data_4NFE # _model_server_result.job_id JfuND-Tnt8paXz3FFnP7Zw _model_server_result.datetime_utc '2024-11-30 04:56:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4nfe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 4NFE # _exptl.entry_id 4NFE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 120.152 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description BENZAMIDINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4NFE _cell.length_a 59.65 _cell.length_b 60.39 _cell.length_c 67.68 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4NFE _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 22 1_555 A SG CYS 149 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? disulf ? disulf2 A SG CYS 26 A CYS 42 1_555 A SG CYS 42 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf3 A SG CYS 128 A CYS 136 1_555 A SG CYS 195 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf4 A SG CYS 160 A CYS 168 1_555 A SG CYS 174 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf5 A SG CYS 185 A CYS 191 1_555 A SG CYS 210 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? # _chem_comp.formula 'C7 H8 N2' _chem_comp.formula_weight 120.152 _chem_comp.id BEN _chem_comp.mon_nstd_flag . _chem_comp.name BENZAMIDINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 BEN doub 70 n y C1 C6 BEN sing 71 n y C1 C BEN sing 72 n n C2 C3 BEN sing 73 n y C2 H2 BEN sing 74 n n C3 C4 BEN doub 75 n y C3 H3 BEN sing 76 n n C4 C5 BEN sing 77 n y C4 H4 BEN sing 78 n n C5 C6 BEN doub 79 n y C5 H5 BEN sing 80 n n C6 H6 BEN sing 81 n n C N1 BEN doub 82 e n C N2 BEN sing 83 n n N1 HN1 BEN sing 84 n n N2 HN21 BEN sing 85 n n N2 HN22 BEN sing 86 n n # _atom_sites.entry_id 4NFE _atom_sites.fract_transf_matrix[1][1] 0.016764 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016559 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014775 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BEN A 1 301 1 BEN BEN . C 2 BEN A 1 302 2 BEN BEN . D 3 SO4 A 1 303 1 SO4 SO4 . E 3 SO4 A 1 304 2 SO4 SO4 . F 3 SO4 A 1 305 3 SO4 SO4 . G 4 HOH A 1 401 1 HOH HOH . G 4 HOH A 2 402 2 HOH HOH . G 4 HOH A 3 403 3 HOH HOH . G 4 HOH A 4 404 4 HOH HOH . G 4 HOH A 5 405 5 HOH HOH . G 4 HOH A 6 406 6 HOH HOH . G 4 HOH A 7 407 7 HOH HOH . G 4 HOH A 8 408 8 HOH HOH . G 4 HOH A 9 409 9 HOH HOH . G 4 HOH A 10 410 10 HOH HOH . G 4 HOH A 11 411 11 HOH HOH . G 4 HOH A 12 412 12 HOH HOH . G 4 HOH A 13 413 13 HOH HOH . G 4 HOH A 14 414 14 HOH HOH . G 4 HOH A 15 415 15 HOH HOH . G 4 HOH A 16 416 16 HOH HOH . G 4 HOH A 17 417 17 HOH HOH . G 4 HOH A 18 418 18 HOH HOH . G 4 HOH A 19 419 19 HOH HOH . G 4 HOH A 20 420 20 HOH HOH . G 4 HOH A 21 421 21 HOH HOH . G 4 HOH A 22 422 22 HOH HOH . G 4 HOH A 23 423 23 HOH HOH . G 4 HOH A 24 424 24 HOH HOH . G 4 HOH A 25 425 25 HOH HOH . G 4 HOH A 26 426 26 HOH HOH . G 4 HOH A 27 427 27 HOH HOH . G 4 HOH A 28 428 28 HOH HOH . G 4 HOH A 29 429 29 HOH HOH . G 4 HOH A 30 430 30 HOH HOH . G 4 HOH A 31 431 31 HOH HOH . G 4 HOH A 32 432 32 HOH HOH . G 4 HOH A 33 433 33 HOH HOH . G 4 HOH A 34 434 34 HOH HOH . G 4 HOH A 35 435 35 HOH HOH . G 4 HOH A 36 436 36 HOH HOH . G 4 HOH A 37 437 37 HOH HOH . G 4 HOH A 38 438 38 HOH HOH . G 4 HOH A 39 439 39 HOH HOH . G 4 HOH A 40 440 40 HOH HOH . G 4 HOH A 41 441 41 HOH HOH . G 4 HOH A 42 442 42 HOH HOH . G 4 HOH A 43 443 43 HOH HOH . G 4 HOH A 44 444 44 HOH HOH . G 4 HOH A 45 445 45 HOH HOH . G 4 HOH A 46 446 46 HOH HOH . G 4 HOH A 47 447 47 HOH HOH . G 4 HOH A 48 448 48 HOH HOH . G 4 HOH A 49 449 49 HOH HOH . G 4 HOH A 50 450 51 HOH HOH . G 4 HOH A 51 451 52 HOH HOH . G 4 HOH A 52 452 53 HOH HOH . G 4 HOH A 53 453 54 HOH HOH . G 4 HOH A 54 454 55 HOH HOH . G 4 HOH A 55 455 56 HOH HOH . G 4 HOH A 56 456 57 HOH HOH . G 4 HOH A 57 457 58 HOH HOH . G 4 HOH A 58 458 60 HOH HOH . G 4 HOH A 59 459 61 HOH HOH . G 4 HOH A 60 460 62 HOH HOH . G 4 HOH A 61 461 63 HOH HOH . G 4 HOH A 62 462 64 HOH HOH . G 4 HOH A 63 463 65 HOH HOH . G 4 HOH A 64 464 66 HOH HOH . G 4 HOH A 65 465 67 HOH HOH . G 4 HOH A 66 466 68 HOH HOH . G 4 HOH A 67 467 69 HOH HOH . G 4 HOH A 68 468 70 HOH HOH . G 4 HOH A 69 469 71 HOH HOH . G 4 HOH A 70 470 72 HOH HOH . G 4 HOH A 71 471 73 HOH HOH . G 4 HOH A 72 472 74 HOH HOH . G 4 HOH A 73 473 75 HOH HOH . G 4 HOH A 74 474 76 HOH HOH . G 4 HOH A 75 475 77 HOH HOH . G 4 HOH A 76 476 78 HOH HOH . G 4 HOH A 77 477 79 HOH HOH . G 4 HOH A 78 478 80 HOH HOH . G 4 HOH A 79 479 81 HOH HOH . G 4 HOH A 80 480 82 HOH HOH . G 4 HOH A 81 481 83 HOH HOH . G 4 HOH A 82 482 84 HOH HOH . G 4 HOH A 83 483 85 HOH HOH . G 4 HOH A 84 484 86 HOH HOH . G 4 HOH A 85 485 87 HOH HOH . G 4 HOH A 86 486 88 HOH HOH . G 4 HOH A 87 487 89 HOH HOH . G 4 HOH A 88 488 90 HOH HOH . G 4 HOH A 89 489 91 HOH HOH . G 4 HOH A 90 490 92 HOH HOH . G 4 HOH A 91 491 93 HOH HOH . G 4 HOH A 92 492 94 HOH HOH . G 4 HOH A 93 493 95 HOH HOH . G 4 HOH A 94 494 96 HOH HOH . G 4 HOH A 95 495 97 HOH HOH . G 4 HOH A 96 496 98 HOH HOH . G 4 HOH A 97 497 99 HOH HOH . G 4 HOH A 98 498 100 HOH HOH . G 4 HOH A 99 499 101 HOH HOH . G 4 HOH A 100 500 102 HOH HOH . G 4 HOH A 101 501 103 HOH HOH . G 4 HOH A 102 502 104 HOH HOH . G 4 HOH A 103 503 105 HOH HOH . G 4 HOH A 104 504 106 HOH HOH . G 4 HOH A 105 505 107 HOH HOH . G 4 HOH A 106 506 108 HOH HOH . G 4 HOH A 107 507 109 HOH HOH . G 4 HOH A 108 508 110 HOH HOH . G 4 HOH A 109 509 111 HOH HOH . G 4 HOH A 110 510 112 HOH HOH . G 4 HOH A 111 511 113 HOH HOH . G 4 HOH A 112 512 114 HOH HOH . G 4 HOH A 113 513 115 HOH HOH . G 4 HOH A 114 514 116 HOH HOH . G 4 HOH A 115 515 117 HOH HOH . G 4 HOH A 116 516 118 HOH HOH . G 4 HOH A 117 517 119 HOH HOH . G 4 HOH A 118 518 120 HOH HOH . G 4 HOH A 119 519 121 HOH HOH . G 4 HOH A 120 520 122 HOH HOH . G 4 HOH A 121 521 123 HOH HOH . G 4 HOH A 122 522 124 HOH HOH . G 4 HOH A 123 523 125 HOH HOH . G 4 HOH A 124 524 126 HOH HOH . G 4 HOH A 125 525 127 HOH HOH . G 4 HOH A 126 526 128 HOH HOH . G 4 HOH A 127 527 129 HOH HOH . G 4 HOH A 128 528 130 HOH HOH . G 4 HOH A 129 529 131 HOH HOH . G 4 HOH A 130 530 132 HOH HOH . G 4 HOH A 131 531 133 HOH HOH . G 4 HOH A 132 532 134 HOH HOH . G 4 HOH A 133 533 135 HOH HOH . G 4 HOH A 134 534 136 HOH HOH . G 4 HOH A 135 535 137 HOH HOH . G 4 HOH A 136 536 138 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BEN . . . C 2 -20.179 -20.564 2.718 1 14.61 ? C1 BEN 302 A 1 HETATM 2 C C2 BEN . . . C 2 -21.26 -21.201 2.062 1 15.09 ? C2 BEN 302 A 1 HETATM 3 C C3 BEN . . . C 2 -21.47 -20.978 0.697 1 14.76 ? C3 BEN 302 A 1 HETATM 4 C C4 BEN . . . C 2 -20.592 -20.119 -0.002 1 15.21 ? C4 BEN 302 A 1 HETATM 5 C C5 BEN . . . C 2 -19.533 -19.48 0.669 1 15.54 ? C5 BEN 302 A 1 HETATM 6 C C6 BEN . . . C 2 -19.31 -19.717 2.024 1 14.36 ? C6 BEN 302 A 1 HETATM 7 C C BEN . . . C 2 -19.967 -20.833 4.18 1 14.14 ? C BEN 302 A 1 HETATM 8 N N1 BEN . . . C 2 -20.259 -21.951 4.672 1 13.79 ? N1 BEN 302 A 1 HETATM 9 N N2 BEN . . . C 2 -19.472 -19.893 4.953 1 13.43 ? N2 BEN 302 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 9 #