data_4NCL
#
_model_server_result.job_id            07Y43owttr-7IHRvZTp1Xw 
_model_server_result.datetime_utc      '2024-11-27 03:09:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4ncl 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1002}' 
#
_entry.id    4NCL 
#
_exptl.entry_id    4NCL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              24.305 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MAGNESIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4NCL 
_cell.length_a            66.9 
_cell.length_b            72.96 
_cell.length_c            199.23 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4NCL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G 1 1 
B,E,F,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 14 A CYS 527 1_555 A SG CYS 99 A CYS 612 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
disulf ? disulf2 B SG CYS 14 B CYS 527 1_555 B SG CYS 99 B CYS 612 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
metalc ? metalc1 A OG1 THR 24 A THR 537 1_555 D MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.701 ? 
metalc ? metalc2 C O2B GDP . A GDP 1001 1_555 D MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.72 ? 
metalc ? metalc3 D MG MG . A MG 1002 1_555 G O HOH . A HOH 1192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? 
metalc ? metalc4 E O3B GDP . B GDP 1001 1_555 F MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.863 ? 
metalc ? metalc5 E O2B GDP . B GDP 1001 1_555 F MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.939 ? 
metalc ? metalc6 F MG MG . B MG 1002 1_555 H O HOH . B HOH 1154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? 
metalc ? metalc7 F MG MG . B MG 1002 1_555 H O HOH . B HOH 1167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? 
#
_chem_comp.formula           'Mg 2' 
_chem_comp.formula_weight    24.305 
_chem_comp.id                MG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MAGNESIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     4NCL 
_atom_sites.fract_transf_matrix[1][1]    0.014948 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013706 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005019 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GDP A 1 1001 100 GDP GDP . 
D 3 MG A 1 1002 980 MG MG . 
E 2 GDP B 1 1001 100 GDP GDP . 
F 3 MG B 1 1002 980 MG MG . 
G 4 HOH A 1 1101 1 HOH HOH . 
G 4 HOH A 2 1102 3 HOH HOH . 
G 4 HOH A 3 1103 4 HOH HOH . 
G 4 HOH A 4 1104 5 HOH HOH . 
G 4 HOH A 5 1105 6 HOH HOH . 
G 4 HOH A 6 1106 7 HOH HOH . 
G 4 HOH A 7 1107 8 HOH HOH . 
G 4 HOH A 8 1108 9 HOH HOH . 
G 4 HOH A 9 1109 10 HOH HOH . 
G 4 HOH A 10 1110 14 HOH HOH . 
G 4 HOH A 11 1111 19 HOH HOH . 
G 4 HOH A 12 1112 20 HOH HOH . 
G 4 HOH A 13 1113 22 HOH HOH . 
G 4 HOH A 14 1114 23 HOH HOH . 
G 4 HOH A 15 1115 24 HOH HOH . 
G 4 HOH A 16 1116 25 HOH HOH . 
G 4 HOH A 17 1117 36 HOH HOH . 
G 4 HOH A 18 1118 37 HOH HOH . 
G 4 HOH A 19 1119 41 HOH HOH . 
G 4 HOH A 20 1120 42 HOH HOH . 
G 4 HOH A 21 1121 46 HOH HOH . 
G 4 HOH A 22 1122 48 HOH HOH . 
G 4 HOH A 23 1123 49 HOH HOH . 
G 4 HOH A 24 1124 50 HOH HOH . 
G 4 HOH A 25 1125 53 HOH HOH . 
G 4 HOH A 26 1126 57 HOH HOH . 
G 4 HOH A 27 1127 62 HOH HOH . 
G 4 HOH A 28 1128 63 HOH HOH . 
G 4 HOH A 29 1129 64 HOH HOH . 
G 4 HOH A 30 1130 65 HOH HOH . 
G 4 HOH A 31 1131 68 HOH HOH . 
G 4 HOH A 32 1132 71 HOH HOH . 
G 4 HOH A 33 1133 72 HOH HOH . 
G 4 HOH A 34 1134 76 HOH HOH . 
G 4 HOH A 35 1135 79 HOH HOH . 
G 4 HOH A 36 1136 82 HOH HOH . 
G 4 HOH A 37 1137 83 HOH HOH . 
G 4 HOH A 38 1138 84 HOH HOH . 
G 4 HOH A 39 1139 85 HOH HOH . 
G 4 HOH A 40 1140 88 HOH HOH . 
G 4 HOH A 41 1141 92 HOH HOH . 
G 4 HOH A 42 1142 95 HOH HOH . 
G 4 HOH A 43 1143 98 HOH HOH . 
G 4 HOH A 44 1144 99 HOH HOH . 
G 4 HOH A 45 1145 100 HOH HOH . 
G 4 HOH A 46 1146 106 HOH HOH . 
G 4 HOH A 47 1147 108 HOH HOH . 
G 4 HOH A 48 1148 110 HOH HOH . 
G 4 HOH A 49 1149 111 HOH HOH . 
G 4 HOH A 50 1150 112 HOH HOH . 
G 4 HOH A 51 1151 114 HOH HOH . 
G 4 HOH A 52 1152 115 HOH HOH . 
G 4 HOH A 53 1153 116 HOH HOH . 
G 4 HOH A 54 1154 117 HOH HOH . 
G 4 HOH A 55 1155 118 HOH HOH . 
G 4 HOH A 56 1156 120 HOH HOH . 
G 4 HOH A 57 1157 126 HOH HOH . 
G 4 HOH A 58 1158 130 HOH HOH . 
G 4 HOH A 59 1159 131 HOH HOH . 
G 4 HOH A 60 1160 133 HOH HOH . 
G 4 HOH A 61 1161 134 HOH HOH . 
G 4 HOH A 62 1162 135 HOH HOH . 
G 4 HOH A 63 1163 136 HOH HOH . 
G 4 HOH A 64 1164 137 HOH HOH . 
G 4 HOH A 65 1165 138 HOH HOH . 
G 4 HOH A 66 1166 139 HOH HOH . 
G 4 HOH A 67 1167 142 HOH HOH . 
G 4 HOH A 68 1168 145 HOH HOH . 
G 4 HOH A 69 1169 146 HOH HOH . 
G 4 HOH A 70 1170 149 HOH HOH . 
G 4 HOH A 71 1171 151 HOH HOH . 
G 4 HOH A 72 1172 153 HOH HOH . 
G 4 HOH A 73 1173 155 HOH HOH . 
G 4 HOH A 74 1174 157 HOH HOH . 
G 4 HOH A 75 1175 158 HOH HOH . 
G 4 HOH A 76 1176 166 HOH HOH . 
G 4 HOH A 77 1177 167 HOH HOH . 
G 4 HOH A 78 1178 168 HOH HOH . 
G 4 HOH A 79 1179 170 HOH HOH . 
G 4 HOH A 80 1180 176 HOH HOH . 
G 4 HOH A 81 1181 178 HOH HOH . 
G 4 HOH A 82 1182 179 HOH HOH . 
G 4 HOH A 83 1183 180 HOH HOH . 
G 4 HOH A 84 1184 183 HOH HOH . 
G 4 HOH A 85 1185 191 HOH HOH . 
G 4 HOH A 86 1186 195 HOH HOH . 
G 4 HOH A 87 1187 197 HOH HOH . 
G 4 HOH A 88 1188 198 HOH HOH . 
G 4 HOH A 89 1189 206 HOH HOH . 
G 4 HOH A 90 1190 212 HOH HOH . 
G 4 HOH A 91 1191 213 HOH HOH . 
G 4 HOH A 92 1192 214 HOH HOH . 
H 4 HOH B 1 1101 2 HOH HOH . 
H 4 HOH B 2 1102 11 HOH HOH . 
H 4 HOH B 3 1103 12 HOH HOH . 
H 4 HOH B 4 1104 13 HOH HOH . 
H 4 HOH B 5 1105 15 HOH HOH . 
H 4 HOH B 6 1106 16 HOH HOH . 
H 4 HOH B 7 1107 17 HOH HOH . 
H 4 HOH B 8 1108 18 HOH HOH . 
H 4 HOH B 9 1109 21 HOH HOH . 
H 4 HOH B 10 1110 26 HOH HOH . 
H 4 HOH B 11 1111 27 HOH HOH . 
H 4 HOH B 12 1112 28 HOH HOH . 
H 4 HOH B 13 1113 29 HOH HOH . 
H 4 HOH B 14 1114 30 HOH HOH . 
H 4 HOH B 15 1115 31 HOH HOH . 
H 4 HOH B 16 1116 32 HOH HOH . 
H 4 HOH B 17 1117 33 HOH HOH . 
H 4 HOH B 18 1118 34 HOH HOH . 
H 4 HOH B 19 1119 35 HOH HOH . 
H 4 HOH B 20 1120 38 HOH HOH . 
H 4 HOH B 21 1121 39 HOH HOH . 
H 4 HOH B 22 1122 40 HOH HOH . 
H 4 HOH B 23 1123 43 HOH HOH . 
H 4 HOH B 24 1124 44 HOH HOH . 
H 4 HOH B 25 1125 45 HOH HOH . 
H 4 HOH B 26 1126 47 HOH HOH . 
H 4 HOH B 27 1127 51 HOH HOH . 
H 4 HOH B 28 1128 52 HOH HOH . 
H 4 HOH B 29 1129 54 HOH HOH . 
H 4 HOH B 30 1130 55 HOH HOH . 
H 4 HOH B 31 1131 56 HOH HOH . 
H 4 HOH B 32 1132 58 HOH HOH . 
H 4 HOH B 33 1133 59 HOH HOH . 
H 4 HOH B 34 1134 60 HOH HOH . 
H 4 HOH B 35 1135 61 HOH HOH . 
H 4 HOH B 36 1136 66 HOH HOH . 
H 4 HOH B 37 1137 67 HOH HOH . 
H 4 HOH B 38 1138 69 HOH HOH . 
H 4 HOH B 39 1139 70 HOH HOH . 
H 4 HOH B 40 1140 73 HOH HOH . 
H 4 HOH B 41 1141 74 HOH HOH . 
H 4 HOH B 42 1142 75 HOH HOH . 
H 4 HOH B 43 1143 77 HOH HOH . 
H 4 HOH B 44 1144 78 HOH HOH . 
H 4 HOH B 45 1145 80 HOH HOH . 
H 4 HOH B 46 1146 81 HOH HOH . 
H 4 HOH B 47 1147 86 HOH HOH . 
H 4 HOH B 48 1148 87 HOH HOH . 
H 4 HOH B 49 1149 89 HOH HOH . 
H 4 HOH B 50 1150 90 HOH HOH . 
H 4 HOH B 51 1151 91 HOH HOH . 
H 4 HOH B 52 1152 93 HOH HOH . 
H 4 HOH B 53 1153 94 HOH HOH . 
H 4 HOH B 54 1154 96 HOH HOH . 
H 4 HOH B 55 1155 97 HOH HOH . 
H 4 HOH B 56 1156 101 HOH HOH . 
H 4 HOH B 57 1157 102 HOH HOH . 
H 4 HOH B 58 1158 103 HOH HOH . 
H 4 HOH B 59 1159 104 HOH HOH . 
H 4 HOH B 60 1160 105 HOH HOH . 
H 4 HOH B 61 1161 107 HOH HOH . 
H 4 HOH B 62 1162 109 HOH HOH . 
H 4 HOH B 63 1163 113 HOH HOH . 
H 4 HOH B 64 1164 121 HOH HOH . 
H 4 HOH B 65 1165 122 HOH HOH . 
H 4 HOH B 66 1166 123 HOH HOH . 
H 4 HOH B 67 1167 125 HOH HOH . 
H 4 HOH B 68 1168 128 HOH HOH . 
H 4 HOH B 69 1169 132 HOH HOH . 
H 4 HOH B 70 1170 140 HOH HOH . 
H 4 HOH B 71 1171 141 HOH HOH . 
H 4 HOH B 72 1172 143 HOH HOH . 
H 4 HOH B 73 1173 144 HOH HOH . 
H 4 HOH B 74 1174 147 HOH HOH . 
H 4 HOH B 75 1175 148 HOH HOH . 
H 4 HOH B 76 1176 150 HOH HOH . 
H 4 HOH B 77 1177 152 HOH HOH . 
H 4 HOH B 78 1178 154 HOH HOH . 
H 4 HOH B 79 1179 159 HOH HOH . 
H 4 HOH B 80 1180 160 HOH HOH . 
H 4 HOH B 81 1181 161 HOH HOH . 
H 4 HOH B 82 1182 162 HOH HOH . 
H 4 HOH B 83 1183 163 HOH HOH . 
H 4 HOH B 84 1184 164 HOH HOH . 
H 4 HOH B 85 1185 165 HOH HOH . 
H 4 HOH B 86 1186 172 HOH HOH . 
H 4 HOH B 87 1187 173 HOH HOH . 
H 4 HOH B 88 1188 177 HOH HOH . 
H 4 HOH B 89 1189 184 HOH HOH . 
H 4 HOH B 90 1190 185 HOH HOH . 
H 4 HOH B 91 1191 189 HOH HOH . 
H 4 HOH B 92 1192 192 HOH HOH . 
H 4 HOH B 93 1193 201 HOH HOH . 
H 4 HOH B 94 1194 203 HOH HOH . 
H 4 HOH B 95 1195 205 HOH HOH . 
H 4 HOH B 96 1196 207 HOH HOH . 
H 4 HOH B 97 1197 208 HOH HOH . 
H 4 HOH B 98 1198 209 HOH HOH . 
H 4 HOH B 99 1199 210 HOH HOH . 
H 4 HOH B 100 1200 211 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MG 
_atom_site.label_atom_id         MG 
_atom_site.label_comp_id         MG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               -11.551 
_atom_site.Cartn_y               -13.381 
_atom_site.Cartn_z               42.066 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        75.45 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MG 
_atom_site.auth_comp_id          MG 
_atom_site.auth_seq_id           1002 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           264 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#