data_4NEW # _model_server_result.job_id J-YcHqZGWCaNrZ_2poaFxQ _model_server_result.datetime_utc '2024-11-26 14:41:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4new # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 4NEW # _exptl.entry_id 4NEW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4NEW _cell.length_a 86.846 _cell.length_b 86.846 _cell.length_c 151.099 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4NEW _symmetry.cell_setting ? _symmetry.Int_Tables_number 95 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_543 x,-y-1,-z-3/2 1 0 0 0 -1 0 0 0 -1 0 -86.846 -226.6485 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 53 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 53 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 58 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 58 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.46 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 137 n n PA O2A FAD sing 138 n n PA O5B FAD sing 139 n n PA O3P FAD sing 140 n n O2A HOA2 FAD sing 141 n n O5B C5B FAD sing 142 n n C5B C4B FAD sing 143 n n C5B H51A FAD sing 144 n n C5B H52A FAD sing 145 n n C4B O4B FAD sing 146 n n C4B C3B FAD sing 147 n n C4B H4B FAD sing 148 n n O4B C1B FAD sing 149 n n C3B O3B FAD sing 150 n n C3B C2B FAD sing 151 n n C3B H3B FAD sing 152 n n O3B HO3A FAD sing 153 n n C2B O2B FAD sing 154 n n C2B C1B FAD sing 155 n n C2B H2B FAD sing 156 n n O2B HO2A FAD sing 157 n n C1B N9A FAD sing 158 n n C1B H1B FAD sing 159 n n N9A C8A FAD sing 160 n y N9A C4A FAD sing 161 n y C8A N7A FAD doub 162 n y C8A H8A FAD sing 163 n n N7A C5A FAD sing 164 n y C5A C6A FAD sing 165 n y C5A C4A FAD doub 166 n y C6A N6A FAD sing 167 n n C6A N1A FAD doub 168 n y N6A H61A FAD sing 169 n n N6A H62A FAD sing 170 n n N1A C2A FAD sing 171 n y C2A N3A FAD doub 172 n y C2A H2A FAD sing 173 n n N3A C4A FAD sing 174 n y N1 C2 FAD sing 175 n n N1 C10 FAD doub 176 n n C2 O2 FAD doub 177 n n C2 N3 FAD sing 178 n n N3 C4 FAD sing 179 n n N3 HN3 FAD sing 180 n n C4 O4 FAD doub 181 n n C4 C4X FAD sing 182 n n C4X N5 FAD doub 183 n n C4X C10 FAD sing 184 n n N5 C5X FAD sing 185 n n C5X C6 FAD doub 186 n y C5X C9A FAD sing 187 n y C6 C7 FAD sing 188 n y C6 H6 FAD sing 189 n n C7 C7M FAD sing 190 n n C7 C8 FAD doub 191 n y C7M HM71 FAD sing 192 n n C7M HM72 FAD sing 193 n n C7M HM73 FAD sing 194 n n C8 C8M FAD sing 195 n n C8 C9 FAD sing 196 n y C8M HM81 FAD sing 197 n n C8M HM82 FAD sing 198 n n C8M HM83 FAD sing 199 n n C9 C9A FAD doub 200 n y C9 H9 FAD sing 201 n n C9A N10 FAD sing 202 n n N10 C10 FAD sing 203 n n N10 C1' FAD sing 204 n n C1' C2' FAD sing 205 n n C1' "H1'1" FAD sing 206 n n C1' "H1'2" FAD sing 207 n n C2' O2' FAD sing 208 n n C2' C3' FAD sing 209 n n C2' H2' FAD sing 210 n n O2' HO2' FAD sing 211 n n C3' O3' FAD sing 212 n n C3' C4' FAD sing 213 n n C3' H3' FAD sing 214 n n O3' HO3' FAD sing 215 n n C4' O4' FAD sing 216 n n C4' C5' FAD sing 217 n n C4' H4' FAD sing 218 n n O4' HO4' FAD sing 219 n n C5' O5' FAD sing 220 n n C5' "H5'1" FAD sing 221 n n C5' "H5'2" FAD sing 222 n n O5' P FAD sing 223 n n P O1P FAD doub 224 n n P O2P FAD sing 225 n n P O3P FAD sing 226 n n O2P HOP2 FAD sing 227 n n # _atom_sites.entry_id 4NEW _atom_sites.fract_transf_matrix[1][1] 0.011515 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011515 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006618 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FAD A 1 501 501 FAD FAD . C 3 2JR A 1 502 999 2JR 2JR . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . B 2 92.485 -21.598 -129.956 1 71.81 ? PA FAD 501 A 1 HETATM 2 O O1A FAD . . . B 2 91.408 -21.763 -131.001 1 74.25 ? O1A FAD 501 A 1 HETATM 3 O O2A FAD . . . B 2 92.165 -21.837 -128.499 1 73.01 ? O2A FAD 501 A 1 HETATM 4 O O5B FAD . . . B 2 93.105 -20.119 -130.1 1 79.67 ? O5B FAD 501 A 1 HETATM 5 C C5B FAD . . . B 2 92.675 -19.253 -131.148 1 77.18 ? C5B FAD 501 A 1 HETATM 6 C C4B FAD . . . B 2 91.55 -18.36 -130.639 1 78.24 ? C4B FAD 501 A 1 HETATM 7 O O4B FAD . . . B 2 91.804 -17.004 -131.014 1 76.91 ? O4B FAD 501 A 1 HETATM 8 C C3B FAD . . . B 2 90.212 -18.766 -131.235 1 88.47 ? C3B FAD 501 A 1 HETATM 9 O O3B FAD . . . B 2 89.3 -19.125 -130.193 1 85.74 ? O3B FAD 501 A 1 HETATM 10 C C2B FAD . . . B 2 89.694 -17.554 -131.983 1 80.1 ? C2B FAD 501 A 1 HETATM 11 O O2B FAD . . . B 2 88.447 -17.129 -131.425 1 89.37 ? O2B FAD 501 A 1 HETATM 12 C C1B FAD . . . B 2 90.741 -16.465 -131.807 1 83.94 ? C1B FAD 501 A 1 HETATM 13 N N9A FAD . . . B 2 91.265 -16.055 -133.134 1 89.77 ? N9A FAD 501 A 1 HETATM 14 C C8A FAD . . . B 2 91.379 -16.85 -134.215 1 82.11 ? C8A FAD 501 A 1 HETATM 15 N N7A FAD . . . B 2 91.893 -16.169 -135.271 1 83.29 ? N7A FAD 501 A 1 HETATM 16 C C5A FAD . . . B 2 92.118 -14.905 -134.866 1 84.41 ? C5A FAD 501 A 1 HETATM 17 C C6A FAD . . . B 2 92.65 -13.666 -135.481 1 87.65 ? C6A FAD 501 A 1 HETATM 18 N N6A FAD . . . B 2 93.056 -13.643 -136.773 1 82.46 ? N6A FAD 501 A 1 HETATM 19 N N1A FAD . . . B 2 92.717 -12.56 -134.707 1 90.33 ? N1A FAD 501 A 1 HETATM 20 C C2A FAD . . . B 2 92.317 -12.569 -133.422 1 87.6 ? C2A FAD 501 A 1 HETATM 21 N N3A FAD . . . B 2 91.825 -13.657 -132.801 1 87.13 ? N3A FAD 501 A 1 HETATM 22 C C4A FAD . . . B 2 91.702 -14.835 -133.457 1 86.33 ? C4A FAD 501 A 1 HETATM 23 N N1 FAD . . . B 2 91.425 -31.015 -127.115 1 74.67 ? N1 FAD 501 A 1 HETATM 24 C C2 FAD . . . B 2 91.645 -31.734 -125.985 1 70.48 ? C2 FAD 501 A 1 HETATM 25 O O2 FAD . . . B 2 92.801 -31.767 -125.511 1 71.69 ? O2 FAD 501 A 1 HETATM 26 N N3 FAD . . . B 2 90.671 -32.414 -125.354 1 65.52 ? N3 FAD 501 A 1 HETATM 27 C C4 FAD . . . B 2 89.408 -32.429 -125.797 1 68.1 ? C4 FAD 501 A 1 HETATM 28 O O4 FAD . . . B 2 88.524 -33.07 -125.188 1 68.64 ? O4 FAD 501 A 1 HETATM 29 C C4X FAD . . . B 2 89.081 -31.668 -127.027 1 65.48 ? C4X FAD 501 A 1 HETATM 30 N N5 FAD . . . B 2 87.832 -31.632 -127.54 1 67.95 ? N5 FAD 501 A 1 HETATM 31 C C5X FAD . . . B 2 87.565 -30.928 -128.664 1 69.64 ? C5X FAD 501 A 1 HETATM 32 C C6 FAD . . . B 2 86.272 -30.906 -129.174 1 68.3 ? C6 FAD 501 A 1 HETATM 33 C C7 FAD . . . B 2 85.99 -30.185 -130.328 1 72.09 ? C7 FAD 501 A 1 HETATM 34 C C7M FAD . . . B 2 84.587 -30.163 -130.877 1 64.32 ? C7M FAD 501 A 1 HETATM 35 C C8 FAD . . . B 2 87.07 -29.435 -131.022 1 72.96 ? C8 FAD 501 A 1 HETATM 36 C C8M FAD . . . B 2 86.762 -28.655 -132.273 1 71.28 ? C8M FAD 501 A 1 HETATM 37 C C9 FAD . . . B 2 88.365 -29.455 -130.517 1 65.12 ? C9 FAD 501 A 1 HETATM 38 C C9A FAD . . . B 2 88.648 -30.175 -129.362 1 66.88 ? C9A FAD 501 A 1 HETATM 39 N N10 FAD . . . B 2 89.957 -30.2 -128.843 1 69.93 ? N10 FAD 501 A 1 HETATM 40 C C10 FAD . . . B 2 90.198 -30.942 -127.673 1 66.82 ? C10 FAD 501 A 1 HETATM 41 C C1' FAD . . . B 2 91.041 -29.471 -129.506 1 68 ? C1' FAD 501 A 1 HETATM 42 C C2' FAD . . . B 2 91.397 -28.236 -128.687 1 69.97 ? C2' FAD 501 A 1 HETATM 43 O O2' FAD . . . B 2 90.259 -27.371 -128.608 1 68.81 ? O2' FAD 501 A 1 HETATM 44 C C3' FAD . . . B 2 92.565 -27.484 -129.313 1 71.12 ? C3' FAD 501 A 1 HETATM 45 O O3' FAD . . . B 2 93.726 -28.321 -129.316 1 79.14 ? O3' FAD 501 A 1 HETATM 46 C C4' FAD . . . B 2 92.865 -26.203 -128.543 1 70.04 ? C4' FAD 501 A 1 HETATM 47 O O4' FAD . . . B 2 91.689 -25.386 -128.5 1 70.02 ? O4' FAD 501 A 1 HETATM 48 C C5' FAD . . . B 2 94 -25.425 -129.198 1 71.83 ? C5' FAD 501 A 1 HETATM 49 O O5' FAD . . . B 2 94.183 -24.187 -128.515 1 67.35 ? O5' FAD 501 A 1 HETATM 50 P P FAD . . . B 2 94.846 -22.928 -129.269 1 65.77 ? P FAD 501 A 1 HETATM 51 O O1P FAD . . . B 2 96.074 -23.411 -130.003 1 73.49 ? O1P FAD 501 A 1 HETATM 52 O O2P FAD . . . B 2 94.958 -21.791 -128.281 1 86.5 ? O2P FAD 501 A 1 HETATM 53 O O3P FAD . . . B 2 93.727 -22.541 -130.359 1 66.81 ? O3P FAD 501 A 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 53 #