data_4NEB
#
_model_server_result.job_id            HuOe5TcOF0cSyYUh46SMIw 
_model_server_result.datetime_utc      '2024-11-23 12:30:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4neb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":201}' 
#
_entry.id    4NEB 
#
_exptl.entry_id    4NEB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              54.938 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MANGANESE (II) ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4NEB 
_cell.length_a            79.186 
_cell.length_b            79.186 
_cell.length_c            37.715 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4NEB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? 
disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf4 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
metalc ? metalc1 A OE1 GLU 35 A GLU 35 1_555 C MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? 
metalc ? metalc2 A OD2 ASP 52 A ASP 52 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? 
metalc ? metalc3 B MN MN . A MN 201 1_555 E O HOH . A HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.949 ? 
metalc ? metalc4 B MN MN . A MN 201 1_555 E O HOH . A HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? 
metalc ? metalc5 B MN MN . A MN 201 1_555 E O HOH . A HOH 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.976 ? 
metalc ? metalc6 B MN MN . A MN 201 1_555 E O HOH . A HOH 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.971 ? 
metalc ? metalc7 C MN MN . A MN 202 1_555 E O HOH . A HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.969 ? 
metalc ? metalc8 C MN MN . A MN 202 1_555 E O HOH . A HOH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.975 ? 
metalc ? metalc9 C MN MN . A MN 202 1_555 E O HOH . A HOH 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.96 ? 
#
_chem_comp.formula           'Mn 2' 
_chem_comp.formula_weight    54.938 
_chem_comp.id                MN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MANGANESE (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     4NEB 
_atom_sites.fract_transf_matrix[1][1]    0.012628 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012628 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.026515 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MN A 1 201 201 MN MN . 
C 2 MN A 1 202 202 MN MN . 
D 3 CL A 1 203 203 CL CL . 
E 4 HOH A 1 301 301 HOH HOH . 
E 4 HOH A 2 302 302 HOH HOH . 
E 4 HOH A 3 303 303 HOH HOH . 
E 4 HOH A 4 304 304 HOH HOH . 
E 4 HOH A 5 305 305 HOH HOH . 
E 4 HOH A 6 306 306 HOH HOH . 
E 4 HOH A 7 307 309 HOH HOH . 
E 4 HOH A 8 308 310 HOH HOH . 
E 4 HOH A 9 309 312 HOH HOH . 
E 4 HOH A 10 310 314 HOH HOH . 
E 4 HOH A 11 311 315 HOH HOH . 
E 4 HOH A 12 312 316 HOH HOH . 
E 4 HOH A 13 313 317 HOH HOH . 
E 4 HOH A 14 314 318 HOH HOH . 
E 4 HOH A 15 315 319 HOH HOH . 
E 4 HOH A 16 316 320 HOH HOH . 
E 4 HOH A 17 317 321 HOH HOH . 
E 4 HOH A 18 318 322 HOH HOH . 
E 4 HOH A 19 319 323 HOH HOH . 
E 4 HOH A 20 320 324 HOH HOH . 
E 4 HOH A 21 321 325 HOH HOH . 
E 4 HOH A 22 322 326 HOH HOH . 
E 4 HOH A 23 323 327 HOH HOH . 
E 4 HOH A 24 324 328 HOH HOH . 
E 4 HOH A 25 325 329 HOH HOH . 
E 4 HOH A 26 326 330 HOH HOH . 
E 4 HOH A 27 327 333 HOH HOH . 
E 4 HOH A 28 328 334 HOH HOH . 
E 4 HOH A 29 329 335 HOH HOH . 
E 4 HOH A 30 330 336 HOH HOH . 
E 4 HOH A 31 331 337 HOH HOH . 
E 4 HOH A 32 332 338 HOH HOH . 
E 4 HOH A 33 333 339 HOH HOH . 
E 4 HOH A 34 334 340 HOH HOH . 
E 4 HOH A 35 335 341 HOH HOH . 
E 4 HOH A 36 336 342 HOH HOH . 
E 4 HOH A 37 337 343 HOH HOH . 
E 4 HOH A 38 338 344 HOH HOH . 
E 4 HOH A 39 339 345 HOH HOH . 
E 4 HOH A 40 340 347 HOH HOH . 
E 4 HOH A 41 341 349 HOH HOH . 
E 4 HOH A 42 342 350 HOH HOH . 
E 4 HOH A 43 343 351 HOH HOH . 
E 4 HOH A 44 344 353 HOH HOH . 
E 4 HOH A 45 345 354 HOH HOH . 
E 4 HOH A 46 346 355 HOH HOH . 
E 4 HOH A 47 347 357 HOH HOH . 
E 4 HOH A 48 348 360 HOH HOH . 
E 4 HOH A 49 349 362 HOH HOH . 
E 4 HOH A 50 350 364 HOH HOH . 
E 4 HOH A 51 351 366 HOH HOH . 
E 4 HOH A 52 352 368 HOH HOH . 
E 4 HOH A 53 353 369 HOH HOH . 
E 4 HOH A 54 354 370 HOH HOH . 
E 4 HOH A 55 355 372 HOH HOH . 
E 4 HOH A 56 356 374 HOH HOH . 
E 4 HOH A 57 357 375 HOH HOH . 
E 4 HOH A 58 358 381 HOH HOH . 
E 4 HOH A 59 359 382 HOH HOH . 
E 4 HOH A 60 360 384 HOH HOH . 
E 4 HOH A 61 361 387 HOH HOH . 
E 4 HOH A 62 362 389 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MN 
_atom_site.label_atom_id         MN 
_atom_site.label_comp_id         MN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         B 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               -8.1 
_atom_site.Cartn_y               55.185 
_atom_site.Cartn_z               3.111 
_atom_site.occupancy             0.31 
_atom_site.B_iso_or_equiv        23.79 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MN 
_atom_site.auth_comp_id          MN 
_atom_site.auth_seq_id           201 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              26 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           264 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           1 
#