data_4NED # _model_server_result.job_id UXpyT9CBADPwOGTIC2-TSA _model_server_result.datetime_utc '2024-11-24 12:43:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ned # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":710}' # _entry.id 4NED # _exptl.entry_id 4NED _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.32 _cell.angle_gamma 90 _cell.entry_id 4NED _cell.length_a 62.47 _cell.length_b 50.07 _cell.length_c 65.49 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4NED _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 J N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 8 NAG 2 n B NAG 2 B 2 NAG A 9 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 348 1_555 A SG CYS 39 A CYS 380 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 A SG CYS 17 A CYS 358 1_555 A SG CYS 30 A CYS 371 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? disulf ? disulf3 A SG CYS 64 A CYS 405 1_555 A SG CYS 343 A CYS 684 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf4 A SG CYS 84 A CYS 425 1_555 A SG CYS 306 A CYS 647 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf5 A SG CYS 116 A CYS 457 1_555 A SG CYS 191 A CYS 532 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? disulf ? disulf6 A SG CYS 140 A CYS 481 1_555 A SG CYS 334 A CYS 675 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf7 A SG CYS 150 A CYS 491 1_555 A SG CYS 164 A CYS 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? disulf ? disulf8 A SG CYS 161 A CYS 502 1_555 A SG CYS 174 A CYS 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? disulf ? disulf9 A SG CYS 232 A CYS 573 1_555 A SG CYS 246 A CYS 587 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? disulf ? disulf10 A SG CYS 284 A CYS 625 1_555 A SG CYS 289 A CYS 630 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? covale ? covale1 A ND2 ASN 135 A ASN 476 1_555 H C1 NAG . A NAG 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale2 A ND2 ASN 204 A ASN 545 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale3 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? metalc ? metalc1 A OD1 ASP 54 A ASP 395 1_555 D FE FE . A FE 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.979 ? metalc ? metalc2 A OH TYR 92 A TYR 433 1_555 D FE FE . A FE 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? metalc ? metalc3 A OH TYR 185 A TYR 526 1_555 D FE FE . A FE 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.795 ? metalc ? metalc4 A NE2 HIS 247 A HIS 588 1_555 J ZN ZN . A ZN 710 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? metalc ? metalc5 A NE2 HIS 254 A HIS 595 1_555 D FE FE . A FE 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? metalc ? metalc6 A OE2 GLU 318 A GLU 659 1_555 C ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? metalc ? metalc7 A OE1 GLU 318 A GLU 659 1_555 C ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? metalc ? metalc8 D FE FE . A FE 702 1_555 E O1 CO3 . A CO3 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? metalc ? metalc9 D FE FE . A FE 702 1_555 E O2 CO3 . A CO3 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4NED _atom_sites.fract_transf_matrix[1][1] 0.016008 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004992 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019972 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015995 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN A 1 701 81 ZN ZN . D 4 FE A 1 702 84 FE FE . E 5 CO3 A 1 703 85 CO3 CO3 . F 6 SO4 A 1 704 692 SO4 SO4 . G 7 NAG A 1 705 1 NAG NAG . H 7 NAG A 1 706 3 NAG NAG . I 8 PFN A 1 709 1373 PFN PFN . J 3 ZN A 1 710 1 ZN ZN . K 9 HOH A 1 801 1 HOH HOH . K 9 HOH A 2 802 2 HOH HOH . K 9 HOH A 3 803 3 HOH HOH . K 9 HOH A 4 804 4 HOH HOH . K 9 HOH A 5 805 5 HOH HOH . K 9 HOH A 6 806 6 HOH HOH . K 9 HOH A 7 807 7 HOH HOH . K 9 HOH A 8 808 8 HOH HOH . K 9 HOH A 9 809 9 HOH HOH . K 9 HOH A 10 810 10 HOH HOH . K 9 HOH A 11 811 11 HOH HOH . K 9 HOH A 12 812 12 HOH HOH . K 9 HOH A 13 813 13 HOH HOH . K 9 HOH A 14 814 14 HOH HOH . K 9 HOH A 15 815 15 HOH HOH . K 9 HOH A 16 816 16 HOH HOH . K 9 HOH A 17 817 17 HOH HOH . K 9 HOH A 18 818 18 HOH HOH . K 9 HOH A 19 819 19 HOH HOH . K 9 HOH A 20 820 20 HOH HOH . K 9 HOH A 21 821 21 HOH HOH . K 9 HOH A 22 822 22 HOH HOH . K 9 HOH A 23 823 23 HOH HOH . K 9 HOH A 24 824 24 HOH HOH . K 9 HOH A 25 825 25 HOH HOH . K 9 HOH A 26 826 26 HOH HOH . K 9 HOH A 27 827 27 HOH HOH . K 9 HOH A 28 828 28 HOH HOH . K 9 HOH A 29 829 29 HOH HOH . K 9 HOH A 30 830 30 HOH HOH . K 9 HOH A 31 831 31 HOH HOH . K 9 HOH A 32 832 32 HOH HOH . K 9 HOH A 33 833 33 HOH HOH . K 9 HOH A 34 834 34 HOH HOH . K 9 HOH A 35 835 35 HOH HOH . K 9 HOH A 36 836 36 HOH HOH . K 9 HOH A 37 837 38 HOH HOH . K 9 HOH A 38 838 39 HOH HOH . K 9 HOH A 39 839 40 HOH HOH . K 9 HOH A 40 840 41 HOH HOH . K 9 HOH A 41 841 42 HOH HOH . K 9 HOH A 42 842 43 HOH HOH . K 9 HOH A 43 843 44 HOH HOH . K 9 HOH A 44 844 45 HOH HOH . K 9 HOH A 45 845 46 HOH HOH . K 9 HOH A 46 846 47 HOH HOH . K 9 HOH A 47 847 48 HOH HOH . K 9 HOH A 48 848 49 HOH HOH . K 9 HOH A 49 849 50 HOH HOH . K 9 HOH A 50 850 51 HOH HOH . K 9 HOH A 51 851 52 HOH HOH . K 9 HOH A 52 852 53 HOH HOH . K 9 HOH A 53 853 54 HOH HOH . K 9 HOH A 54 854 55 HOH HOH . K 9 HOH A 55 855 56 HOH HOH . K 9 HOH A 56 856 57 HOH HOH . K 9 HOH A 57 857 58 HOH HOH . K 9 HOH A 58 858 59 HOH HOH . K 9 HOH A 59 859 60 HOH HOH . K 9 HOH A 60 860 61 HOH HOH . K 9 HOH A 61 861 62 HOH HOH . K 9 HOH A 62 862 63 HOH HOH . K 9 HOH A 63 863 64 HOH HOH . K 9 HOH A 64 864 65 HOH HOH . K 9 HOH A 65 865 66 HOH HOH . K 9 HOH A 66 866 67 HOH HOH . K 9 HOH A 67 867 68 HOH HOH . K 9 HOH A 68 868 69 HOH HOH . K 9 HOH A 69 869 71 HOH HOH . K 9 HOH A 70 870 72 HOH HOH . K 9 HOH A 71 871 73 HOH HOH . K 9 HOH A 72 872 74 HOH HOH . K 9 HOH A 73 873 75 HOH HOH . K 9 HOH A 74 874 76 HOH HOH . K 9 HOH A 75 875 77 HOH HOH . K 9 HOH A 76 876 78 HOH HOH . K 9 HOH A 77 877 79 HOH HOH . K 9 HOH A 78 878 80 HOH HOH . K 9 HOH A 79 879 81 HOH HOH . K 9 HOH A 80 880 82 HOH HOH . K 9 HOH A 81 881 83 HOH HOH . K 9 HOH A 82 882 84 HOH HOH . K 9 HOH A 83 883 85 HOH HOH . K 9 HOH A 84 884 86 HOH HOH . K 9 HOH A 85 885 87 HOH HOH . K 9 HOH A 86 886 88 HOH HOH . K 9 HOH A 87 887 89 HOH HOH . K 9 HOH A 88 888 90 HOH HOH . K 9 HOH A 89 889 91 HOH HOH . K 9 HOH A 90 890 93 HOH HOH . K 9 HOH A 91 891 94 HOH HOH . K 9 HOH A 92 892 95 HOH HOH . K 9 HOH A 93 893 96 HOH HOH . K 9 HOH A 94 894 97 HOH HOH . K 9 HOH A 95 895 98 HOH HOH . K 9 HOH A 96 896 99 HOH HOH . K 9 HOH A 97 897 100 HOH HOH . K 9 HOH A 98 898 101 HOH HOH . K 9 HOH A 99 899 102 HOH HOH . K 9 HOH A 100 900 103 HOH HOH . K 9 HOH A 101 901 104 HOH HOH . K 9 HOH A 102 902 105 HOH HOH . K 9 HOH A 103 903 106 HOH HOH . K 9 HOH A 104 904 107 HOH HOH . K 9 HOH A 105 905 108 HOH HOH . K 9 HOH A 106 906 109 HOH HOH . K 9 HOH A 107 907 110 HOH HOH . K 9 HOH A 108 908 111 HOH HOH . K 9 HOH A 109 909 112 HOH HOH . K 9 HOH A 110 910 113 HOH HOH . K 9 HOH A 111 911 114 HOH HOH . K 9 HOH A 112 912 115 HOH HOH . K 9 HOH A 113 913 117 HOH HOH . K 9 HOH A 114 914 118 HOH HOH . K 9 HOH A 115 915 120 HOH HOH . K 9 HOH A 116 916 121 HOH HOH . K 9 HOH A 117 917 122 HOH HOH . K 9 HOH A 118 918 123 HOH HOH . K 9 HOH A 119 919 125 HOH HOH . K 9 HOH A 120 920 127 HOH HOH . K 9 HOH A 121 921 128 HOH HOH . K 9 HOH A 122 922 129 HOH HOH . K 9 HOH A 123 923 130 HOH HOH . K 9 HOH A 124 924 132 HOH HOH . K 9 HOH A 125 925 133 HOH HOH . K 9 HOH A 126 926 134 HOH HOH . K 9 HOH A 127 927 135 HOH HOH . K 9 HOH A 128 928 136 HOH HOH . K 9 HOH A 129 929 137 HOH HOH . K 9 HOH A 130 930 138 HOH HOH . K 9 HOH A 131 931 139 HOH HOH . K 9 HOH A 132 932 140 HOH HOH . K 9 HOH A 133 933 143 HOH HOH . K 9 HOH A 134 934 144 HOH HOH . K 9 HOH A 135 935 145 HOH HOH . K 9 HOH A 136 936 146 HOH HOH . K 9 HOH A 137 937 147 HOH HOH . K 9 HOH A 138 938 156 HOH HOH . K 9 HOH A 139 939 157 HOH HOH . K 9 HOH A 140 940 158 HOH HOH . K 9 HOH A 141 941 161 HOH HOH . K 9 HOH A 142 942 163 HOH HOH . K 9 HOH A 143 943 164 HOH HOH . K 9 HOH A 144 944 165 HOH HOH . K 9 HOH A 145 945 167 HOH HOH . K 9 HOH A 146 946 169 HOH HOH . K 9 HOH A 147 947 170 HOH HOH . K 9 HOH A 148 948 171 HOH HOH . K 9 HOH A 149 949 172 HOH HOH . K 9 HOH A 150 950 173 HOH HOH . K 9 HOH A 151 951 174 HOH HOH . K 9 HOH A 152 952 175 HOH HOH . K 9 HOH A 153 953 177 HOH HOH . K 9 HOH A 154 954 178 HOH HOH . K 9 HOH A 155 955 179 HOH HOH . K 9 HOH A 156 956 180 HOH HOH . K 9 HOH A 157 957 182 HOH HOH . K 9 HOH A 158 958 183 HOH HOH . K 9 HOH A 159 959 184 HOH HOH . K 9 HOH A 160 960 185 HOH HOH . K 9 HOH A 161 961 186 HOH HOH . K 9 HOH A 162 962 187 HOH HOH . K 9 HOH A 163 963 191 HOH HOH . K 9 HOH A 164 964 195 HOH HOH . K 9 HOH A 165 965 196 HOH HOH . K 9 HOH A 166 966 197 HOH HOH . K 9 HOH A 167 967 198 HOH HOH . K 9 HOH A 168 968 199 HOH HOH . K 9 HOH A 169 969 200 HOH HOH . K 9 HOH A 170 970 201 HOH HOH . K 9 HOH A 171 971 207 HOH HOH . K 9 HOH A 172 972 211 HOH HOH . K 9 HOH A 173 973 213 HOH HOH . K 9 HOH A 174 974 214 HOH HOH . K 9 HOH A 175 975 217 HOH HOH . K 9 HOH A 176 976 219 HOH HOH . K 9 HOH A 177 977 220 HOH HOH . K 9 HOH A 178 978 224 HOH HOH . K 9 HOH A 179 979 237 HOH HOH . K 9 HOH A 180 980 238 HOH HOH . K 9 HOH A 181 981 240 HOH HOH . K 9 HOH A 182 982 243 HOH HOH . K 9 HOH A 183 983 255 HOH HOH . K 9 HOH A 184 984 265 HOH HOH . K 9 HOH A 185 985 267 HOH HOH . K 9 HOH A 186 986 279 HOH HOH . K 9 HOH A 187 987 283 HOH HOH . K 9 HOH A 188 988 294 HOH HOH . K 9 HOH A 189 989 298 HOH HOH . K 9 HOH A 190 990 300 HOH HOH . K 9 HOH A 191 991 304 HOH HOH . K 9 HOH A 192 992 313 HOH HOH . K 9 HOH A 193 993 316 HOH HOH . K 9 HOH A 194 994 317 HOH HOH . K 9 HOH A 195 995 343 HOH HOH . K 9 HOH A 196 996 359 HOH HOH . K 9 HOH A 197 997 361 HOH HOH . K 9 HOH A 198 998 371 HOH HOH . K 9 HOH A 199 999 375 HOH HOH . K 9 HOH A 200 1000 382 HOH HOH . K 9 HOH A 201 1001 388 HOH HOH . K 9 HOH A 202 1002 392 HOH HOH . K 9 HOH A 203 1003 396 HOH HOH . K 9 HOH A 204 1004 397 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id J _atom_site.label_entity_id 3 _atom_site.Cartn_x 3.116 _atom_site.Cartn_y 10.505 _atom_site.Cartn_z 7.307 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 56.13 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 710 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 337 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #