data_4NEG # _model_server_result.job_id ZtE3DU6V-GVR5OlUEPTpgg _model_server_result.datetime_utc '2024-11-26 01:54:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4neg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":405}' # _entry.id 4NEG # _exptl.entry_id 4NEG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.35 _cell.angle_gamma 90 _cell.entry_id 4NEG _cell.length_a 200.762 _cell.length_b 49.037 _cell.length_c 76.494 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4NEG _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LEU 27 A LEU 24 1_555 A N MSE 28 A MSE 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C MSE 28 A MSE 25 1_555 A N GLN 29 A GLN 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 A C ALA 41 A ALA 38 1_555 A N MSE 42 A MSE 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale4 A C MSE 42 A MSE 39 1_555 A N GLU 43 A GLU 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale5 A C ASN 70 A ASN 67 1_555 A N MSE 71 A MSE 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale6 A C MSE 71 A MSE 68 1_555 A N THR 72 A THR 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale7 A C ARG 107 A ARG 104 1_555 A N MSE 108 A MSE 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale8 A C MSE 108 A MSE 105 1_555 A N GLY 109 A GLY 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale9 A C PHE 140 A PHE 137 1_555 A N MSE 141 A MSE 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale10 A C MSE 141 A MSE 138 1_555 A N GLY 142 A GLY 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale11 A C ARG 155 A ARG 152 1_555 A N MSE 156 A MSE 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale12 A C MSE 156 A MSE 153 1_555 A N GLU 157 A GLU 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale13 A C ILE 194 A ILE 191 1_555 A N MSE 195 A MSE 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale14 A C MSE 195 A MSE 192 1_555 A N GLY 196 A GLY 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale15 A C ALA 244 A ALA 241 1_555 A N MSE 245 A MSE 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale16 A C MSE 245 A MSE 242 1_555 A N GLY 246 A GLY 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale17 A C GLY 246 A GLY 243 1_555 A N MSE 247 A MSE 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale18 A C MSE 247 A MSE 244 1_555 A N PHE 248 A PHE 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale19 A C GLN 371 A GLN 368 1_555 A N MSE 372 A MSE 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale20 A C MSE 372 A MSE 369 1_555 A N LYS 373 A LYS 370 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale21 A C TYR 396 A TYR 393 1_555 A N MSE 397 A MSE 394 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale22 B C LEU 27 B LEU 24 1_555 B N MSE 28 B MSE 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale23 B C MSE 28 B MSE 25 1_555 B N GLN 29 B GLN 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale24 B C ALA 41 B ALA 38 1_555 B N MSE 42 B MSE 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale25 B C MSE 42 B MSE 39 1_555 B N GLU 43 B GLU 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale26 B C ASN 70 B ASN 67 1_555 B N MSE 71 B MSE 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale27 B C MSE 71 B MSE 68 1_555 B N THR 72 B THR 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale28 B C ARG 107 B ARG 104 1_555 B N MSE 108 B MSE 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale29 B C MSE 108 B MSE 105 1_555 B N GLY 109 B GLY 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale30 B C PHE 140 B PHE 137 1_555 B N MSE 141 B MSE 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale31 B C MSE 141 B MSE 138 1_555 B N GLY 142 B GLY 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale32 B C ARG 155 B ARG 152 1_555 B N MSE 156 B MSE 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale33 B C MSE 156 B MSE 153 1_555 B N GLU 157 B GLU 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale34 B C ILE 194 B ILE 191 1_555 B N MSE 195 B MSE 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale35 B C MSE 195 B MSE 192 1_555 B N GLY 196 B GLY 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale36 B C ALA 244 B ALA 241 1_555 B N MSE 245 B MSE 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale37 B C MSE 245 B MSE 242 1_555 B N GLY 246 B GLY 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale38 B C GLY 246 B GLY 243 1_555 B N MSE 247 B MSE 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale39 B C MSE 247 B MSE 244 1_555 B N PHE 248 B PHE 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale40 B C GLN 371 B GLN 368 1_555 B N MSE 372 B MSE 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale41 B C MSE 372 B MSE 369 1_555 B N LYS 373 B LYS 370 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 133 n n C1 C2 GOL sing 134 n n C1 H11 GOL sing 135 n n C1 H12 GOL sing 136 n n O1 HO1 GOL sing 137 n n C2 O2 GOL sing 138 n n C2 C3 GOL sing 139 n n C2 H2 GOL sing 140 n n O2 HO2 GOL sing 141 n n C3 O3 GOL sing 142 n n C3 H31 GOL sing 143 n n C3 H32 GOL sing 144 n n O3 HO3 GOL sing 145 n n # _atom_sites.entry_id 4NEG _atom_sites.fract_transf_matrix[1][1] 0.004981 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00082 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020393 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013249 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 401 1 SO4 SO4 . D 2 SO4 A 1 402 3 SO4 SO4 . E 3 FMT A 1 403 1 FMT FMT . F 3 FMT A 1 404 2 FMT FMT . G 4 GOL A 1 405 1 GOL GOL . H 2 SO4 B 1 401 2 SO4 SO4 . I 5 HOH A 1 501 1 HOH HOH . I 5 HOH A 2 502 2 HOH HOH . I 5 HOH A 3 503 4 HOH HOH . I 5 HOH A 4 504 5 HOH HOH . I 5 HOH A 5 505 6 HOH HOH . I 5 HOH A 6 506 8 HOH HOH . I 5 HOH A 7 507 9 HOH HOH . I 5 HOH A 8 508 10 HOH HOH . I 5 HOH A 9 509 11 HOH HOH . I 5 HOH A 10 510 12 HOH HOH . I 5 HOH A 11 511 14 HOH HOH . I 5 HOH A 12 512 15 HOH HOH . I 5 HOH A 13 513 16 HOH HOH . I 5 HOH A 14 514 17 HOH HOH . I 5 HOH A 15 515 19 HOH HOH . I 5 HOH A 16 516 21 HOH HOH . I 5 HOH A 17 517 22 HOH HOH . I 5 HOH A 18 518 24 HOH HOH . I 5 HOH A 19 519 26 HOH HOH . I 5 HOH A 20 520 27 HOH HOH . I 5 HOH A 21 521 30 HOH HOH . I 5 HOH A 22 522 32 HOH HOH . I 5 HOH A 23 523 35 HOH HOH . I 5 HOH A 24 524 36 HOH HOH . I 5 HOH A 25 525 38 HOH HOH . I 5 HOH A 26 526 39 HOH HOH . I 5 HOH A 27 527 40 HOH HOH . I 5 HOH A 28 528 42 HOH HOH . I 5 HOH A 29 529 44 HOH HOH . I 5 HOH A 30 530 46 HOH HOH . I 5 HOH A 31 531 49 HOH HOH . I 5 HOH A 32 532 55 HOH HOH . I 5 HOH A 33 533 56 HOH HOH . I 5 HOH A 34 534 57 HOH HOH . I 5 HOH A 35 535 59 HOH HOH . I 5 HOH A 36 536 60 HOH HOH . I 5 HOH A 37 537 61 HOH HOH . I 5 HOH A 38 538 63 HOH HOH . I 5 HOH A 39 539 64 HOH HOH . I 5 HOH A 40 540 65 HOH HOH . I 5 HOH A 41 541 68 HOH HOH . I 5 HOH A 42 542 69 HOH HOH . I 5 HOH A 43 543 71 HOH HOH . I 5 HOH A 44 544 73 HOH HOH . I 5 HOH A 45 545 74 HOH HOH . I 5 HOH A 46 546 75 HOH HOH . J 5 HOH B 1 501 3 HOH HOH . J 5 HOH B 2 502 7 HOH HOH . J 5 HOH B 3 503 13 HOH HOH . J 5 HOH B 4 504 18 HOH HOH . J 5 HOH B 5 505 20 HOH HOH . J 5 HOH B 6 506 23 HOH HOH . J 5 HOH B 7 507 25 HOH HOH . J 5 HOH B 8 508 28 HOH HOH . J 5 HOH B 9 509 29 HOH HOH . J 5 HOH B 10 510 31 HOH HOH . J 5 HOH B 11 511 33 HOH HOH . J 5 HOH B 12 512 34 HOH HOH . J 5 HOH B 13 513 37 HOH HOH . J 5 HOH B 14 514 41 HOH HOH . J 5 HOH B 15 515 43 HOH HOH . J 5 HOH B 16 516 45 HOH HOH . J 5 HOH B 17 517 47 HOH HOH . J 5 HOH B 18 518 48 HOH HOH . J 5 HOH B 19 519 50 HOH HOH . J 5 HOH B 20 520 51 HOH HOH . J 5 HOH B 21 521 52 HOH HOH . J 5 HOH B 22 522 53 HOH HOH . J 5 HOH B 23 523 54 HOH HOH . J 5 HOH B 24 524 58 HOH HOH . J 5 HOH B 25 525 62 HOH HOH . J 5 HOH B 26 526 66 HOH HOH . J 5 HOH B 27 527 67 HOH HOH . J 5 HOH B 28 528 70 HOH HOH . J 5 HOH B 29 529 72 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 4 -35.726 -0.241 -7.294 1 71.28 ? C1 GOL 405 A 1 HETATM 2 O O1 GOL . . . G 4 -35.324 -1.591 -7.253 1 70.6 ? O1 GOL 405 A 1 HETATM 3 C C2 GOL . . . G 4 -37.155 -0.163 -6.785 1 73.85 ? C2 GOL 405 A 1 HETATM 4 O O2 GOL . . . G 4 -37.878 -1.264 -7.305 1 75.37 ? O2 GOL 405 A 1 HETATM 5 C C3 GOL . . . G 4 -37.777 1.167 -7.211 1 74.07 ? C3 GOL 405 A 1 HETATM 6 O O3 GOL . . . G 4 -38.73 1.577 -6.251 1 68.19 ? O3 GOL 405 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 619 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #