data_4NCE # _model_server_result.job_id FvfupmqFi-IPf9UomyuJeQ _model_server_result.datetime_utc '2025-02-26 23:14:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4nce # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 4NCE # _exptl.entry_id 4NCE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 539.223 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "7N-METHYL-8-HYDROGUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4NCE _cell.length_a 81.44 _cell.length_b 81.44 _cell.length_c 54.56 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4NCE _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C11 H20 N5 O14 P3' _chem_comp.formula_weight 539.223 _chem_comp.id MGT _chem_comp.mon_nstd_flag n _chem_comp.name "7N-METHYL-8-HYDROGUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G MGT doub 271 n n PG O2G MGT sing 272 n n PG O3G MGT sing 273 n n PG O3B MGT sing 274 n n O2G HOG2 MGT sing 275 n n O3G HOG3 MGT sing 276 n n O3B PB MGT sing 277 n n PB O1B MGT doub 278 n n PB O2B MGT sing 279 n n PB O3A MGT sing 280 n n O2B HOB2 MGT sing 281 n n O3A PA MGT sing 282 n n PA O1A MGT doub 283 n n PA O2A MGT sing 284 n n PA O5' MGT sing 285 n n O2A HOA2 MGT sing 286 n n O5' C5' MGT sing 287 n n C5' C4' MGT sing 288 n n C5' "H5'1" MGT sing 289 n n C5' "H5'2" MGT sing 290 n n C4' O4' MGT sing 291 n n C4' C3' MGT sing 292 n n C4' H4' MGT sing 293 n n O4' C1' MGT sing 294 n n C3' O3' MGT sing 295 n n C3' C2' MGT sing 296 n n C3' H3' MGT sing 297 n n O3' HO3' MGT sing 298 n n C2' O2' MGT sing 299 n n C2' C1' MGT sing 300 n n C2' H2' MGT sing 301 n n O2' HO2' MGT sing 302 n n C1' N9 MGT sing 303 n n C1' H1' MGT sing 304 n n N9 C8 MGT sing 305 n n N9 C4 MGT sing 306 n n C8 N7 MGT sing 307 n n C8 H81 MGT sing 308 n n C8 H82 MGT sing 309 n n N7 CM7 MGT sing 310 n n N7 C5 MGT sing 311 n n CM7 HM71 MGT sing 312 n n CM7 HM72 MGT sing 313 n n CM7 HM73 MGT sing 314 n n C5 C6 MGT sing 315 n n C5 C4 MGT doub 316 n n C6 O6 MGT doub 317 n n C6 N1 MGT sing 318 n n N1 C2 MGT sing 319 n n N1 HN1 MGT sing 320 n n C2 N2 MGT sing 321 n n C2 N3 MGT doub 322 n n N2 HN21 MGT sing 323 n n N2 HN22 MGT sing 324 n n N3 C4 MGT sing 325 n n # _atom_sites.entry_id 4NCE _atom_sites.fract_transf_matrix[1][1] 0.012279 _atom_sites.fract_transf_matrix[1][2] 0.007089 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014179 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018328 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MGT A 1 501 1 MGT 456 . C 3 11H A 1 502 1 11H 636 . D 3 11H A 1 503 1 11H 636 . E 4 HOH A 1 601 1 HOH HOH . E 4 HOH A 2 602 2 HOH HOH . E 4 HOH A 3 603 3 HOH HOH . E 4 HOH A 4 604 4 HOH HOH . E 4 HOH A 5 605 5 HOH HOH . E 4 HOH A 6 606 6 HOH HOH . E 4 HOH A 7 607 7 HOH HOH . E 4 HOH A 8 608 8 HOH HOH . E 4 HOH A 9 609 9 HOH HOH . E 4 HOH A 10 610 10 HOH HOH . E 4 HOH A 11 611 11 HOH HOH . E 4 HOH A 12 612 12 HOH HOH . E 4 HOH A 13 613 13 HOH HOH . E 4 HOH A 14 614 14 HOH HOH . E 4 HOH A 15 615 15 HOH HOH . E 4 HOH A 16 616 16 HOH HOH . E 4 HOH A 17 617 17 HOH HOH . E 4 HOH A 18 618 18 HOH HOH . E 4 HOH A 19 619 19 HOH HOH . E 4 HOH A 20 620 20 HOH HOH . E 4 HOH A 21 621 21 HOH HOH . E 4 HOH A 22 622 22 HOH HOH . E 4 HOH A 23 623 23 HOH HOH . E 4 HOH A 24 624 24 HOH HOH . E 4 HOH A 25 625 25 HOH HOH . E 4 HOH A 26 626 26 HOH HOH . E 4 HOH A 27 627 27 HOH HOH . E 4 HOH A 28 628 28 HOH HOH . E 4 HOH A 29 629 29 HOH HOH . E 4 HOH A 30 630 30 HOH HOH . E 4 HOH A 31 631 31 HOH HOH . E 4 HOH A 32 632 32 HOH HOH . E 4 HOH A 33 633 33 HOH HOH . E 4 HOH A 34 634 34 HOH HOH . E 4 HOH A 35 635 35 HOH HOH . E 4 HOH A 36 636 36 HOH HOH . E 4 HOH A 37 637 37 HOH HOH . E 4 HOH A 38 638 38 HOH HOH . E 4 HOH A 39 639 39 HOH HOH . E 4 HOH A 40 640 40 HOH HOH . E 4 HOH A 41 641 41 HOH HOH . E 4 HOH A 42 642 42 HOH HOH . E 4 HOH A 43 643 43 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG MGT . . . B 2 -48.855 -12.56 6.505 1 51.1 ? PG MGT 501 A 1 HETATM 2 O O1G MGT . . . B 2 -48.265 -12.467 5.146 1 49.61 ? O1G MGT 501 A 1 HETATM 3 O O2G MGT . . . B 2 -47.724 -13.003 7.572 1 51.82 ? O2G MGT 501 A 1 HETATM 4 O O3G MGT . . . B 2 -50.094 -13.599 6.553 1 50.92 ? O3G MGT 501 A 1 HETATM 5 O O3B MGT . . . B 2 -49.436 -11.12 6.925 1 49.95 ? O3B MGT 501 A 1 HETATM 6 P PB MGT . . . B 2 -49.653 -9.749 6.123 1 48 ? PB MGT 501 A 1 HETATM 7 O O1B MGT . . . B 2 -50.425 -8.848 7.015 1 48.66 ? O1B MGT 501 A 1 HETATM 8 O O2B MGT . . . B 2 -50.484 -9.993 4.759 1 48.33 ? O2B MGT 501 A 1 HETATM 9 O O3A MGT . . . B 2 -48.201 -9.135 5.777 1 47 ? O3A MGT 501 A 1 HETATM 10 P PA MGT . . . B 2 -47.371 -7.913 6.424 1 46.15 ? PA MGT 501 A 1 HETATM 11 O O1A MGT . . . B 2 -46.452 -7.38 5.39 1 46.31 ? O1A MGT 501 A 1 HETATM 12 O O2A MGT . . . B 2 -46.569 -8.349 7.749 1 46.03 ? O2A MGT 501 A 1 HETATM 13 O O5' MGT . . . B 2 -48.428 -6.828 6.967 1 43.89 ? O5' MGT 501 A 1 HETATM 14 C C5' MGT . . . B 2 -48.252 -5.417 6.981 1 38.5 ? C5' MGT 501 A 1 HETATM 15 C C4' MGT . . . B 2 -49.367 -4.734 6.181 1 34.16 ? C4' MGT 501 A 1 HETATM 16 O O4' MGT . . . B 2 -48.729 -4.112 5.076 1 31.58 ? O4' MGT 501 A 1 HETATM 17 C C3' MGT . . . B 2 -50.447 -5.693 5.617 1 32.11 ? C3' MGT 501 A 1 HETATM 18 O O3' MGT . . . B 2 -51.737 -5.12 5.777 1 32.16 ? O3' MGT 501 A 1 HETATM 19 C C2' MGT . . . B 2 -50.107 -5.767 4.102 1 31.51 ? C2' MGT 501 A 1 HETATM 20 O O2' MGT . . . B 2 -51.257 -5.91 3.256 1 30.54 ? O2' MGT 501 A 1 HETATM 21 C C1' MGT . . . B 2 -49.469 -4.376 3.886 1 29.67 ? C1' MGT 501 A 1 HETATM 22 N N9 MGT . . . B 2 -48.536 -4.419 2.771 1 27 ? N9 MGT 501 A 1 HETATM 23 C C8 MGT . . . B 2 -47.216 -5.055 2.763 1 25.06 ? C8 MGT 501 A 1 HETATM 24 N N7 MGT . . . B 2 -46.619 -4.694 1.484 1 24.86 ? N7 MGT 501 A 1 HETATM 25 C CM7 MGT . . . B 2 -45.251 -5.037 1.103 1 23.97 ? CM7 MGT 501 A 1 HETATM 26 C C5 MGT . . . B 2 -47.616 -3.981 0.749 1 25.78 ? C5 MGT 501 A 1 HETATM 27 C C6 MGT . . . B 2 -47.665 -3.424 -0.555 1 25.91 ? C6 MGT 501 A 1 HETATM 28 O O6 MGT . . . B 2 -46.709 -3.501 -1.321 1 26.64 ? O6 MGT 501 A 1 HETATM 29 N N1 MGT . . . B 2 -48.799 -2.793 -0.963 1 25.14 ? N1 MGT 501 A 1 HETATM 30 C C2 MGT . . . B 2 -49.874 -2.702 -0.133 1 25.15 ? C2 MGT 501 A 1 HETATM 31 N N2 MGT . . . B 2 -51.006 -2.073 -0.559 1 24.43 ? N2 MGT 501 A 1 HETATM 32 N N3 MGT . . . B 2 -49.846 -3.203 1.078 1 25.55 ? N3 MGT 501 A 1 HETATM 33 C C4 MGT . . . B 2 -48.751 -3.838 1.543 1 26.29 ? C4 MGT 501 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 222 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 33 #