A 39 239 73 HOH HOH . 
F 4 HOH A 40 240 76 HOH HOH . 
F 4 HOH A 41 241 78 HOH HOH . 
F 4 HOH A 42 242 79 HOH HOH . 
F 4 HOH A 43 243 81 HOH HOH . 
G 4 HOH B 1 201 1 HOH HOH . 
G 4 HOH B 2 202 4 HOH HOH . 
G 4 HOH B 3 203 10 HOH HOH . 
G 4 HOH B 4 204 13 HOH HOH . 
G 4 HOH B 5 205 15 HOH HOH . 
G 4 HOH B 6 206 17 HOH HOH . 
G 4 HOH B 7 207 18 HOH HOH . 
G 4 HOH B 8 208 20 HOH HOH . 
G 4 HOH B 9 209 22 HOH HOH . 
G 4 HOH B 10 210 24 HOH HOH . 
G 4 HOH B 11 211 26 HOH HOH . 
G 4 HOH B 12 212 27 HOH HOH . 
G 4 HOH B 13 213 29 HOH HOH . 
G 4 HOH B 14 214 31 HOH HOH . 
G 4 HOH B 15 215 32 HOH HOH . 
G 4 HOH B 16 216 33 HOH HOH . 
G 4 HOH B 17 217 39 HOH HOH . 
G 4 HOH B 18 218 40 HOH HOH . 
G 4 HOH B 19 219 41 HOH HOH . 
G 4 HOH B 20 220 42 HOH HOH . 
G 4 HOH B 21 221 43 HOH HOH . 
G 4 HOH B 22 222 46 HOH HOH . 
G 4 HOH B 23 223 47 HOH HOH . 
G 4 HOH B 24 224 56 HOH HOH . 
G 4 HOH B 25 225 58 HOH HOH . 
G 4 HOH B 26 226 59 HOH HOH . 
G 4 HOH B 27 227 60 HOH HOH . 
G 4 HOH B 28 228 62 HOH HOH . 
G 4 HOH B 29 229 64 HOH HOH . 
G 4 HOH B 30 230 65 HOH HOH . 
G 4 HOH B 31 231 68 HOH HOH . 
G 4 HOH B 32 232 69 HOH HOH . 
G 4 HOH B 33 233 70 HOH HOH . 
G 4 HOH B 34 234 74 HOH HOH . 
G 4 HOH B 35 235 75 HOH HOH . 
G 4 HOH B 36 236 77 HOH HOH . 
G 4 HOH B 37 237 80 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NI 
_atom_site.label_atom_id         NI 
_atom_site.label_comp_id         NI 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               1.641 
_atom_site.Cartn_y               -0.914 
_atom_site.Cartn_z               6.067 
_atom_site.occupancy             0.8 
_atom_site.B_iso_or_equiv        42.26 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NI 
_atom_site.auth_comp_id          NI 
_atom_site.auth_seq_id           102 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           262 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           1 
#