data_4NEB # _model_server_result.job_id pgYVFiCE8u1-Z5LTWMNtHA _model_server_result.datetime_utc '2024-11-08 03:57:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4neb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 4NEB # _exptl.entry_id 4NEB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4NEB _cell.length_a 79.186 _cell.length_b 79.186 _cell.length_c 37.715 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4NEB _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf4 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc1 A OE1 GLU 35 A GLU 35 1_555 C MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc2 A OD2 ASP 52 A ASP 52 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? metalc ? metalc3 B MN MN . A MN 201 1_555 E O HOH . A HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.949 ? metalc ? metalc4 B MN MN . A MN 201 1_555 E O HOH . A HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? metalc ? metalc5 B MN MN . A MN 201 1_555 E O HOH . A HOH 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.976 ? metalc ? metalc6 B MN MN . A MN 201 1_555 E O HOH . A HOH 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.971 ? metalc ? metalc7 C MN MN . A MN 202 1_555 E O HOH . A HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.969 ? metalc ? metalc8 C MN MN . A MN 202 1_555 E O HOH . A HOH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.975 ? metalc ? metalc9 C MN MN . A MN 202 1_555 E O HOH . A HOH 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.96 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4NEB _atom_sites.fract_transf_matrix[1][1] 0.012628 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012628 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026515 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 201 201 MN MN . C 2 MN A 1 202 202 MN MN . D 3 CL A 1 203 203 CL CL . E 4 HOH A 1 301 301 HOH HOH . E 4 HOH A 2 302 302 HOH HOH . E 4 HOH A 3 303 303 HOH HOH . E 4 HOH A 4 304 304 HOH HOH . E 4 HOH A 5 305 305 HOH HOH . E 4 HOH A 6 306 306 HOH HOH . E 4 HOH A 7 307 309 HOH HOH . E 4 HOH A 8 308 310 HOH HOH . E 4 HOH A 9 309 312 HOH HOH . E 4 HOH A 10 310 314 HOH HOH . E 4 HOH A 11 311 315 HOH HOH . E 4 HOH A 12 312 316 HOH HOH . E 4 HOH A 13 313 317 HOH HOH . E 4 HOH A 14 314 318 HOH HOH . E 4 HOH A 15 315 319 HOH HOH . E 4 HOH A 16 316 320 HOH HOH . E 4 HOH A 17 317 321 HOH HOH . E 4 HOH A 18 318 322 HOH HOH . E 4 HOH A 19 319 323 HOH HOH . E 4 HOH A 20 320 324 HOH HOH . E 4 HOH A 21 321 325 HOH HOH . E 4 HOH A 22 322 326 HOH HOH . E 4 HOH A 23 323 327 HOH HOH . E 4 HOH A 24 324 328 HOH HOH . E 4 HOH A 25 325 329 HOH HOH . E 4 HOH A 26 326 330 HOH HOH . E 4 HOH A 27 327 333 HOH HOH . E 4 HOH A 28 328 334 HOH HOH . E 4 HOH A 29 329 335 HOH HOH . E 4 HOH A 30 330 336 HOH HOH . E 4 HOH A 31 331 337 HOH HOH . E 4 HOH A 32 332 338 HOH HOH . E 4 HOH A 33 333 339 HOH HOH . E 4 HOH A 34 334 340 HOH HOH . E 4 HOH A 35 335 341 HOH HOH . E 4 HOH A 36 336 342 HOH HOH . E 4 HOH A 37 337 343 HOH HOH . E 4 HOH A 38 338 344 HOH HOH . E 4 HOH A 39 339 345 HOH HOH . E 4 HOH A 40 340 347 HOH HOH . E 4 HOH A 41 341 349 HOH HOH . E 4 HOH A 42 342 350 HOH HOH . E 4 HOH A 43 343 351 HOH HOH . E 4 HOH A 44 344 353 HOH HOH . E 4 HOH A 45 345 354 HOH HOH . E 4 HOH A 46 346 355 HOH HOH . E 4 HOH A 47 347 357 HOH HOH . E 4 HOH A 48 348 360 HOH HOH . E 4 HOH A 49 349 362 HOH HOH . E 4 HOH A 50 350 364 HOH HOH . E 4 HOH A 51 351 366 HOH HOH . E 4 HOH A 52 352 368 HOH HOH . E 4 HOH A 53 353 369 HOH HOH . E 4 HOH A 54 354 370 HOH HOH . E 4 HOH A 55 355 372 HOH HOH . E 4 HOH A 56 356 374 HOH HOH . E 4 HOH A 57 357 375 HOH HOH . E 4 HOH A 58 358 381 HOH HOH . E 4 HOH A 59 359 382 HOH HOH . E 4 HOH A 60 360 384 HOH HOH . E 4 HOH A 61 361 387 HOH HOH . E 4 HOH A 62 362 389 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x -7.931 _atom_site.Cartn_y 54.755 _atom_site.Cartn_z -0.042 _atom_site.occupancy 0.49 _atom_site.B_iso_or_equiv 29.68 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 202 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #